Contig 002848:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN010E04Sequence618002848 (4)emb|CDP01454.1|9e-85unnamed protein product [Coffea canephora]
JMFN012C09Sequence624002848 (4)emb|CDP01454.1|3e-84unnamed protein product [Coffea canephora]
JMSF021O23Sequence669002848 (4)emb|CDP01454.1|2e-84unnamed protein product [Coffea canephora]717002848 (4)emb|CDP01454.1|3e-84unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF021O23+                                                              CTATGAATG
rJMSF021O23-             TTCATTATTAGCAAAGCAACTAATGAAAGCAGTTTCAGGGCACCATTTCTATGAATG
                      ____________________________________________________________
consensus                TTCATTATTAGCAAAGCAACTAATGAAAGCAGTTTCAGGGCACCATTTCTATGAATG
 
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JMSF021O23+           CAATAGAATTCTTTTTCATAAAGAATTTAAATCCTACCTACCAGCAAACGACTTCATGCT
JMFN012C09+                  ATTCTTTTTCATAAAGAATTTAAATCCTACCTACCAGCAAACGACTTCATGCT
JMFN010E04+                               AAGAATTTAAATCCTACCTACCAGCAAACGACTTCATGCT
rJMSF021O23-          CAATAGAATTCTTTTTCATAAAGAATTTAAATCCTACCTACCAGCAAACGACTTCATGCT
                      ____________________________________________________________
consensus             CAATAGAATTCTTTTTCATAAAGAATTTAAATCCTACCTACCAGCAAACGACTTCATGCT
 
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JMSF021O23+           GCTCCACGGAAACTTGGCGGTTGCAGCATCACCACCACTACCAGCATTCCTGGTTCGATT
JMFN012C09+           GCTCCACGGAAACTTGGCGGTTGCAGCATCACCACCACTACCAGCATTCCTGGTTCGATT
JMFN010E04+           GCTCCACGGAAACTTGGCGGTTGCAGCATCACCACCACTACCAGCATTCCTGGTTCGATT
rJMSF021O23-          GCTCCACGGAAACTTGGCGGTTGCAGCATCACCACCACTACCAGCATTCCTGGTTCGATT
                      ____________________________________________________________
consensus             GCTCCACGGAAACTTGGCGGTTGCAGCATCACCACCACTACCAGCATTCCTGGTTCGATT
 
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JMSF021O23+           TACACCATGGCCACGACCGTATCTCCCCCCCTGGGGCCTCGATTTCCCGTCTTTCCTATC
JMFN012C09+           TACACCATGGCCACGACCGTATCTCCCCCCCTGGGGCCTCGATTTCCCGTCTTTCCTATC
JMFN010E04+           TACACCATGGCCACGACCGTATCTCCCCCCCTGGGGCCTCGATTTCCCGTCTTTCCTATC
rJMSF021O23-          TACACCATGGCCACGACCGTATCTCCCCCCCTGGGGCCTCGATTTCCCGTCTTTCCTATC
                      ____________________________________________________________
consensus             TACACCATGGCCACGACCGTATCTCCCCCCCTGGGGCCTCGATTTCCCGTCTTTCCTATC
 
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JMSF021O23+           ATCAAGCCAATGTGCCTTCTTTGGTTCACCATCCTCAACTATGCTGGATTTCGATTGCTT
JMFN012C09+           ATCAAGCCAATGTGCCTTCTTTGGTTCACCATCCTCAACTATGCTGGATTTCGATTGCTT
JMFN010E04+           ATCAAGCCAATGTGCCTTCTTTGGTTCACCATCCTCAACTATGCTGGATTTCGATTGCTT
rJMSF021O23-          ATCAAGCCAATGTGCCTTCTTTGGTTCACCATCCTCAACTATGCTGGATTTCGATTGCTT
                      ____________________________________________________________
consensus             ATCAAGCCAATGTGCCTTCTTTGGTTCACCATCCTCAACTATGCTGGATTTCGATTGCTT
 
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JMSF021O23+           GCTTGTTTCCTGCTTCATCTGTTCGATTAATCTGATCGGGTAAAACTCCGGTGAGATGGA
JMFN012C09+           GCTTGTTTCCTGCTTCATCTGTTCGATTAATCTGATCGGGTAAAACTCCGGTGAGATGGA
JMFN010E04+           GCTTGTTTCCTGCTTCATCTGTTCGATTAATCTGATCGGGTAAAACTCCGGTGAGATGGA
rJMSF021O23-          GCTTGTTTCCTGCTTCATCTGTTCGATTAATCTGATCGGGTAAAACTCCGGTGAGATGGA
                      ____________________________________________________________
consensus             GCTTGTTTCCTGCTTCATCTGTTCGATTAATCTGATCGGGTAAAACTCCGGTGAGATGGA
 
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JMSF021O23+           CAAAGGGTTCTTCAGGGTAACATACGCCTTTTTGTAGTCAGGCTTGGCGATCAACAACCC
JMFN012C09+           CAAAGGATTCTTCAGGGTAACATACGCCTTTTTGTAGTCAGGCTTGGCGATCAACAACCC
JMFN010E04+           CAAAGGGTTCTTCAGGGTAACATACGCCTTTTTGTAGTCAGGCTTGGCGATCAACAACCC
rJMSF021O23-          CAAAGGGTTCTTCAGGGTAACATACGCCTTTTTGTAGTCAGGCTTGGCGATCAACAACCC
                      ____________________________________________________________
consensus             CAAAGGGTTCTTCAGGGTAACATACGCCTTTTTGTAGTCAGGCTTGGCGATCAACAACCC
 
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JMSF021O23+           GCCTCGCTTCTTCTTCTTCCCATCCATGTTCAGGGTTTGGACCTTCTCCACTTCGAATCC
JMFN012C09+           GCCTCGCTTCTTCTTCTTCCCATCCATGTTCAGGGTTTGGACCTTCTCCACTTCGAATCC
JMFN010E04+           GCCTCGCTTCTTCTTCTTCCCATCCATGTTCAGGGTTTGGACCTTCTCCACTTCGAATCC
rJMSF021O23-          GCCTCGCTTCTTCTTCTTCCCATCCATGTTCAGGGTTTGGACCTTCTCCACTTCGAATCC
                      ____________________________________________________________
consensus             GCCTCGCTTCTTCTTCTTCCCATCCATGTTCAGGGTTTGGACCTTCTCCACTTCGAATCC
 
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JMSF021O23+           GTAGAGTGACTCCAAAACCCTCTTTATCTCAATCTTGGAAGCGGAAGGGATGGTTTTGAG
JMFN012C09+           GTAGAGTGACTCCAAAACCCTCTTTATCTCAATCTTGGAAGCGGAAGGGATGGTTTTGAG
JMFN010E04+           GTAGAGTGACTCCAAAACCCTCTTTATCTCAATCTTGGAAGCGGAAGGGATGGTTTTGAG
rJMSF021O23-          GTAGAGTGACTCCAAAACCCTCTTTATCTCAATCTTGGAAGCGGAAGGGATGGTTTTGAG
                      ____________________________________________________________
consensus             GTAGAGTGACTCCAAAACCCTCTTTATCTCAATCTTGGAAGCGGAAGGGATGGTTTTGAG
 
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JMSF021O23+           AGCAATCTCGGTAATATTTTCGAACGAGGACGGCATAAGGAGTTTGATGGGTAAGTTAGC
JMFN012C09+           AGCAATCTCGGTAATATTTTCGAACGAGGACGGCATAAGGAGTTTGATGGGTAAGTTAGC
JMFN010E04+           AGCAATCTCGGTAATATTTTCGAACGAGGACGGCATAAGGAGTTTGATGGGTAAGTTAGC
rJMSF021O23-          AGCAATCTCGGTAATATTTTCGAACGAGGACGGCATAAGGAGTTTGATGGGTAAGTTAGC
                      ____________________________________________________________
consensus             AGCAATCTCGGTAATATTTTCGAACGAGGACGGCATAAGGAGTTTGATGGGTAAGTTAGC
 
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JMSF021O23+           AAAGTGTACTACTCTTCTTCCCAATCTGCTCCCCATTGCAAACTATGGTGAGTTCCCTAT
JMFN012C09+           AAAGTGTACTACTCTTCTTCCCAATCTGCTCCACATTGCAAACTATGGTGAGTTCCCTAT
JMFN010E04+           AAAGTGTACTACTCTTCTTCCCAATCTGCTCCCCATTGCAAACTATGGTGAGTTCCCTAT
rJMSF021O23-          AAAGTGTACTACTCTTCTTCCCAATCTGCTCCCCATTGCAAACTATGGTGAGTTCCCTAT
                      ____________________________________________________________
consensus             AAAGTGTACTACTCTTCTTCCCAATCTGCTCCCCATTGCAAACTATGGTGAGTTCCCTAT
 
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JMSF021O23+           CAATGGCCGCTGGCGCTGGGGTTTGCGTTTACGAAATGGTACAGTACTGGTAAACTGATC
JMFN012C09+           CAATGGCCGCTGGCGCTGGGGTTTGCGTTTA                             
JMFN010E04+           CAATGGCCGCTGGCGCTGGGGTTTGCGTTTA                             
rJMSF021O23-          CAATGGCCGCTGGCGCTGGGGTTTGCGTTTACGAAATGGTACAGTACTGGTAAACTGATC
                      ____________________________________________________________
consensus             CAATGGCCGCTGGCGCTGGGGTTTGCGTTTACGAAATGGTACAGTACTGGTAAACTGATC