Contig 002875:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017G01Sequence578004528 (3)ref|XP_006351308.1|2e-48PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]694002875 (4)ref|XP_006350258.1|1e-36PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]
JMSF002H13Sequence408004528 (3)ref|XP_006351308.1|1e-36PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]736002875 (4)ref|XP_006350258.1|9e-40PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]
JMSF007L10Sequence446003694 (3)ref|XP_009615892.1|2e-43PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 isoform X2 [Nicotiana 777002875 (4)ref|XP_009758658.1|1e-53PREDICTED: F-box/LRR-repeat protein At5g63520-like, partial [Nicotiana sylvestr
JMSF027D02Sequence632004528 (3)ref|XP_006351308.1|3e-60PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]720002875 (4)ref|XP_009758658.1|6e-33PREDICTED: F-box/LRR-repeat protein At5g63520-like, partial [Nicotiana sylvestr

Alignment

This contig is upended


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rJMSF007L10+                                        AAAAAGTAAAATGGAGTACTTTTCAGGAAT
                      ____________________________________________________________
consensus                                           AAAAAGTAAAATGGAGTACTTTTCAGGAAT
 
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rJMSF007L10+          TTCATGAGGTCTTGAGAGGAGACGAGGAGTACTTATATGTCAATGGTCTNGGCATCAAAA
rJMSF002H13+                                     AGTACTTATATGTCAATGGTCT-GGCATCAAAA
                      ____________________________________________________________
consensus             TTCATGAGGTCTTGAGAGGAGACGAGGAGTACTTATATGTCAATGGTCTNGGCATCAAAA
 
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rJMSF007L10+          GTGGAGATTTGTTCCGTTTCTACATTTCAGATTCTAATACTGCACTATCTTCTTGCAAAA
rJMSF002H13+          GTGGAGA-TTGTTCCGTTTCTACATTTCAGATTCTAATACTGCACTATCTTCTTGCAAAA
rJMFF017G01+                                                ACTGCACTATCTTCTTGCAAAA
                      ____________________________________________________________
consensus             GTGGAGATTTGTTCCGTTTCTACATTTCAGATTCTAATACTGCACTATCTTCTTGCAAAA
 
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rJMSF007L10+          AGATTGCCGACAACCTTAGATGTTTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
rJMSF002H13+          AGATTGCCGACAACCTTAGATGTTTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
rJMFF017G01+          AGATTGCCGACAACCTTAGATGTTTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
rJMSF027D02+                                 TTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
                      ____________________________________________________________
consensus             AGATTGCCGACAACCTTAGATGTTTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
 
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rJMSF007L10+          GTGATGCNGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGNTGCG
rJMSF002H13+          GTGATGCTGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGCTGCG
rJMFF017G01+          GTGATGCTGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGCTGCG
rJMSF027D02+          GTGATGCTGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGCTGCG
                      ____________________________________________________________
consensus             GTGATGCTGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGCTGCG
 
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rJMSF007L10+          GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCGCCTTTCGTGGAAAACC
rJMSF002H13+          GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCGCCTTTCGTGGAAAACC
rJMFF017G01+          GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCCCCTTTCGTGGAAAACC
rJMSF027D02+          GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCGCCTTTCGTGGAAAACC
                      ____________________________________________________________
consensus             GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCGCCTTTCGTGGAAAACC
 
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rJMSF007L10+          TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
rJMSF002H13+          TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
rJMFF017G01+          TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
rJMSF027D02+          TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
                      ____________________________________________________________
consensus             TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
 
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rJMSF007L10+          GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATNTACACGTGTTCA
rJMSF002H13+          GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATCTACACGTGTTCA
rJMFF017G01+          GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATCTACACGTGTTCA
rJMSF027D02+          GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATCTACACGTGTTCA
                      ____________________________________________________________
consensus             GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATCTACACGTGTTCA
 
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rJMSF007L10+          GCACTGTCTACCNGGTTANGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
rJMSF002H13+          GCACTGTCTACCTGGTTATGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
rJMFF017G01+          GCACTGTCTACCTGGTTATGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
rJMSF027D02+          GCACTGTCTACCTGGTTATGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
                      ____________________________________________________________
consensus             GCACTGTCTACCTGGTTATGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
 
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rJMSF007L10+          TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
rJMSF002H13+          TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
rJMFF017G01+          TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
rJMSF027D02+          TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
                      ____________________________________________________________
consensus             TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
 
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rJMSF007L10+          TCTTANTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
rJMSF002H13+          TCTTACTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
rJMFF017G01+          TCTTACTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
rJMSF027D02+          TCTTACTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
                      ____________________________________________________________
consensus             TCTTACTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
 
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rJMSF007L10+          AGACGAACAGAAAGCTTCTTCCGCTNTGAGTNGAATGTGAGTTGAATGATCATCTCCTCC
rJMSF002H13+          AGACGAACAGAAAGCTTCTTCCGCTTTGAGTTGAATGTGAGTTGAATGATCATCTCCTCC
rJMFF017G01+          AGACGAACAGAAAGCTTCTTCCGCTTTGAGTTGAATGTGAGTTGAATGATCATCTCCTCC
rJMSF027D02+          AGACGAACAGAAAGCTTCTTCCGCTTTGAGTTGAATGTGAGTTGAATGATCATCTCCTCC
                      ____________________________________________________________
consensus             AGACGAACAGAAAGCTTCTTCCGCTTTGAGTTGAATGTGAGTTGAATGATCATCTCCTCC
 
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rJMSF007L10+          TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
rJMSF002H13+          TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
rJMFF017G01+          TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
rJMSF027D02+          TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
                      ____________________________________________________________
consensus             TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
 
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rJMSF007L10+          GTTTAC                                                      
rJMSF002H13+          GTTTACTTGCACTTTCTGTTGGTATTTCTAGATCTGGTTT                    
rJMFF017G01+          GTTTACTTGCACTTTCTGTTGGTATTTCTAGATCTGGTTTTTGGTTGTTTAACTTATTCA
rJMSF027D02+          GTTTACTTGCACTTTCTGTTGGTATTTCTAGATCTGGTTTTTGGTTGTTTAACTTATTCA
                      ____________________________________________________________
consensus             GTTTACTTGCACTTTCTGTTGGTATTTCTAGATCTGGTTTTTGGTTGTTTAACTTATTCA
 
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rJMFF017G01+          CATTGCCATAAA                                                
rJMSF027D02+          CATTGCCATAAATTCCTTCTATATTTACAAAATGTAGAAAGGCAAAGCAATGGAGTGCTT
                      ____________________________________________________________
consensus             CATTGCCATAAATTCCTTCTATATTTACAAAATGTAGAAAGGCAAAGCAATGGAGTGCTT