| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF020F18 | Sequence | 655 | 000768 (3) | ref|XP_009798272.1| | 8e-45 | PREDICTED: probable xyloglucan glycosyltransferase 6 [Nicotiana sylvestris] | 753 | 002866 (3) | ref|XP_003635418.1| | 9e-20 | PREDICTED: probable xyloglucan glycosyltransferase 6 [Vitis vinifera] |
| JMSF025N03 | Sequence | 662 | 000768 (3) | ref|XP_009798272.1| | 9e-45 | PREDICTED: probable xyloglucan glycosyltransferase 6 [Nicotiana sylvestris] | 748 | 002866 (3) | gb|AFK48550.1| | 1e-18 | unknown [Lotus japonicus] |
| JMSF050M19 | Sequence | 655 | 000768 (3) | ref|XP_009798272.1| | 1e-48 | PREDICTED: probable xyloglucan glycosyltransferase 6 [Nicotiana sylvestris] | 718 | 002866 (3) | ref|XP_003635418.1| | 1e-23 | PREDICTED: probable xyloglucan glycosyltransferase 6 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF020F18+ AATTGGGATGTTCTTATGAGTGGATTGTTAC
____________________________________________________________
consensus AATTGGGATGTTCTTATGAGTGGATTGTTAC
. : . : . : . : . : . :
rJMSF020F18+ TAAGGAAACTAGGCAGGTCTTCAGAAGCCGATTTAGTAGGCATGTCGGAAACTGATTCTG
rJMSF050M19+ AAACTAGGCAGGTCTTCAGAAGCCGATTTAGTAGGCATGTCGGAAACTGATTCTG
rJMSF025N03+ ATTTAGTAGGCATGTCGGAAACTGATTCTG
____________________________________________________________
consensus TAAGGAAACTAGGCAGGTCTTCAGAAGCCGATTTAGTAGGCATGTCGGAAACTGATTCTG
. : . : . : . : . : . :
rJMSF020F18+ AACCACTACTGCAGAATAGTTCCGTCCACAGATCCTCCTCGGATTCTGGTCTTGCCGAGC
rJMSF050M19+ AACCACTACTGCAGAATAGTTCCGTCCACAGATCCTCCTCGGATTCTGGTCTTGCCGAGC
rJMSF025N03+ AACCACTACTGCAGAATAGTTCCGTCCACAGATCCTCCTCGGATTCTGGTCTTGCCGAGC
____________________________________________________________
consensus AACCACTACTGCAGAATAGTTCCGTCCACAGATCCTCCTCGGATTCTGGTCTTGCCGAGC
. : . : . : . : . : . :
rJMSF020F18+ TCAGCAAACTAGAAATGACCAGAAAAACAAAAAAGAAGAGGAAAAACCGGTTATACAGAA
rJMSF050M19+ TCAGCAAACTAGAAATGACCAGAAAAACAAAAAAGAAGAGGAAAAACCGGTTATACAGAA
rJMSF025N03+ TCAGCAAACTAGAAATGACCAGAAAAACAAAAAAGAAGAGGAAAAACCGGTTATACAGAA
____________________________________________________________
consensus TCAGCAAACTAGAAATGACCAGAAAAACAAAAAAGAAGAGGAAAAACCGGTTATACAGAA
. : . : . : . : . : . :
rJMSF020F18+ AAGAGCTCGCTCTTTCGTTTATTTTGTTAACTGCAGCATTGAGAAGCCTTTTGACTGCAC
rJMSF050M19+ AAGAGCTCGCTCTTTCGTTTATTTTGTTAACTGCAGCATTGAGAAGCCTTTTGACTGCAC
rJMSF025N03+ AAGAGCTCGCTCTTTCGTTTATTTTGTTAACTGCAGCATTGAGAAGCCTTTTGACTGCAC
____________________________________________________________
consensus AAGAGCTCGCTCTTTCGTTTATTTTGTTAACTGCAGCATTGAGAAGCCTTTTGACTGCAC
. : . : . : . : . : . :
rJMSF020F18+ AGGGCATTCACTTCTACTTCCTGCTCTTTCAAGGGATCACTTTTCTAGTAGTCGGTCTGG
rJMSF050M19+ AGGGCATTCACTTCTACTTCCTGCTCTTTCAAGGGATCACTTTTCTAGTAGTCGGTCTGG
rJMSF025N03+ AGGGCATTCACTTCTACTTCCTGCTCTTTCAAGGGATCACTTTTCTAGTAGTCGGTCTGG
____________________________________________________________
consensus AGGGCATTCACTTCTACTTCCTGCTCTTTCAAGGGATCACTTTTCTAGTAGTCGGTCTGG
. : . : . : . : . : . :
rJMSF020F18+ ATTTAATTGGAGAACAGGTGAACTAATCACTCTTTCCTCATTCCTCTGCACACTGTTTTG
rJMSF050M19+ ATTTAATTGGAGAACAGGTGAACTAATCACTCTTTCCTCATTCCTCTGCACACTGTTTTG
rJMSF025N03+ ATTTAATTGGAGAACAGGTGAACTAATCACTCTTTCCTCATTCCTCTGCACACTGTTTTG
____________________________________________________________
consensus ATTTAATTGGAGAACAGGTGAACTAATCACTCTTTCCTCATTCCTCTGCACACTGTTTTG
. : . : . : . : . : . :
rJMSF020F18+ GCATGTATTCTATTGAGACGAAAGTTCAGCCTTCGATATTAGTCCACAAATGTCGGACAA
rJMSF050M19+ GCATGTATTCTATTGAGACGAAAGTTCAGCCTTCGATATTAGTCCACAAATGTCGGACAA
rJMSF025N03+ GCATGTATTCTATTGAGACG-AATTTCAGCCTTCGATATTAGTCCACAAATGTCGGACAA
____________________________________________________________
consensus GCATGTATTCTATTGAGACGAAAGTTCAGCCTTCGATATTAGTCCACAAATGTCGGACAA
. : . : . : . : . : . :
rJMSF020F18+ TATTCTTTCTTGGCTGGTAAGGAGTCCAGATTACAAAACCATTATCATACCTCAATATTG
rJMSF050M19+ TATTCTTTCTTGGCTGGTAAGGAGTCCAGATTACAAAACCATTATCATACCTCAATATTG
rJMSF025N03+ TATTCTTTCTTGGCTGGTAAGGAGTCCAGATTACAAAACCATTATCATACCTCAATATTG
____________________________________________________________
consensus TATTCTTTCTTGGCTGGTAAGGAGTCCAGATTACAAAACCATTATCATACCTCAATATTG
. : . : . : . : . : . :
rJMSF020F18+ GCAGGTGATTTCTTCAAAATTTGCAGTGTTGTGTTCAAGAGATATGATAGAGTTGAGTGC
rJMSF050M19+ GCAGGTGATTTCTTCAAAATTTGCAGTGTTGTGTTCAAGAGATATGATAGAGTTGAGTGC
rJMSF025N03+ GCAGGTGATTTCTTC-AAATTTGCAGTGTTGTGTTCAAGAGATATGATAGAGTTGAGTGC
____________________________________________________________
consensus GCAGGTGATTTCTTCAAAATTTGCAGTGTTGTGTTCAAGAGATATGATAGAGTTGAGTGC
. : . : . : . : . : . :
rJMSF020F18+ CAGTGGGATTGGCAATTCATCTGATTGTAATTTATTATAGAATTATCATTATTATTATTA
rJMSF050M19+ CAGTGGGATTGGCAATTCATCTGATTGTAATTTATTATAGAATTATCATTATTATTATTA
rJMSF025N03+ CAGTGGGATTGGCAATTCATCTGATTGTAATTTATTATAGAATTATCATTATTATTATTA
____________________________________________________________
consensus CAGTGGGATTGGCAATTCATCTGATTGTAATTTATTATAGAATTATCATTATTATTATTA
. : . : . : . : . : . :
rJMSF020F18+ TCATAGGCTGATAGGCATACTACCTCTGGCCGTTTGATAGCTTATAAAAGTGTTCATTCT
rJMSF050M19+ TCATAGGCTGATAGGCATACTACCTCTGGCCGTTTGATAGCTTATAAAAGTGTTCATTCT
rJMSF025N03+ TCATAGGCTGATAGGCATACTACCTCTGGCCGTTTGATAGCTTATAAAAGTGTTCATTCT
____________________________________________________________
consensus TCATAGGCTGATAGGCATACTACCTCTGGCCGTTTGATAGCTTATAAAAGTGTTCATTCT
. : . : . : . : . : . :
rJMSF020F18+ TTACATTTTTTGGGTTCCACCATGCCAGTATCGCATTGACAGGTTCTGTAGTCTGTACAA
rJMSF050M19+ TTACATTTTTTGGGTTCCACCATGCCAGTATCGCATTGACAGGTTCTGTAGTCTGTACAA
rJMSF025N03+ TTACATTTTTTGGGTTCCACCATGCCAGTATCGCATTGACAGGTTCTGTAGTCTGTACAA
____________________________________________________________
consensus TTACATTTTTTGGGTTCCACCATGCCAGTATCGCATTGACAGGTTCTGTAGTCTGTACAA
. : . : . : . : . : . :
rJMSF020F18+ TT
rJMSF050M19+ TT
rJMSF025N03+ TTATATAGTCCAATTTTTTGGGAGAGAGATATGGAACATTGTTAGATCACTATTATGCCC
____________________________________________________________
consensus TTATATAGTCCAATTTTTTGGGAGAGAGATATGGAACATTGTTAGATCACTATTATGCCC