| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF018P10 | Sequence | 342 | 005049 (5) | ref|XP_004244442.1| | 3e-12 | PREDICTED: beta-amylase 8 isoform X2 [Solanum lycopersicum] | 149 | 002865 (5) | |||
| JMSF024E09 | Sequence | 726 | 005049 (5) | ref|XP_004244442.1| | 2e-67 | PREDICTED: beta-amylase 8 isoform X2 [Solanum lycopersicum] | 677 | 002865 (5) | ref|XP_006361593.1| | 4e-69 | PREDICTED: beta-amylase 8-like, partial [Solanum tuberosum] |
| JMSF025L13 | Sequence | 704 | 005049 (5) | ref|XP_010324502.1| | 1e-63 | PREDICTED: beta-amylase 8 isoform X1 [Solanum lycopersicum] | 282 | 002865 (5) | |||
| JMSF030D13 | Sequence | 708 | 005049 (5) | ref|XP_004244442.1| | 2e-64 | PREDICTED: beta-amylase 8 isoform X2 [Solanum lycopersicum] | 471 | 002865 (5) | ref|XP_010324505.1| | 3e-18 | PREDICTED: beta-amylase 8 isoform X5 [Solanum lycopersicum] |
| JMSF041D16 | Sequence | 786 | 018997 | ref|XP_010324502.1| | 5e-22 | PREDICTED: beta-amylase 8 isoform X1 [Solanum lycopersicum] | 712 | 002865 (5) | ref|XP_002270680.1| | 2e-64 | PREDICTED: beta-amylase 8 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF041D16+ ACATCAGACTAGATTTTTCCGTG
____________________________________________________________
consensus ACATCAGACTAGATTTTTCCGTG
. : . : . : . : . : . :
rJMSF041D16+ AACAAGGTGATTATGATAGCTACTATGGACGATTCTTCTTCCAGTGGTATACCCAGGCCT
rJMSF024E09+ CTATGGACGATTCTTCCTCCAGTGGTATACCCAGGCCT
____________________________________________________________
consensus AACAAGGTGATTATGATAGCTACTATGGACGATTCTTCTTCCAGTGGTATACCCAGGCCT
. : . : . : . : . : . :
rJMSF041D16+ TAATAGATCATGCTGATATCATTCTGTCAGCTGCAACTAAAGCATTTGATGAAACACCGT
rJMSF024E09+ TAATAGATCATGCTGATACCATTCTGTCAGCTGCAACTGAAGCATTTGATGAAACACCGT
____________________________________________________________
consensus TAATAGATCATGCTGATATCATTCTGTCAGCTGCAACTGAAGCATTTGATGAAACACCGT
. : . : . : . : . : . :
rJMSF041D16+ TAGTTGTGAAGATTCCGGGAATTCATTGGTGGTATTTAACGAGCAGCCATGCAGCCGAAC
rJMSF024E09+ TAGTTGTGAAGATTCCGGGAATTCATTGGTGGTATAAAGCGAGCAGCCATGCAGCAGAAC
____________________________________________________________
consensus TAGTTGTGAAGATTCCGGGAATTCATTGGTGGTATTTAGCGAGCAGCCATGCAGCCGAAC
. : . : . : . : . : . :
rJMSF041D16+ TCACTGCTGGATATTACAACACATCAAACCGAGATGGCTATTCTCCACTCTTTGAGGTCC
rJMSF024E09+ TCACTGCTGGATATTACAACACATCAAACCGAGATGGCTATTCTCCNCTCTTTGAGGTCC
____________________________________________________________
consensus TCACTGCTGGATATTACAACACATCAAACCGAGATGGCTATTCTCCACTCTTTGAGGTCC
. : . : . : . : . : . :
rJMSF041D16+ TCAAAAAAACACAATGCGACAATGAAGTTAGTCAGCAAGGAAACACAGATTTCACCCGGC
rJMSF030D13+ AAAAAACNCAATGCGACNGTGAAGTTNGTCAGCAAGGAAACNCNGATTTCNCCCCNC
rJMSF024E09+ TC-AAAAAACNCAATGCGACAGTGAAGTTAGTCAGCAAGGAAACNCAGATTTCNCCCCNC
____________________________________________________________
consensus TCAAAAAAACACAATGCGACAGTGAAGTTAGTCAGCAAGGAAACACAGATTTCACCCCGC
. : . : . : . : . : . :
rJMSF041D16+ GATCTTGTTGAAGCATATGCAGATCCCATTGGGTTGTGTTGGCAGGTCCTAAATGGTGCT
rJMSF030D13+ GATNTTGTTCAAGCATATGCAGATCCCAATGGCTTGTGTTGGCNGGTCCTAAATGGTGCT
rJMSF024E09+ GATCTTGTTCAAGCATATGCAGATCCCAATGGCTTGTGTTGGCAGGTCCTAAATGGTGCT
____________________________________________________________
consensus GATCTTGTTCAAGCATATGCAGATCCCAATGGCTTGTGTTGGCAGGTCCTAAATGGTGCT
. : . : . : . : . : . :
rJMSF041D16+ TGGGATAAGGGAGTAGCTATAGCTGGTCATAACGCCCCCCGGGGTTATGATAGAGAAACA
rJMSF030D13+ TGGGAAAAGGGNGTAGCTATAGCTGGTCATAACGCCCCCGGGGNTTNTGATAGNGAAACN
rJMSF024E09+ TGGGAAAAGGGAGTAGCTATAGCTGGTCATAACGCCCCCGGGGATTATGATAGAGAAACA
____________________________________________________________
consensus TGGGAAAAGGGAGTAGCTATAGCTGGTCATAACGCCCCCGGGGGTTATGATAGAGAAACA
. : . : . : . : . : . :
rJMSF041D16+ TTTATGAGACTCGTGGAGACATCAAAGCCAAGAAATGATCC
rJMSF030D13+ TTTNTGNGACTNGNGGNGACATCAAAGCCNAGAAATGATCCCTATNGNCNCCNCTCCNCN
rJMSF024E09+ TTTATGAGACTCGTGGAGACATCAAAGCCAAGAAATGATCCCTATCGACACCNCTCCACN
rJMSF025L13+ ACATCAAAGCCAAGAAATGATCCCTATNGNCNCCNCTTCACN
____________________________________________________________
consensus TTTATGAGACTCGTGGAGACATCAAAGCCAAGAAATGATCCCTATCGACACCNCTCCACN
. : . : . : . : . : . :
rJMSF030D13+ TTNTTTGTACTCGAACGGCCNTGGCAGNGGNTTCAAACGGCNGNGAACNTNTCAGAATTA
rJMSF024E09+ TTCTTTGTACTCGAACGGCCATGGCAGCGGATTCAAACGGCAGAGAACATCTCAGAATTA
rJMSF025L13+ TTNTTTGTACTCGAACGGCCNTGGCAGCGGATTCAAACGGCNGAGNACATNTNAGAATTN
____________________________________________________________
consensus TTCTTTGTACTCGAACGGCCATGGCAGCGGATTCAAACGGCAGAGAACATCTCAGAATTA
. : . : . : . : . : . :
rJMSF030D13+ GAATATTTTGTTAAATGCNTGCNTGGCTATGCATAGCAGAGCCGTTCCNATAAAAATTTG
rJMSF024E09+ GAATATTTTGTTAAATGCNTGCATGGCTATGCATAGCAGAGCCGTTCCAATAAAAATTTG
rJMSF025L13+ GAATATTTTGTTAAATGCANGCNNGGCTATGCATAGCNGAGCCGTTCCNATAAAAATTTG
____________________________________________________________
consensus GAATATTTTGTTAAATGCATGCATGGCTATGCATAGCAGAGCCGTTCCAATAAAAATTTG
. : . : . : . : . : . :
rJMSF030D13+ GGTCATGTACNATATNTTAATTTGTAGCCTTTTTTTTTTTCAAGTAATTTCGATATATAA
rJMSF024E09+ GGTCATGTACAATATCTTAATTTGTAGCCTTTTTTT-TTTCAAGTAATTTCGATATATAA
rJMSF018P10+ TTTTTTTTTTCAAGTAATTTCGATATATAA
rJMSF025L13+ GGTCATGTACAATATNTTAATTTGTAGCCTTTTTTTNTTTCAAGTAATTTCGATATATAA
____________________________________________________________
consensus GGTCATGTACAATATCTTAATTTGTAGCCTTTTTTTTTTTCAAGTAATTTCGATATATAA
. : . : . : . : . : . :
rJMSF030D13+ ATAGTAGTTGTTCAAAAAGCTGTATCAAAATATAAATAT
rJMSF024E09+ ATAGTAGTTGTTCAAAAAGCTGTATCAAAATATAAATAT
rJMSF018P10+ ATAGTAGTTGTTCAAAAAGCTGTATCAAAATATAAATATTGTATAAAAATACTTC
rJMSF025L13+ ATAGTAGTTGTTCAAAAAGCTGTATCAAAATATAAATATTGTATAAAAATACTTCTAAAA
____________________________________________________________
consensus ATAGTAGTTGTTCAAAAAGCTGTATCAAAATATAAATATTGTATAAAAATACTTCTAAAA