Contig 002863:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015A20Sequence230003838 (9)ref|XP_011074301.1|3e-07PREDICTED: receptor-like protein kinase HAIKU2 [Sesamum indicum]751002863 (3)ref|XP_009769216.1|6e-129PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana sylvestris]
JMSF025H12Sequence690003838 (9)ref|XP_004238042.1|3e-45PREDICTED: receptor-like protein kinase HAIKU2 [Solanum lycopersicum]773002863 (3)ref|XP_009769216.1|2e-135PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana sylvestris]
JMSF042F16Sequence766003838 (9)ref|XP_004238042.1|7e-55PREDICTED: receptor-like protein kinase HAIKU2 [Solanum lycopersicum]512002863 (3)ref|XP_009769216.1|2e-58PREDICTED: receptor-like protein kinase HAIKU2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF015A20+                                     TCGAAAGAGTTCGACGCGGAAGTCCAAA-CNNT
rJMSF025H12+                CTCCGGGAACGTGCGGCGAAATCGAAAGAGTTCGACGCGGAAGTCCAAACCATT
                      ____________________________________________________________
consensus                   CTCCGGGAACGTGCGGCGAAATCGAAAGAGTTCGACGCGGAAGTCCAAACCATT
 
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rJMSF015A20+          GAGCTCAATACGGCATGTTAACGTTGTTAAACTGTATTGCAGCATTACCAGCGAGGATTC
rJMSF025H12+          GAGCTCAATACGGCATGTTAACGTTGTTAAACTGTATTGCAGCATTACCAGCGAGGATTC
                      ____________________________________________________________
consensus             GAGCTCAATACGGCATGTTAACGTTGTTAAACTGTATTGCAGCATTACCAGCGAGGATTC
 
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rJMSF015A20+          AAGTCTGTTGGTCTATGAATACTTGCCCAATGGAAGCTTATGGGATCGACTGCACACCTG
rJMSF025H12+          AAGTCTGTTGGTCTATGAATACTTGCCCAATGGAAGCTTATGGGATCGACTGCACACCTG
                      ____________________________________________________________
consensus             AAGTCTGTTGGTCTATGAATACTTGCCCAATGGAAGCTTATGGGATCGACTGCACACCTG
 
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rJMSF015A20+          CAAGAAAATGGCGTTGGATTGGGAGACGAGGTATGATATCGCCGTCGGAGCCGCCAAGGG
rJMSF025H12+          CAAGAAAATGGCGTTGGATTGGGAGACGAGGTATGATATCGCCGTCGGAGCCGCCAAGGG
                      ____________________________________________________________
consensus             CAAGAAAATGGCGTTGGATTGGGAGACGAGGTATGATATCGCCGTCGGAGCCGCCAAGGG
 
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rJMSF015A20+          GTTGGAGTATCTCCACCACGGCTGTGACCGCCCGGTGATTCACCGGGATATCAAGTCGAG
rJMSF025H12+          GTTGGAGTATCTCCACCACGGCTGTGACCGCCCGGTGATTCACCGGGATATCAAGTCGAG
                      ____________________________________________________________
consensus             GTTGGAGTATCTCCACCACGGCTGTGACCGCCCGGTGATTCACCGGGATATCAAGTCGAG
 
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rJMSF015A20+          TAACATTTTATTAGACGAGTTCTTGAAATCAAGAATCGCAGATTTTGGCCTTGCAAAGCT
rJMSF025H12+          TAACATTTTATTAGACGAGTTCTTGAAATCAAGAATCGCAGATTTTGGCCTTGCAAAGCT
                      ____________________________________________________________
consensus             TAACATTTTATTAGACGAGTTCTTGAAATCAAGAATCGCAGATTTTGGCCTTGCAAAGCT
 
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rJMSF042F16+                                      ACTCATGTCATTGCTGGAACTCATGGATACAT
rJMSF015A20+          AGTTCAGCCTGATGCCATTCACGATTCAACTCATGTCATTGCTGGAACTCATGGATACAT
rJMSF025H12+          AGTTCAGCCTGATGCCATTCACGATTCAACTCATGTCATTGCTGGAACTCATGGATACAT
                      ____________________________________________________________
consensus             AGTTCAGCCTGATGCCATTCACGATTCAACTCATGTCATTGCTGGAACTCATGGATACAT
 
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rJMSF042F16+          TGCTCCAGAGTATGGGTACACGAACAAAGTAAATGAGAAGAGCGACGTGTACAGTTTCGG
rJMSF015A20+          TGCTCCAGAGTATGGGTACACGAACAAAGTAAATGAGAAGAGCGGCGTGTACAGTTTCGG
rJMSF025H12+          TGCTCCAGAGTATGGGTACACGAACAAAGTAAATGAGAAGAGCGACGTGTACAGTTTCGG
                      ____________________________________________________________
consensus             TGCTCCAGAGTATGGGTACACGAACAAAGTAAATGAGAAGAGCGACGTGTACAGTTTCGG
 
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rJMSF042F16+          AGTGGTGCTGATGGAACTCGTGTTGGGGAAAAGGCCAACGGAGGCGGAATATGGAGAAAA
rJMSF015A20+          AGTGGTGCTGATGGAACTCGTGTTGGGGAAAAGGCCAACGGAGGCGGAATATGGAGAAAA
rJMSF025H12+          AGTGGTGCTGATGGAACTCGTGTTGGGGAAAAGGCCAACGGAGGCGGAATATGGAGAAAA
                      ____________________________________________________________
consensus             AGTGGTGCTGATGGAACTCGTGTTGGGGAAAAGGCCAACGGAGGCGGAATATGGAGAAAA
 
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rJMSF042F16+          CAACGACATTGTGAGCTGGGTTAGCA                                  
rJMSF015A20+          CAACGACATTGTGAGCTGGGTTAGCAGCAAATTGTGTAGCAAAGAGAGTGTGTTAAACCT
rJMSF025H12+          CAACGACATTGTGAGCTGGGTTAGCAGCAAATTGTGTAGCAAAGAGAGTGTGTTAAACCT
                      ____________________________________________________________
consensus             CAACGACATTGTGAGCTGGGTTAGCAGCAAATTGTGTAGCAAAGAGAGTGTGTTAAACCT
 
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rJMSF015A20+          AGTTGATTCAGAAATCCGACAATCTTACAAAGAAGATGCCATTAAGGTGTTAAGGATTGC
rJMSF025H12+          AGTTGATTCAGAAATCCGACAATCTTACAAAGAAGATGCCATTAAGGTGTTAAGGATTGC
                      ____________________________________________________________
consensus             AGTTGATTCAGAAATCCGACAATCTTACAAAGAAGATGCCATTAAGGTGTTAAGGATTGC
 
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rJMSF015A20+          AGTCATGTGCACGGCCAGGCTCCCAAGTTTAAGGCCTTCAATGAGGATCTGTGGTCAAAA
rJMSF025H12+          AGTCATGTGCACGGCCAGGCTCCCAAGTTTAAGGCCTTCAATGAGGA-CTGTGGTCAAAA
                      ____________________________________________________________
consensus             AGTCATGTGCACGGCCAGGCTCCCAAGTTTAAGGCCTTCAATGAGGATCTGTGGTCAAAA
 
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rJMSF015A20+          TGCTGGAGGATGCGCAGCCGTGCAATTTGTTGGGAGTAGTTGTTTGTAAA          
rJMSF025H12+          TGCTGGAGGATGCGCAGCCGTGCAATTTGTTGGGAGTAGTTGTTTGTAAACCAAGAGTGT
                      ____________________________________________________________
consensus             TGCTGGAGGATGCGCAGCCGTGCAATTTGTTGGGAGTAGTTGTTTGTAAACCAAGAGTGT