Contig 002859:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020A18Sequence690006317 (8)ref|XP_009611020.1|3e-30PREDICTED: oxysterol-binding protein-related protein 2A-like [Nicotiana tomento591002859 (2)ref|XP_010325477.1|3e-43PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Solanum lyc
JMSF024F15Sequence669017835ref|XP_010325476.1|9e-17PREDICTED: oxysterol-binding protein-related protein 2A isoform X2 [Solanum lyc747002859 (2)ref|XP_009768056.1|9e-49PREDICTED: oxysterol-binding protein-related protein 2A isoform X2 [Nicotiana s

Alignment

This contig is upended


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rJMSF024F15+                                           CAGGACAAGCTCCCACCTACAGATTCA
                      ____________________________________________________________
consensus                                              CAGGACAAGCTCCCACCTACAGATTCA
 
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rJMSF020A18+             CTTAGACCAGATCAGCGATATCTGGAGAATGGGGAATATGACAAAGCAAACCAGGAG
rJMSF024F15+          AGACTTAGACCAGATCAGCGATATCTGGAGAATGGGGAATATGACAAAGCAAACCAGGAG
                      ____________________________________________________________
consensus             AGACTTAGACCAGATCAGCGATATCTGGAGAATGGGGAATATGACAAAGCAAACCAGGAG
 
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rJMSF020A18+          AAACAACGGTTAGAGACACGGCAGAGATTGTCAAAGAAATTACAAGAGACTGGTTGGAAG
rJMSF024F15+          AAACAACGGTTAGAGACACGGCAGAGATTGTCAAAGAAATTACAAGAGACTGGTTGGAAG
                      ____________________________________________________________
consensus             AAACAACGGTTAGAGACACGGCAGAGATTGTCAAAGAAATTACAAGAGACTGGTTGGAAG
 
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rJMSF020A18+          CCTAGATGGTTTCAAAGAGAAGGCGAAGATGGAACATTCCGTTATGTTGGTGGTTACTGG
rJMSF024F15+          CCTAGATGGTTTCAAAGAGAAGGCGAAGATGGAACATTCCGTTATGTTGGTGGTTACTGG
                      ____________________________________________________________
consensus             CCTAGATGGTTTCAAAGAGAAGGCGAAGATGGAACATTCCGTTATGTTGGTGGTTACTGG
 
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rJMSF020A18+          GAAGCTAGGGAGAACGGAAAATGGGATGGTTGCCCAAATATCTTTGGTCAAATTGATGAA
rJMSF024F15+          GAAGCTAGGGAGAACGGAAAATGGGATGGTTGCCCAAATATCTTTGGTCAAATTGATGAA
                      ____________________________________________________________
consensus             GAAGCTAGGGAGAACGGAAAATGGGATGGTTGCCCAAATATCTTTGGTCAAATTGATGAA
 
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rJMSF020A18+          AATCTGTTAGGTTCTTTTCAAGGATCCTGACTTTGCCTAGAGAACCAATGATCCGGTGAT
rJMSF024F15+          AATCTGTTAGGTTCTTTTCAAGGATCCTGACTTTGCCTAGAGAACCAATGATCCGGTGAT
                      ____________________________________________________________
consensus             AATCTGTTAGGTTCTTTTCAAGGATCCTGACTTTGCCTAGAGAACCAATGATCCGGTGAT
 
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rJMSF020A18+          TAAACTGAGGACAAAGAACGCCCCAAGAGGTGATCGGATAGTGTGGAGTAATTATCAATC
rJMSF024F15+          TAAACTGAGGACAAAGAACGCCCCAAGAGGTGATCGGATAGTGTGGAGTAATTATCAATC
                      ____________________________________________________________
consensus             TAAACTGAGGACAAAGAACGCCCCAAGAGGTGATCGGATAGTGTGGAGTAATTATCAATC
 
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rJMSF020A18+          TTTGTGAGCGGCAAGAGATTGTTGTCTGAGCCGATGCAAGCTGATCATGAAGGGCATCGG
rJMSF024F15+          TTTGTGAGCGGCAAGAGATTGTTGTTTGAGCCGATGCAAGCTGATCATGAAGGGCATCGG
                      ____________________________________________________________
consensus             TTTGTGAGCGGCAAGAGATTGTTGTTTGAGCCGATGCAAGCTGATCATGAAGGGCATCGG
 
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rJMSF020A18+          AAACAATCTCTCTCCGGTGAGGAATGGTGTTGGTTGCAAGAACAGAGTTGTCTTTAATAC
rJMSF024F15+          AAACAATCTCTCTCCGGTGAGGAATGGTGTTGGTTGCAAGAACAGAGTTGTCTTTAATAC
                      ____________________________________________________________
consensus             AAACAATCTCTCTCCGGTGAGGAATGGTGTTGGTTGCAAGAACAGAGTTGTCTTTAATAC
 
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rJMSF020A18+          ATTCCATATTTGCTCTAAGGCCTAGTTTTGGTAATCTCTGTTTATTCATTATAGTTTTTC
rJMSF024F15+          ATTCCATATTTGCTCTAAGGCCTAGTTTTGGTAATCTCTGTTTATTCATTATAGTTTTTC
                      ____________________________________________________________
consensus             ATTCCATATTTGCTCTAAGGCCTAGTTTTGGTAATCTCTGTTTATTCATTATAGTTTTTC
 
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rJMSF020A18+          ATCTTTGCCATGCCCCCTTCCCTTTGGCAAAGCATTAATTTATTTAGGTAATTA      
rJMSF024F15+          ATCTTTGCCATGCCCCCTTCCCTTTGGCAAAGCATTAATTTATTTAGGTAATTATTTGTA
                      ____________________________________________________________
consensus             ATCTTTGCCATGCCCCCTTCCCTTTGGCAAAGCATTAATTTATTTAGGTAATTATTTGTA
 
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rJMSF024F15+          TTTTCTTTTTAAAAATAAATGCAATTGATGTATTTAACCAACAAACCAAACATGGCTGTT
                      ____________________________________________________________
consensus             TTTTCTTTTTAAAAATAAATGCAATTGATGTATTTAACCAACAAACCAAACATGGCTGTT
 
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rJMSF024F15+          GTTGTAAAGGTCTGAAAAGATTAGAGCACAACCCAACCCCCCTTGAAATCTATTCAACAT
                      ____________________________________________________________
consensus             GTTGTAAAGGTCTGAAAAGATTAGAGCACAACCCAACCCCCCTTGAAATCTATTCAACAT