| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF006C19 | Sequence | 401 | 000603 (5) | ref|XP_006367734.1| | 2e-11 | PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum] | 374 | 002839 (3) | ref|XP_009588814.1| | 6e-42 | PREDICTED: transcription factor TGA1 [Nicotiana tomentosiformis] |
| JMSF008E17 | Sequence | 452 | 010670 (3) | ref|XP_006360289.1| | 2e-19 | PREDICTED: transcription factor TGA7-like isoform X1 [Solanum tuberosum] ref|XP | 676 | 002839 (3) | ref|XP_009776929.1| | 4e-84 | PREDICTED: transcription factor TGA1-like [Nicotiana sylvestris] ref|XP_00977693 |
| JMSF020E03 | Sequence | 672 | 010670 (3) | ref|XP_010320138.1| | 2e-41 | PREDICTED: transcription factor TGA4-like isoform X1 [Solanum lycopersicum] | 683 | 002839 (3) | ref|XP_009776929.1| | 4e-84 | PREDICTED: transcription factor TGA1-like [Nicotiana sylvestris] ref|XP_00977693 |
This contig is upended
. : . : . : . : . : . :
rJMSF008E17+ TCTCTTCAGGATGAAAGCTGATG
rJMSF020E03+ TCTCTTCAGGATGAAAGCTGATG
____________________________________________________________
consensus TCTCTTCAGGATGAAAGCTGATG
. : . : . : . : . : . :
rJMSF008E17+ TTGCAAAAGCTGATATCTTCTACTTGATATCAGGAATGTGGGTGTCACCAATCGAGCGGT
rJMSF020E03+ TTGCAAAAGCTGATATCTTCTACTTGATATCAGGAATGTGGGTGTCACCAATCGAGCGGT
____________________________________________________________
consensus TTGCAAAAGCTGATATCTTCTACTTGATATCAGGAATGTGGGTGTCACCAATCGAGCGGT
. : . : . : . : . : . :
rJMSF008E17+ TTTTCCTATGGCTGGGAGGATTCCGGCCATCAGAACTTATAAGCGTGATAACACCACAAA
rJMSF020E03+ TTTTCCTATGGCTGGGAGGATTCCGGCCATCAGAACTTATAAGCGTGATAACACCACAAA
____________________________________________________________
consensus TTTTCCTATGGCTGGGAGGATTCCGGCCATCAGAACTTATAAGCGTGATAACACCACAAA
. : . : . : . : . : . :
rJMSF008E17+ TCGAGCCCCTGACTGATCAGCAGCTCTTGAATGTGTATAACCTGCAACTGTGTTGCCAGC
rJMSF006C19+ ACTGATCAGCAGCTCTNGAATGTGTATAACCTGCAACTGNGTTGCCAGC
rJMSF020E03+ TCGAGCCCCTGACTGATCAGCAGCTCTTGAATGTGTATAACCTGCAACTGTGTTGCCAGC
____________________________________________________________
consensus TCGAGCCCCTGACTGATCAGCAGCTCTTGAATGTGTATAACCTGCAACTGTGTTGCCAGC
. : . : . : . : . : . :
rJMSF008E17+ AGGCCGAGGATGCCCTCACCCAAGGAATGGATAAACTGCAGCAGAGTCTGGGTCAGAGCA
rJMSF006C19+ AGGCCGAGGATGCCCTCACCCAAGGAATGGATAAACTGCAGCAGAGTCTGGGTCAGAGCA
rJMSF020E03+ AGGCCGAGGATGCCCTCACCCAAGGAATGGATAAACTGCAGCAGAGTCTGGGTCAGAGCA
____________________________________________________________
consensus AGGCCGAGGATGCCCTCACCCAAGGAATGGATAAACTGCAGCAGAGTCTGGGTCAGAGCA
. : . : . : . : . : . :
rJMSF008E17+ TGAAGCTGATAAACAGCAGCGCGGGAGGAGCAGGAAGCTTCAACACTCAAATGGTGTCTG
rJMSF006C19+ TGAAGNTGATAAACAGCAGCGCGGGAGGAGCAGGAAGCTTCAACANTCAAATGGTGTCTG
rJMSF020E03+ TGAAGCTGATAAACAGCAGCGCGGGAGGAGCAGGAAGCTTCAACACTCAAATGGTGTCTG
____________________________________________________________
consensus TGAAGCTGATAAACAGCAGCGCGGGAGGAGCAGGAAGCTTCAACACTCAAATGGTGTCTG
. : . : . : . : . : . :
rJMSF008E17+ CCATGGAGAAACTGGAATCACTAGAAAGCTTCATCAACCAGGCAGATCACCTCCGCGAAC
rJMSF006C19+ CCATGGAGAAACTGGAATCACTAGAAAGCTTCATCAACCAGGCAGATCACCTCCGCGAAC
rJMSF020E03+ CCATGGAGAAACTGGAATCACTAGAAAGCTTCATCAACCAGGCAGATCACCTCCGCGAAC
____________________________________________________________
consensus CCATGGAGAAACTGGAATCACTAGAAAGCTTCATCAACCAGGCAGATCACCTCCGCGAAC
. : . : . : . : . : . :
rJMSF008E17+ AGACTTTGCAGCAGATGTGTCGAATCCTCACAACCAGGCAAGCAGCCAGGGGGCTTCTCG
rJMSF006C19+ AGACTTTGCAGCAGATGTGTCGAATCCTCACAACCAGGCAAGCAGCCAGGGGGCTTCTCG
rJMSF020E03+ AGACTTTGCAGCAGATGTGTCGAATCCTCACAACCAGGCAAGCAGCCAGGGGGCTTCTCG
____________________________________________________________
consensus AGACTTTGCAGCAGATGTGTCGAATCCTCACAACCAGGCAAGCAGCCAGGGGGCTTCTCG
. : . : . : . : . : . :
rJMSF008E17+ CGTTTGGGGAGTACTTCCAACGCCTGCGTGCTCTAAGCTCAATCTGGGCTGCTCGTCCCT
rJMSF006C19+ CGTTTGGGGAGTACTTCCAACGCCTGCGTGCTCTAAGCTCAATCTGGGCTGCTCGTCCCT
rJMSF020E03+ CGTTTGGGGAGTACTTCCAACGCCTGCGTGCTCTAAGCTCAATCTGGGCTGCTCGTCCCT
____________________________________________________________
consensus CGTTTGGGGAGTACTTCCAACGCCTGCGTGCTCTAAGCTCAATCTGGGCTGCTCGTCCCT
. : . : . : . : . : . :
rJMSF008E17+ ACGAAACCTATGACTAATATATACATATATGTTACTCTAAAATCTAAATCACAGTAGCCA
rJMSF006C19+ ACGAAACCTATGACTAATATATACA
rJMSF020E03+ ACGAAACCTATGACTAATATATACATATATGTTACTCTAAAATCTAAATCACAGTAGCCA
____________________________________________________________
consensus ACGAAACCTATGACTAATATATACATATATGTTACTCTAAAATCTAAATCACAGTAGCCA
. : . : . : . : . : . :
rJMSF008E17+ TTGTTTGTAACTTATGCTTGTAGTATGCTAGCTGGGAATGCCTGAGATGCACAAATCATA
rJMSF020E03+ TTGTTTGTAACTTATGCTTGTAGTATGCTAGCTGGGAATGCCTGAGATGCACAAATCATA
____________________________________________________________
consensus TTGTTTGTAACTTATGCTTGTAGTATGCTAGCTGGGAATGCCTGAGATGCACAAATCATA
. : . : . : . : . : . :
rJMSF008E17+ AGTAGATCTTATCAATGACCAAATATATATATAAAACAATAAATGTGTATCTA
rJMSF020E03+ AGTAGATCTTATCAATGACCAAATATATATATAAAACAATAAATGTGTATCTACTATAAT
____________________________________________________________
consensus AGTAGATCTTATCAATGACCAAATATATATATAAAACAATAAATGTGTATCTACTATAAT