Contig 002870:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026F02Sequence686002870 (4)ref|XP_009770018.1|124PREDICTED: uncharacterized protein LOC104220785 [Nicotiana sylvestris]741002870 (4)ref|XP_009770018.1|124PREDICTED: uncharacterized protein LOC104220785 [Nicotiana sylvestris]
JMSF032B07Sequence682002870 (4)ref|XP_009770018.1|124PREDICTED: uncharacterized protein LOC104220785 [Nicotiana sylvestris]702002870 (4)ref|XP_009770018.1|124PREDICTED: uncharacterized protein LOC104220785 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF032B07-                                                                      A
JMSF026F02-                                                                      A
rJMSF032B07+                                              GAGCAGGAACACAAGCCAACCCAA
rJMSF026F02+                                                                     A
                      ____________________________________________________________
consensus                                                 GAGCAGGAACACAAGCCAACCCAA
 
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JMSF032B07-           ACATCCATTGTTGATTTCTTTCAATCCTTTTTAGAAAAGAAAAAAACAAAACAAAAAACA
JMSF026F02-           ACATCCATTGTTGATTTCTTTCAATCCTTTTTAGAAAAGAAAAAAACAAAACAAAAAACA
rJMSF032B07+          ACATCCATTGTTGATTTCTTTCAATCCTTTTTAGAAAAGAAAAAAACAAAACAAAAAACA
rJMSF026F02+          ACATCCATTGTTGATTTCTTTCAATCCTTTTTAGAAAAGAAAAAAACAAAACAAAAAACA
                      ____________________________________________________________
consensus             ACATCCATTGTTGATTTCTTTCAATCCTTTTTAGAAAAGAAAAAAACAAAACAAAAAACA
 
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JMSF032B07-           TGCTGGGAATTTTGAATGAGACCATAAAAGCTGGATTGCTGTGCCATAATCCACAGAACA
JMSF026F02-           TGCTGGGAATTTTGAATGAGACCATAAAAGCTGGATTGCTGTGCCATAATCCACAGAACA
rJMSF032B07+          TGCTGGGAATTTTGAATGAGACCATAAAAGCTGGATTGCTGTGCCATAATCCACAGAACA
rJMSF026F02+          TGCTGGGAATTTTGAATGAGACCATAAAAGCTGGATTGCTGTGCCATAATCCACAGAACA
                      ____________________________________________________________
consensus             TGCTGGGAATTTTGAATGAGACCATAAAAGCTGGATTGCTGTGCCATAATCCACAGAACA
 
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JMSF032B07-           AGTTCATTGGAAAAGAGAGAGCAACATTGCATCCTCCACCACCATTACTTGGGCAAAGTG
JMSF026F02-           AGTTCATTGGAAAAGAGAGAGCAACATTGCATCCTCCACCACCATTACTTGGGCAAAGTG
rJMSF032B07+          AGTTCATTGGAAAAGAGAGAGCAACATTGCATCCTCCACCACCATTACTTGGGCAAAGTG
rJMSF026F02+          AGTTCATTGGAAAAGAGAGAGCAACATTGCATCCTCCACCACCATTACTTGGGCAAAGTG
                      ____________________________________________________________
consensus             AGTTCATTGGAAAAGAGAGAGCAACATTGCATCCTCCACCACCATTACTTGGGCAAAGTG
 
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JMSF032B07-           TGCAGTTTATGCAATTCCACATCCGAAATGCAACTATGATTTGTGAGGTGAGAAGAAGGA
JMSF026F02-           TGCAGTTTATGCAATTCCACATCCGAAATGCAACTATGATTTGTGAGGTGAGAAGAAGGA
rJMSF032B07+          TGCAGTTTATGCAATTCCACATCCGAAATGCAACTATGATTTGTGAGGTGAGAAGAAGGA
rJMSF026F02+          TGCAGTTTATGCAATTCCACATCCGAAATGCAACTATGATTTGTGAGGTGAGAAGAAGGA
                      ____________________________________________________________
consensus             TGCAGTTTATGCAATTCCACATCCGAAATGCAACTATGATTTGTGAGGTGAGAAGAAGGA
 
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JMSF032B07-           GAAGGGCAGACATAAGGACAGACACGTATGTGCTAATGGAACCTGGGAAGGAGGAGGAGT
JMSF026F02-           GAAGGGCAGACATAAGGACAGACACGTATGTGCTAATGGAACCTGGGAAGGAGGAGGAGT
rJMSF032B07+          GAAGGGCAGACATAAGGACAGACACGTATGTGCTAATGGAACCTGGGAAGGAGGAGGAGT
rJMSF026F02+          GAAGGGCAGACATAAGGACAGACACGTATGTGCTAATGGAACCTGGGAAGGAGGAGGAGT
                      ____________________________________________________________
consensus             GAAGGGCAGACATAAGGACAGACACGTATGTGCTAATGGAACCTGGGAAGGAGGAGGAGT
 
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JMSF032B07-           TCGTATCGGAGGAAGAACTGAGAGAGAGGTTGAAAGGGTGGCTTCAAAATTGGCCGGCGA
JMSF026F02-           TCGTATCGGAGGAAGAACTGAGAGAGAGGTTGAAAGGGTGGCTTCAAAATTGGCCGGCGA
rJMSF032B07+          TCGTATCGGAGGAAGAACTGAGAGAGAGGTTGAAAGGGTGGCTTCAAAATTGGCCGGCGA
rJMSF026F02+          TCGTATCGGAGGAAGAACTGAGAGAGAGGTTGAAAGGGTGGCTTCAAAATTGGCCGGCGA
                      ____________________________________________________________
consensus             TCGTATCGGAGGAAGAACTGAGAGAGAGGTTGAAAGGGTGGCTTCAAAATTGGCCGGCGA
 
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JMSF032B07-           ATGGGTTGCCGGCGGACCTAGCGCGGTTCGAAAACATTGACGACGCGGTGGAGTATTTGG
JMSF026F02-           ATGGGTTGCCGGCGGACCTAGCGCGGTTCGAAAACATTGACGACGCGGTGGAGTATTTGG
rJMSF032B07+          ATGGGTTGCCGGCGGACCTAGCGCGGTTCGAAAACATTGACGACGCGGTGGAGTATTTGG
rJMSF026F02+          ATGGGTTGCCGGCGGACCTAGCGCGGTTCGAAAACATTGACGACGCGGTGGAGTATTTGG
                      ____________________________________________________________
consensus             ATGGGTTGCCGGCGGACCTAGCGCGGTTCGAAAACATTGACGACGCGGTGGAGTATTTGG
 
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JMSF032B07-           TGAAGTGCGTTTGTGAACTTGAAATCGATGGAGACGCTGGTTCGCTTCAGTGGTTCGAAG
JMSF026F02-           TGAAGTGCGTTTGTGAACTTGAAATCGATGGAGACGCTGGTTCGCTTCAGTGGTTCGAAG
rJMSF032B07+          TGAAGTGCGTTTGTGAACTTGAAATCGATGGAGACGCTGGTTCGCTTCAGTGGTTCGAAG
rJMSF026F02+          TGAAGTGCGTTTGTGAACTTGAAATCGATGGAGACGCTGGTTCGCTTCAGTGGTTCGAAG
                      ____________________________________________________________
consensus             TGAAGTGCGTTTGTGAACTTGAAATCGATGGAGACGCTGGTTCGCTTCAGTGGTTCGAAG
 
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JMSF032B07-           TTCGTCTACAACAGCAGGACGACGACATGGCCGATTGAGGTTGGCACGGAGTTAGTTCAT
JMSF026F02-           TTCGTCTACAACAGCAGGACGACGACATGGCCGATTGAGGTTGGCACGGAGTTAGTTCAT
rJMSF032B07+          TTCGTCTACAACAGCAGGACGACGACATGGCCGATTGAGGTTGGCACGGAGTTAGTTCAT
rJMSF026F02+          TTCGTCTACAACAGCAGGACGACGACATGGCCGATTGAGGTTGGCACGGAGTTAGTTCAT
                      ____________________________________________________________
consensus             TTCGTCTACAACAGCAGGACGACGACATGGCCGATTGAGGTTGGCACGGAGTTAGTTCAT
 
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JMSF032B07-           TGGTTCAGTAGACAGTATTTAGAAGAAGAGATCAAGATTCGAACTTTGGCAATGACTATG
JMSF026F02-           TGGTTCAGTAGACAGTATTTAGAAGAAGAGATCAAGATTCGAACTTTGGCAATGACTATG
rJMSF032B07+          TGGTTCAGTAGACAGTATTTAGAAGAAGAGATCAAGATTCGAACTTTGGCAATGACTATG
rJMSF026F02+          TGGTTCAGTAGACAGTATTTAGAAGAAGAGATCAAGATTCGAACTTTGGCAATGACTATG
                      ____________________________________________________________
consensus             TGGTTCAGTAGACAGTATTTAGAAGAAGAGATCAAGATTCGAACTTTGGCAATGACTATG
 
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JMSF032B07-           TTAAAGTTATGTCTAAAGTTGACAAATCACTTGTGCGACATTTGATCTGTCTGCTGAG  
JMSF026F02-           TTAAAGTTATGTCTAAAGTTGACAAATCACTTGCGCGACATTTGATCTGTCTGCTGAG  
rJMSF032B07+          TTAAAGTTATGTCTAAAGTTGACAAATCACTTGTGCGACATTTGATCTGTCTGCTGAGCA
rJMSF026F02+          TTAAAGTTATGTCTAAAGTTGACAAATCACTTGCGCGACATTTGATCTGTCTGCTGAGCA
                      ____________________________________________________________
consensus             TTAAAGTTATGTCTAAAGTTGACAAATCACTTGTGCGACATTTGATCTGTCTGCTGAGCA
 
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rJMSF032B07+          AATTGAATGTAAAAAATT                                          
rJMSF026F02+          AATTGAATGTAAAAAATTGTATATTCTATACATTATGTATTGTTTTCGTGCAACACACAT
                      ____________________________________________________________
consensus             AATTGAATGTAAAAAATTGTATATTCTATACATTATGTATTGTTTTCGTGCAACACACAT