Contig 002876:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027E12+                                                             TCCAGNATC
                      ____________________________________________________________
consensus                                                                TCCAGNATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+                CTCAGCAGACTTTTGAGACGCAGGGTGGGATGAGGCAAGAACCGGGCCAATTTC
rJMSF027E12+          AGTTTCCTCAGCAGACTTTTGAGACGCAGGGTCGGATGAGGCAAGAACCGGGCCAATTTC
                      ____________________________________________________________
consensus             AGTTTCCTCAGCAGACTTTTGAGACGCAGGGTGGGATGAGGCAAGAACCGGGCCAATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          AAGACAAGCAACAAGGAGTTGTTGGAGCATCTCCTTTTCCTGAATACCCTATTAATGTTC
rJMSF027E12+          AAGACAAGCAACAAGGAGTTGTTGGAGCATCTCCTTTTCCTGAATACCCTATTAATGTTC
                      ____________________________________________________________
consensus             AAGACAAGCAACAAGGAGTTGTTGGAGCATCTCCTTTTCCTGAATACCCTATTAATGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          CTCAACCTCATGGTTTTATGCCTGTTAATCCAAATCCAGTTTTGGCCCCCCCTCAATTTG
rJMSF027E12+          CTCAACCTCATGGCTTTATGCCTGTTAATCCAAATCCAGTTTTGGCCCCCCCTCAATTTG
                      ____________________________________________________________
consensus             CTCAACCTCATGGTTTTATGCCTGTTAATCCAAATCCAGTTTTGGCCCCCCCTCAATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          GTTACCCTCATTTTGTACCTGATGGAGCCCAACAATATTATGGCGCCCCGTATGATATGC
rJMSF027E12+          GTTACCCTCATTTTGTACCTGATGGAGCCCAACAATATTATGGCGCCCCGTATGATATGC
                      ____________________________________________________________
consensus             GTTACCCTCATTTTGTACCTGATGGAGCCCAACAATATTATGGCGCCCCGTATGATATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          GAAGGCCAGACTCAGCAGCAGAAGTTGGATCCGAGCAAGGATCATTACTGGGTTTTCCAC
rJMSF027E12+          GAAGGCCAGACTCAGCAGCAGAAGTTGGATCCGAGCAAGGATCATTACTGGGTTTTCCAC
                      ____________________________________________________________
consensus             GAAGGCCAGACTCAGCAGCAGAAGTTGGATCCGAGCAAGGATCATTACTGGGTTTTCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          CTGGTCCTGCAGGGGCTGCAAATTTTGCAGAAGCTTACCCTCGGCCATGGAATATGGGGC
rJMSF027E12+          CTGGTCCTGCAGGGGCTGCAAATTTTGCAGAAGCTTACCCTCGGCCATGGAATATGGGGC
                      ____________________________________________________________
consensus             CTGGTCCTGCAGGGGCTGCAAATTTTGCAGAAGCTTACCCTCGGCCATGGAATATGGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          AGGCTGTTGGGCCTTTTGATTCTACTGCAGTTCATGGATTTATGGATGGTTTCATGAATG
rJMSF027E12+          AGGCTGTTGGGCCTTTTGATTCTACTGCAGTTCATGGATTTATGGATGGTTTCATGAATG
                      ____________________________________________________________
consensus             AGGCTGTTGGGCCTTTTGATTCTACTGCAGTTCATGGATTTATGGATGGTTTCATGAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          CACCTGATCCTCAAGGAAGAAACGCATTCTTTCAAGGAAATTCTGCAGGATTGCCTCCAA
rJMSF027E12+          CACCTGATCCTCAAGGAAGAAACGCATTCTTTCAAGGAAATTCTGCAGGATTGCCTCCAA
                      ____________________________________________________________
consensus             CACCTGATCCTCAAGGAAGAAACGCATTCTTTCAAGGAAATTCTGCAGGATTGCCTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          ATATGCCTCCTGCCTCTTCTTCGTCGGCCAACAAAGGATTAGAAACCGGACAGGGTGGAT
rJMSF027E12+          ATATGCCTCCTGCCTCTTCTTCGTCGGCCAACAAAGGATTAGAAACCGGACAGGGTGGAT
                      ____________________________________________________________
consensus             ATATGCCTCCTGCCTCTTCTTCGTCGGCCAACAAAGGATTAGAAACCGGACAGGGTGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          ATTCGGTGGATGGGAAGACTGTTCTGGCACCACAACCTATGCCTCTCCCTCCTCCTCCTC
rJMSF027E12+          ATTCGGTGGATGGGAAGACTGTTCTGGCACCACAACCTATGCCTCTCCCTCCTCCTCCTC
                      ____________________________________________________________
consensus             ATTCGGTGGATGGGAAGACTGTTCTGGCACCACAACCTATGCCTCTCCCTCCTCCTCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          CTTTGCCTCCCCATATGCACCAGCTCCAAAGAGGCAGATCCTATTCTGGTGATACAGAGT
rJMSF027E12+          CTTTGCCTCCCCATATGCACCAGCTCCAAAGAGGCAGATCCTATTCTGGTGATACAGAGT
                      ____________________________________________________________
consensus             CTTTGCCTCCCCATATGCACCAGCTCCAAAGAGGCAGATCCTATTCTGGTGATACAGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          CATGATACCAGGACTTAACAAGAGAAGCATGATAGCCAAAATTAGCCTTTCTGTTTACTG
rJMSF027E12+          CATGATACCAGGACTTAACAAGAGAAGCATGATAGCCAAAGTTAGCCTTTCTGTTTACTG
                      ____________________________________________________________
consensus             CATGATACCAGGACTTAACAAGAGAAGCATGATAGCCAAAGTTAGCCTTTCTGTTTACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009H23+          TTTAATGTTTGTTTGTAACCTTTTTTTGCTTACCAGTTGTCCTTGTTGAATGTGTTTTGT
rJMSF027E12+          TTTAATGTTTGTTTGTAACCTTTTTTTGCTTA-CAGTTGTCCTTGTTGAATGTGTTTTGT
                      ____________________________________________________________
consensus             TTTAATGTTTGTTTGTAACCTTTTTTTGCTTACCAGTTGTCCTTGTTGAATGTGTTTTGT