Contig 002875:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017G01Sequence578004528 (3)ref|XP_006351308.1|2e-48PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]694002875 (4)ref|XP_006350258.1|1e-36PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]
JMSF002H13Sequence408004528 (3)ref|XP_006351308.1|1e-36PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]736002875 (4)ref|XP_006350258.1|9e-40PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]
JMSF007L10Sequence446003694 (3)ref|XP_009615892.1|2e-43PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 isoform X2 [Nicotiana 777002875 (4)ref|XP_009758658.1|1e-53PREDICTED: F-box/LRR-repeat protein At5g63520-like, partial [Nicotiana sylvestr
JMSF027D02Sequence632004528 (3)ref|XP_006351308.1|3e-60PREDICTED: F-box/LRR-repeat protein At5g63520-like [Solanum tuberosum]720002875 (4)ref|XP_009758658.1|6e-33PREDICTED: F-box/LRR-repeat protein At5g63520-like, partial [Nicotiana sylvestr

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF007L10+ AAAAAGTAAAATGGAGTACTTTTCAGGAAT
                      ____________________________________________________________
consensus AAAAAGTAAAATGGAGTACTTTTCAGGAAT
 
. : . : . : . : . : . :
rJMSF007L10+ TTCATGAGGTCTTGAGAGGAGACGAGGAGTACTTATATGTCAATGGTCTNGGCATCAAAA
rJMSF002H13+ AGTACTTATATGTCAATGGTCT-GGCATCAAAA
                      ____________________________________________________________
consensus TTCATGAGGTCTTGAGAGGAGACGAGGAGTACTTATATGTCAATGGTCTNGGCATCAAAA
 
. : . : . : . : . : . :
rJMSF007L10+ GTGGAGATTTGTTCCGTTTCTACATTTCAGATTCTAATACTGCACTATCTTCTTGCAAAA
rJMSF002H13+ GTGGAGA-TTGTTCCGTTTCTACATTTCAGATTCTAATACTGCACTATCTTCTTGCAAAA
rJMFF017G01+ ACTGCACTATCTTCTTGCAAAA
                      ____________________________________________________________
consensus GTGGAGATTTGTTCCGTTTCTACATTTCAGATTCTAATACTGCACTATCTTCTTGCAAAA
 
. : . : . : . : . : . :
rJMSF007L10+ AGATTGCCGACAACCTTAGATGTTTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
rJMSF002H13+ AGATTGCCGACAACCTTAGATGTTTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
rJMFF017G01+ AGATTGCCGACAACCTTAGATGTTTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
rJMSF027D02+ TTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
                      ____________________________________________________________
consensus AGATTGCCGACAACCTTAGATGTTTGAAGCAGGAATATGACTGCAGAAATCATCCAAGTG
 
. : . : . : . : . : . :
rJMSF007L10+ GTGATGCNGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGNTGCG
rJMSF002H13+ GTGATGCTGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGCTGCG
rJMFF017G01+ GTGATGCTGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGCTGCG
rJMSF027D02+ GTGATGCTGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGCTGCG
                      ____________________________________________________________
consensus GTGATGCTGTAAACATTGATAAGAAGGCAATTTTAGGTGGCATTTCTTTCTGTTGCTGCG
 
. : . : . : . : . : . :
rJMSF007L10+ GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCGCCTTTCGTGGAAAACC
rJMSF002H13+ GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCGCCTTTCGTGGAAAACC
rJMFF017G01+ GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCCCCTTTCGTGGAAAACC
rJMSF027D02+ GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCGCCTTTCGTGGAAAACC
                      ____________________________________________________________
consensus GCCGCGGTGAGTCGTTTTTTGGACATGCTAATGCTGATAGCTCGCCTTTCGTGGAAAACC
 
. : . : . : . : . : . :
rJMSF007L10+ TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
rJMSF002H13+ TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
rJMFF017G01+ TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
rJMSF027D02+ TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
                      ____________________________________________________________
consensus TCCCCATGGTTCCTCTAGCTGGAAATTTTTGCGCTGGGGAAATTGCTCGTGTGGATTTAA
 
. : . : . : . : . : . :
rJMSF007L10+ GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATNTACACGTGTTCA
rJMSF002H13+ GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATCTACACGTGTTCA
rJMFF017G01+ GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATCTACACGTGTTCA
rJMSF027D02+ GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATCTACACGTGTTCA
                      ____________________________________________________________
consensus GCTCTTACGGGGATGGGCCCGAAGAGCTCTGTTCCATCCGCTGCAATCTACACGTGTTCA
 
. : . : . : . : . : . :
rJMSF007L10+ GCACTGTCTACCNGGTTANGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
rJMSF002H13+ GCACTGTCTACCTGGTTATGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
rJMFF017G01+ GCACTGTCTACCTGGTTATGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
rJMSF027D02+ GCACTGTCTACCTGGTTATGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
                      ____________________________________________________________
consensus GCACTGTCTACCTGGTTATGTCATACACCCCCGCAGGACCTGCACAGCTCTAATGTCTGA
 
. : . : . : . : . : . :
rJMSF007L10+ TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
rJMSF002H13+ TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
rJMFF017G01+ TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
rJMSF027D02+ TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
                      ____________________________________________________________
consensus TCATAACTCCATCCACAAGCCGGAGATAGTTCTCCCCTCTTCCTTGATCACATGTTTACT
 
. : . : . : . : . : . :
rJMSF007L10+ TCTTANTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
rJMSF002H13+ TCTTACTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
rJMFF017G01+ TCTTACTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
rJMSF027D02+ TCTTACTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
                      ____________________________________________________________
consensus TCTTACTACAAAATCCCGCAAAAGTATTGCAGTTCAACAGCATGCTCAGCTCTTCAAGAA
 
. : . : . : . : . : . :
rJMSF007L10+ AGACGAACAGAAAGCTTCTTCCGCTNTGAGTNGAATGTGAGTTGAATGATCATCTCCTCC
rJMSF002H13+ AGACGAACAGAAAGCTTCTTCCGCTTTGAGTTGAATGTGAGTTGAATGATCATCTCCTCC
rJMFF017G01+ AGACGAACAGAAAGCTTCTTCCGCTTTGAGTTGAATGTGAGTTGAATGATCATCTCCTCC
rJMSF027D02+ AGACGAACAGAAAGCTTCTTCCGCTTTGAGTTGAATGTGAGTTGAATGATCATCTCCTCC
                      ____________________________________________________________
consensus AGACGAACAGAAAGCTTCTTCCGCTTTGAGTTGAATGTGAGTTGAATGATCATCTCCTCC
 
. : . : . : . : . : . :
rJMSF007L10+ TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
rJMSF002H13+ TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
rJMFF017G01+ TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
rJMSF027D02+ TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
                      ____________________________________________________________
consensus TCTCCTGGCTTAATATGAAAGATATTTGCTTCCAACTATTTTTCTCCTTCTGGTGTATAT
 
. : . : . : . : . : . :
rJMSF007L10+ GTTTAC
rJMSF002H13+ GTTTACTTGCACTTTCTGTTGGTATTTCTAGATCTGGTTT
rJMFF017G01+ GTTTACTTGCACTTTCTGTTGGTATTTCTAGATCTGGTTTTTGGTTGTTTAACTTATTCA
rJMSF027D02+ GTTTACTTGCACTTTCTGTTGGTATTTCTAGATCTGGTTTTTGGTTGTTTAACTTATTCA
                      ____________________________________________________________
consensus GTTTACTTGCACTTTCTGTTGGTATTTCTAGATCTGGTTTTTGGTTGTTTAACTTATTCA
 
. : . : . : . : . : . :
rJMFF017G01+ CATTGCCATAAA
rJMSF027D02+ CATTGCCATAAATTCCTTCTATATTTACAAAATGTAGAAAGGCAAAGCAATGGAGTGCTT
                      ____________________________________________________________
consensus CATTGCCATAAATTCCTTCTATATTTACAAAATGTAGAAAGGCAAAGCAATGGAGTGCTT