| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016L14 | Sequence | 580 | 002852 (12) | ref|XP_003518726.1| | 2e-57 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos | 540 | 002852 (12) | ref|XP_003518726.1| | 1e-57 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos |
| JMFF020J05 | Sequence | 525 | 002852 (12) | ref|XP_003518726.1| | 1e-57 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos | 547 | 002852 (12) | ref|XP_003518726.1| | 1e-57 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos |
| JMSF007B10 | Sequence | 238 | 002852 (12) | ref|XP_004138165.1| | 5e-35 | PREDICTED: 60S ribosomal protein L34-like [Cucumis sativus] ref|XP_004147322.1| | 542 | 002852 (12) | ref|XP_003518726.1| | 8e-58 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos |
| JMSF022M17 | Sequence | 612 | 002852 (12) | ref|XP_003518726.1| | 2e-57 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos | 570 | 002852 (12) | ref|XP_003518726.1| | 1e-57 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos |
| JMSF023M17 | Sequence | 621 | 018917 | ref|XP_004245542.1| | 1e-09 | PREDICTED: ethylene-responsive transcription factor CRF1 [Solanum lycopersicum] | 306 | 002852 (12) | ref|XP_010693235.1| | 6e-12 | PREDICTED: 60S ribosomal protein L34 [Beta vulgaris subsp. vulgaris] |
| JMSF030M07 | Sequence | 608 | 002852 (12) | ref|XP_003518726.1| | 3e-57 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos | 563 | 002852 (12) | ref|XP_003518726.1| | 2e-57 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos |
| JMSF031M07 | Sequence | 556 | 002852 (12) | ref|XP_003518726.1| | 2e-57 | PREDICTED: 60S ribosomal protein L34-like [Glycine max] gb|KHN01221.1| 60S ribos | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF030M07+ GGGAGAAGAAACAAAGAAACAAACCTA
rJMSF031M07+ GGGAGAAGAAACAAAGAAACAAACCTA
rJMFF020J05+ AAGAAACAAAGAAACAAACCTA
rJMSF007B10+ GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
JMFF020J05- AAGAAACAAAGAAACAAACCTA
JMSF022M17- GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
JMSF030M07- GGGAGAAGAAACAAAGAAACAAACCTA
JMFF016L14- AAAGAAACAAACCTA
JMSF007B10- GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
rJMSF022M17+ GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
____________________________________________________________
consensus GCTTTGGGAGAAGAAACAAAGAAACAAACCTA
. : . : . : . : . : . :
rJMSF030M07+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMSF031M07+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMFF020J05+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMSF007B10+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMFF020J05- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMFF016L14+ CCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMSF022M17- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMSF030M07- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMFF016L14- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
JMSF007B10- ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
rJMSF022M17+ ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
____________________________________________________________
consensus ACCCAGAGCTTCAGAGCATAAAAATGGTGCAGCGGCTCACCTATCGCAAGAGGCATAGCT
. : . : . : . : . : . :
rJMSF030M07+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMSF031M07+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMFF020J05+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMSF007B10+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMFF020J05- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMFF016L14+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMSF022M17- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMSF030M07- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMFF016L14- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
JMSF007B10- ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
rJMSF022M17+ ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
____________________________________________________________
consensus ATGCCACCAAATCCAACCAACACCGGGTCGTCAAAACCCCTGGTGGGAAGCTGGTGTATC
. : . : . : . : . : . :
rJMSF030M07+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
rJMSF031M07+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
rJMFF020J05+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
rJMSF007B10+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMFF020J05- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
rJMFF016L14+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMSF022M17- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMSF030M07- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMFF016L14- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
JMSF007B10- AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCNAG
rJMSF022M17+ AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
____________________________________________________________
consensus AGACCACGAAGAAGAGGGCTAGTGGCCCCAAGTGCCCTGTAACTGGGAAGAGAATCCAAG
. : . : . : . : . : . :
rJMSF030M07+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
rJMSF031M07+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
rJMFF020J05+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
rJMSF007B10+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMFF020J05- GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
rJMSF023M17+ TGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGN
rJMFF016L14+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMSF022M17- GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMSF030M07- GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMFF016L14- GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
JMSF007B10- GGATTCCTCACTTGAGACCCGCTGAA
rJMSF022M17+ GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
____________________________________________________________
consensus GGATTCCTCACTTGAGACCCGCTGAATACAAGAGGTCTAGGTTGCCTAGATGCAGGAGGA
. : . : . : . : . : . :
rJMSF030M07+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMSF031M07+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMFF020J05+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMSF007B10+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
JMFF020J05- CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMSF023M17+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCNGTCAGGGAAAGGATCATCA
rJMFF016L14+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
JMSF022M17- CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
JMSF030M07- CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
JMFF016L14- CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
rJMSF022M17+ CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
____________________________________________________________
consensus CTGTGAACCGCCCCTATGGTGGAGTGTTGTCCGGCAGTGCTGTCAGGGAAAGGATCATCA
. : . : . : . : . : . :
rJMSF030M07+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMSF031M07+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMFF020J05+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMSF007B10+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
JMFF020J05- GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMSF023M17+ GAGCCTTTTTGGTGGAAGAGCNAAAGATTGTGAAGAAAGTTTTGAAGATTCNGAAGGCCA
rJMFF016L14+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
JMSF022M17- GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
JMSF030M07- GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
JMFF016L14- GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
rJMSF022M17+ GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
____________________________________________________________
consensus GAGCCTTTTTGGTGGAAGAGCAAAAGATTGTGAAGAAAGTTTTGAAGATTCAGAAGGCCA
. : . : . : . : . : . :
rJMSF030M07+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
rJMSF031M07+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
rJMFF020J05+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
rJMSF007B10+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
JMFF020J05- AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
rJMSF023M17+ NGGAAAAGCANGCTTCTAAAGCTCTAATCTTGTGTGNTTTGTGTTGTGCNAGNCATGACT
rJMFF016L14+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
JMSF022M17- AGGAAAAGCAAGCT
JMSF030M07- AGGAAAAGCAAGCT
JMFF016L14- AGGAAAAGCAAGCT
rJMSF022M17+ AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
____________________________________________________________
consensus AGGAAAAGCAAGCTTCTAAAGCCTAAG--TTGTGTGTTTTGTGTTGTGCAAGACATGACT
. : . : . : . : . : . :
rJMSF030M07+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMSF031M07+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMFF020J05+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMSF007B10+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
JMFF020J05- TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMSF023M17+ TGCTGGTTTTAGAGACCAACCTATTTTTGGATACATNTTANCNTTGAGGATTCTTGAATG
rJMFF016L14+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
rJMSF022M17+ TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
____________________________________________________________
consensus TGCTGGTTTTAGAGACAAACCTATTTTTGGATACATCTTAGCATTGAGGATTCTTGAATG
. : . : . : . : . : . :
rJMSF030M07+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTATGTTTTGT
rJMSF031M07+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTATGTT
rJMFF020J05+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTA
rJMSF007B10+ TGTATTTTCATGTTTTTTGGGATACTCAGATT
JMFF020J05- TGTATTTTCATGTTTTTTGGGATAC
rJMSF023M17+ TGTATTTCCATGTTTTTTGGGATA
rJMFF016L14+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTA
rJMSF022M17+ TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTATGTTTTGTGAATGT
____________________________________________________________
consensus TGTATTTTCATGTTTTTTGGGATACTCAGATTTGTATTTTTCTTTATGTTTTGTGAATGT