Contig 002866:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020F18Sequence655000768 (3)ref|XP_009798272.1|8e-45PREDICTED: probable xyloglucan glycosyltransferase 6 [Nicotiana sylvestris]753002866 (3)ref|XP_003635418.1|9e-20PREDICTED: probable xyloglucan glycosyltransferase 6 [Vitis vinifera]
JMSF025N03Sequence662000768 (3)ref|XP_009798272.1|9e-45PREDICTED: probable xyloglucan glycosyltransferase 6 [Nicotiana sylvestris]748002866 (3)gb|AFK48550.1|1e-18unknown [Lotus japonicus]
JMSF050M19Sequence655000768 (3)ref|XP_009798272.1|1e-48PREDICTED: probable xyloglucan glycosyltransferase 6 [Nicotiana sylvestris]718002866 (3)ref|XP_003635418.1|1e-23PREDICTED: probable xyloglucan glycosyltransferase 6 [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020F18+ AATTGGGATGTTCTTATGAGTGGATTGTTAC
                      ____________________________________________________________
consensus AATTGGGATGTTCTTATGAGTGGATTGTTAC
 
. : . : . : . : . : . :
rJMSF020F18+ TAAGGAAACTAGGCAGGTCTTCAGAAGCCGATTTAGTAGGCATGTCGGAAACTGATTCTG
rJMSF050M19+ AAACTAGGCAGGTCTTCAGAAGCCGATTTAGTAGGCATGTCGGAAACTGATTCTG
rJMSF025N03+ ATTTAGTAGGCATGTCGGAAACTGATTCTG
                      ____________________________________________________________
consensus TAAGGAAACTAGGCAGGTCTTCAGAAGCCGATTTAGTAGGCATGTCGGAAACTGATTCTG
 
. : . : . : . : . : . :
rJMSF020F18+ AACCACTACTGCAGAATAGTTCCGTCCACAGATCCTCCTCGGATTCTGGTCTTGCCGAGC
rJMSF050M19+ AACCACTACTGCAGAATAGTTCCGTCCACAGATCCTCCTCGGATTCTGGTCTTGCCGAGC
rJMSF025N03+ AACCACTACTGCAGAATAGTTCCGTCCACAGATCCTCCTCGGATTCTGGTCTTGCCGAGC
                      ____________________________________________________________
consensus AACCACTACTGCAGAATAGTTCCGTCCACAGATCCTCCTCGGATTCTGGTCTTGCCGAGC
 
. : . : . : . : . : . :
rJMSF020F18+ TCAGCAAACTAGAAATGACCAGAAAAACAAAAAAGAAGAGGAAAAACCGGTTATACAGAA
rJMSF050M19+ TCAGCAAACTAGAAATGACCAGAAAAACAAAAAAGAAGAGGAAAAACCGGTTATACAGAA
rJMSF025N03+ TCAGCAAACTAGAAATGACCAGAAAAACAAAAAAGAAGAGGAAAAACCGGTTATACAGAA
                      ____________________________________________________________
consensus TCAGCAAACTAGAAATGACCAGAAAAACAAAAAAGAAGAGGAAAAACCGGTTATACAGAA
 
. : . : . : . : . : . :
rJMSF020F18+ AAGAGCTCGCTCTTTCGTTTATTTTGTTAACTGCAGCATTGAGAAGCCTTTTGACTGCAC
rJMSF050M19+ AAGAGCTCGCTCTTTCGTTTATTTTGTTAACTGCAGCATTGAGAAGCCTTTTGACTGCAC
rJMSF025N03+ AAGAGCTCGCTCTTTCGTTTATTTTGTTAACTGCAGCATTGAGAAGCCTTTTGACTGCAC
                      ____________________________________________________________
consensus AAGAGCTCGCTCTTTCGTTTATTTTGTTAACTGCAGCATTGAGAAGCCTTTTGACTGCAC
 
. : . : . : . : . : . :
rJMSF020F18+ AGGGCATTCACTTCTACTTCCTGCTCTTTCAAGGGATCACTTTTCTAGTAGTCGGTCTGG
rJMSF050M19+ AGGGCATTCACTTCTACTTCCTGCTCTTTCAAGGGATCACTTTTCTAGTAGTCGGTCTGG
rJMSF025N03+ AGGGCATTCACTTCTACTTCCTGCTCTTTCAAGGGATCACTTTTCTAGTAGTCGGTCTGG
                      ____________________________________________________________
consensus AGGGCATTCACTTCTACTTCCTGCTCTTTCAAGGGATCACTTTTCTAGTAGTCGGTCTGG
 
. : . : . : . : . : . :
rJMSF020F18+ ATTTAATTGGAGAACAGGTGAACTAATCACTCTTTCCTCATTCCTCTGCACACTGTTTTG
rJMSF050M19+ ATTTAATTGGAGAACAGGTGAACTAATCACTCTTTCCTCATTCCTCTGCACACTGTTTTG
rJMSF025N03+ ATTTAATTGGAGAACAGGTGAACTAATCACTCTTTCCTCATTCCTCTGCACACTGTTTTG
                      ____________________________________________________________
consensus ATTTAATTGGAGAACAGGTGAACTAATCACTCTTTCCTCATTCCTCTGCACACTGTTTTG
 
. : . : . : . : . : . :
rJMSF020F18+ GCATGTATTCTATTGAGACGAAAGTTCAGCCTTCGATATTAGTCCACAAATGTCGGACAA
rJMSF050M19+ GCATGTATTCTATTGAGACGAAAGTTCAGCCTTCGATATTAGTCCACAAATGTCGGACAA
rJMSF025N03+ GCATGTATTCTATTGAGACG-AATTTCAGCCTTCGATATTAGTCCACAAATGTCGGACAA
                      ____________________________________________________________
consensus GCATGTATTCTATTGAGACGAAAGTTCAGCCTTCGATATTAGTCCACAAATGTCGGACAA
 
. : . : . : . : . : . :
rJMSF020F18+ TATTCTTTCTTGGCTGGTAAGGAGTCCAGATTACAAAACCATTATCATACCTCAATATTG
rJMSF050M19+ TATTCTTTCTTGGCTGGTAAGGAGTCCAGATTACAAAACCATTATCATACCTCAATATTG
rJMSF025N03+ TATTCTTTCTTGGCTGGTAAGGAGTCCAGATTACAAAACCATTATCATACCTCAATATTG
                      ____________________________________________________________
consensus TATTCTTTCTTGGCTGGTAAGGAGTCCAGATTACAAAACCATTATCATACCTCAATATTG
 
. : . : . : . : . : . :
rJMSF020F18+ GCAGGTGATTTCTTCAAAATTTGCAGTGTTGTGTTCAAGAGATATGATAGAGTTGAGTGC
rJMSF050M19+ GCAGGTGATTTCTTCAAAATTTGCAGTGTTGTGTTCAAGAGATATGATAGAGTTGAGTGC
rJMSF025N03+ GCAGGTGATTTCTTC-AAATTTGCAGTGTTGTGTTCAAGAGATATGATAGAGTTGAGTGC
                      ____________________________________________________________
consensus GCAGGTGATTTCTTCAAAATTTGCAGTGTTGTGTTCAAGAGATATGATAGAGTTGAGTGC
 
. : . : . : . : . : . :
rJMSF020F18+ CAGTGGGATTGGCAATTCATCTGATTGTAATTTATTATAGAATTATCATTATTATTATTA
rJMSF050M19+ CAGTGGGATTGGCAATTCATCTGATTGTAATTTATTATAGAATTATCATTATTATTATTA
rJMSF025N03+ CAGTGGGATTGGCAATTCATCTGATTGTAATTTATTATAGAATTATCATTATTATTATTA
                      ____________________________________________________________
consensus CAGTGGGATTGGCAATTCATCTGATTGTAATTTATTATAGAATTATCATTATTATTATTA
 
. : . : . : . : . : . :
rJMSF020F18+ TCATAGGCTGATAGGCATACTACCTCTGGCCGTTTGATAGCTTATAAAAGTGTTCATTCT
rJMSF050M19+ TCATAGGCTGATAGGCATACTACCTCTGGCCGTTTGATAGCTTATAAAAGTGTTCATTCT
rJMSF025N03+ TCATAGGCTGATAGGCATACTACCTCTGGCCGTTTGATAGCTTATAAAAGTGTTCATTCT
                      ____________________________________________________________
consensus TCATAGGCTGATAGGCATACTACCTCTGGCCGTTTGATAGCTTATAAAAGTGTTCATTCT
 
. : . : . : . : . : . :
rJMSF020F18+ TTACATTTTTTGGGTTCCACCATGCCAGTATCGCATTGACAGGTTCTGTAGTCTGTACAA
rJMSF050M19+ TTACATTTTTTGGGTTCCACCATGCCAGTATCGCATTGACAGGTTCTGTAGTCTGTACAA
rJMSF025N03+ TTACATTTTTTGGGTTCCACCATGCCAGTATCGCATTGACAGGTTCTGTAGTCTGTACAA
                      ____________________________________________________________
consensus TTACATTTTTTGGGTTCCACCATGCCAGTATCGCATTGACAGGTTCTGTAGTCTGTACAA
 
. : . : . : . : . : . :
rJMSF020F18+ TT
rJMSF050M19+ TT
rJMSF025N03+ TTATATAGTCCAATTTTTTGGGAGAGAGATATGGAACATTGTTAGATCACTATTATGCCC
                      ____________________________________________________________
consensus TTATATAGTCCAATTTTTTGGGAGAGAGATATGGAACATTGTTAGATCACTATTATGCCC