| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017P04 | Sequence | 553 | 010204 (5) | ref|XP_006352343.1| | 1e-56 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | 342 | 002847 (3) | |||
| JMSF011B03 | Sequence | 281 | 010204 (5) | ref|XP_003594254.1| | 3e-29 | RNA-binding protein, putative [Medicago truncatula] | 754 | 002847 (3) | ref|XP_009625288.1| | 6e-11 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana tomentosif |
| JMSF021N02 | Sequence | 696 | 010204 (5) | ref|XP_009775500.1| | 1e-110 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana sylvestris | 760 | 002847 (3) | emb|CDP04502.1| | 2e-11 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF011B03+ CTGGGAATGACCATATCGGCTACANCAATGCTGGTGTTGGA
rJMSF021N02+ CTGGGAATGACCATATCGGCTACAACAATGCTGGTGTTGGA
____________________________________________________________
consensus CTGGGAATGACCATATCGGCTACAACAATGCTGGTGTTGGA
. : . : . : . : . : . :
rJMSF011B03+ GGGTATGGGCCCTATAATGGTAATGGTAACACTGCTGGTGAAACATCCACTCTTACTGCA
rJMSF021N02+ GGGTATGGACCCTATAATGGTAATGGTAACACTGCTGGTGAAACATCCACTCTTACTGCA
____________________________________________________________
consensus GGGTATGGGCCCTATAATGGTAATGGTAACACTGCTGGTGAAACATCCACTCTTACTGCA
. : . : . : . : . : . :
rJMSF011B03+ ACAGGAGATGTTCGTTCTCC-AAATTTTGGAAGCTTTTACGGGACTGGAAATGGTTCGTT
rJMSF021N02+ ACAGGAGATGTTCGTTCTCCAAAATTTTGGAAGCTTGTACGGGACTGGAAATGGTTCGTT
____________________________________________________________
consensus ACAGGAGATGTTCGTTCTCCAAAATTTTGGAAGCTTTTACGGGACTGGAAATGGTTCGTT
. : . : . : . : . : . :
rJMSF011B03+ CTTTGAGGACCAAACCTGGCATTCACTATCTCCCGAGCTGGAGGGTTCTGGTTCTTTCCG
rJMSF021N02+ CTTTGAGGACCAAACCTGGCATTCACTATCTCCCGAGCTGGAGGGTTCTGGTTCTTTCCG
____________________________________________________________
consensus CTTTGAGGACCAAACCTGGCATTCACTATCTCCCGAGCTGGAGGGTTCTGGTTCTTTCCG
. : . : . : . : . : . :
rJMFF017P04+ ATACNTAAANACTCAATTGATTANGTTGG
rJMSF011B03+ CTATGGGCTTGGAAATATGGCTTCGGATGTTATACCTAAAAACTCAATTGATTATGTTGG
rJMSF021N02+ CTATGGGCTTGGAAATATGGCTTCGGATGTTATACCTAAAAACTCAATTGATTATGTTGG
____________________________________________________________
consensus CTATGGGCTTGGAAATATGGCTTCGGATGTTATACCTAAAAACTCAATTGATTATGTTGG
. : . : . : . : . : . :
rJMFF017P04+ TGNTNATAGTATTACAAATAGATCANATNCAGGAATCNCTNCCTAGCAATCCTGTGTGGG
rJMSF011B03+ TGCTTATAGTATTACAAATAGATCAAATACAGGAATCGCTGCCTAGCAATCCTGTGTGGG
rJMSF021N02+ TGCTTATAGTATTACAAATAGATCAAATACAGGAATCGCTGCCTAGCAATCCTGTGTGGG
____________________________________________________________
consensus TGCTTATAGTATTACAAATAGATCAAATACAGGAATCGCTGCCTAGCAATCCTGTGTGGG
. : . : . : . : . : . :
rJMFF017P04+ ATTCCAATGTTGATTNCAAGTNGAAATTATGNNTTCATGCAAAATNAAAGATTTTGATTA
rJMSF011B03+ ATTCCAATGTTGATTACAAGTCGAAATTATGTTTTCATGCAAAATTAAAGATTTTGATTA
rJMSF021N02+ ATTCCAATGTTGATTACAAGTCGAAATTATGTTTTCATGCAAAATTAAAGATTTTGATTA
____________________________________________________________
consensus ATTCCAATGTTGATTACAAGTCGAAATTATGTTTTCATGCAAAATTAAAGATTTTGATTA
. : . : . : . : . : . :
rJMFF017P04+ TTTCAATCAGNNGNGGAGGAAGANTTNGGGATAGAGGTACATAAANNTAGAGNTAATTCA
rJMSF011B03+ TTTCAATCAGCTGCGGAGGAAGACTTCGGGATAGAGGTACATAAACTTAGAGCTAATTCA
rJMSF021N02+ TTTCAATCAGCTGCGGAGGAAGACTTCGGGATAGAGGTACATAAACTTAGAGCTAATTCA
____________________________________________________________
consensus TTTCAATCAGCTGCGGAGGAAGACTTCGGGATAGAGGTACATAAACTTAGAGCTAATTCA
. : . : . : . : . : . :
rJMFF017P04+ NGAGCCTCGNTTAGAANTTATNTCAANGAACATNTNCGATANGAATATGCGGTTTTNNTG
rJMSF011B03+ AGAGCCTCGCTTAGAACTTATCTCAAAGAACATTTACGATACGAATATGCGGTTTTACTG
rJMSF021N02+ AGAGCCTCCCTTAGAACTTATCTCAAAGAACATTTACGATACGAATATGCGGTTTTACTG
____________________________________________________________
consensus AGAGCCTCGCTTAGAACTTATCTCAAAGAACATTTACGATACGAATATGCGGTTTTACTG
. : . : . : . : . : . :
rJMFF017P04+ GGAGATAGGATCAAGTTTTTTGTNTTGGTNNTGCCCTGATTATAAGGTNGAGAANNGAGA
rJMSF011B03+ GGAGATAGGATCAAGTTTTTTGTTTTGGTTTTGCCCTGATTATAAGGTTGAGAATTGAGA
rJMSF021N02+ GGAGATAGGATCAAGTTTTTTGTTTTGGTTTTGCCCTGATTATAAGGTTGAGAATTGAGA
____________________________________________________________
consensus GGAGATAGGATCAAGTTTTTTGTTTTGGTTTTGCCCTGATTATAAGGTTGAGAATTGAGA
. : . : . : . : . : . :
rJMFF017P04+ TGTAAAATTGG
rJMSF011B03+ TGTAAAATTGGATAGCAGAACACACTTAAGATTATTGTACCATGCACATCACAGCAAGTC
rJMSF021N02+ TGTAAAATTGGATAGCAGAACACACTTAAGATTATTGTACCATGCACATCACAGCAAGTC
____________________________________________________________
consensus TGTAAAATTGGATAGCAGAACACACTTAAGATTATTGTACCATGCACATCACAGCAAGTC
. : . : . : . : . : . :
rJMSF011B03+ AAGAAAGTAGATTTAGTCATTTTTATCTATATTATATTGTATTATTTCTTTCATGTGTTT
rJMSF021N02+ AAGAAAGTAGATTTAGTCATTTTTATCTATATTATATTGTATTATTTCTTTCATGTGTTT
____________________________________________________________
consensus AAGAAAGTAGATTTAGTCATTTTTATCTATATTATATTGTATTATTTCTTTCATGTGTTT
. : . : . : . : . : . :
rJMSF011B03+ GTAATGTTTTTTGTTCTTTTCGGGAATGTNTGATTTGTCATTATAATTGTATAT
rJMSF021N02+ GTAATGTTTTTTGTTCTTTTTGGGAATGT-TGATTTGTCANTATAATTGTATATTGTAAG
____________________________________________________________
consensus GTAATGTTTTTTGTTCTTTTTGGGAATGTNTGATTTGTCATTATAATTGTATATTGTAAG