Contig 002838:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002C04Sequence499008723 (6)ref|XP_009605268.1|1e-08PREDICTED: patatin-like protein 6 [Nicotiana tomentosiformis]736002838 (4)ref|XP_009764486.1|2e-150PREDICTED: patatin-like protein 6 [Nicotiana sylvestris]
JMFF004I17Sequence507008723 (6)ref|XP_009605268.1|1e-09PREDICTED: patatin-like protein 6 [Nicotiana tomentosiformis]727002838 (4)ref|XP_009764486.1|2e-148PREDICTED: patatin-like protein 6 [Nicotiana sylvestris]
JMSF019K01Sequence442009288 (3)ref|XP_004307392.1|3e-09PREDICTED: patatin-like protein 6 [Fragaria vesca subsp. vesca] ref|XP_011469663712002838 (4)ref|XP_009764486.1|8e-42PREDICTED: patatin-like protein 6 [Nicotiana sylvestris]
JMSF035B10Sequence644009288 (3)ref|XP_009764486.1|5e-44PREDICTED: patatin-like protein 6 [Nicotiana sylvestris]686002838 (4)ref|XP_009764486.1|6e-42PREDICTED: patatin-like protein 6 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF004I17+                                          CTCTCCAGTACGGCGCCGTTTCTGTTCT
rJMFF002C04+                                  GCTACGACCTCTCCAGTACGGCGCCGTTTCTGTTCT
                      ____________________________________________________________
consensus                                     GCTACGACCTCTCCAGTACGGCGCCGTTTCTGTTCT
 
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rJMFF004I17+          CCCGAGCCGACGCGCTGGAGACGGAGAGCTACGACTTCCGGCTCTGGGAGGTGTGCCGAG
rJMFF002C04+          CCCGAGCCGACGCGCTGGAGACGGAGAGCTACGACTTCCGGCTCTGGGAGGTGTGCCGAG
                      ____________________________________________________________
consensus             CCCGAGCCGACGCGCTGGAGACGGAGAGCTACGACTTCCGGCTCTGGGAGGTGTGCCGAG
 
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rJMFF004I17+          CCACGTCAGCGGAGCCGGGAGTGTTCGAGCCGGTTTGCATGACGTCAGTGGACGGGTCGA
rJMFF002C04+          CCACGTCAGCGGAGCCGGGAGTGTTCGAGCCGGTTTGCATGACGTCAGTGGACGGGTCGA
                      ____________________________________________________________
consensus             CCACGTCAGCGGAGCCGGGAGTGTTCGAGCCGGTTTGCATGACGTCAGTGGACGGGTCGA
 
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rJMFF004I17+          CCCGGTGCGTGGCGGTGGACGGAGGATTAGCCATGAGCAACCCGACGGCGGCGGCGATCA
rJMFF002C04+          CCCGGTGCGTGGCGGTGGACGGAGGATTAGCCATGAGCAACCCGACGGCGGCGGCGATCA
                      ____________________________________________________________
consensus             CCCGGTGCGTGGCGGTGGACGGAGGATTAGCCATGAGCAACCCGACGGCGGCGGCGATCA
 
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rJMFF004I17+          CGCACGTGCTCCACAACAAGCAGGAGTTCCCTTTCGTGAGAGGCGTCGAGGACATTTTGG
rJMFF002C04+          CGCACGTGCTCCACAACAAGCAGGAGTTCCCTTTCGTGAGAGGCGTCGAGGACATTTTGG
                      ____________________________________________________________
consensus             CGCACGTGCTCCACAACAAGCAGGAGTTCCCTTTCGTGAGAGGCGTCGAGGACATTTTGG
 
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rJMFF004I17+          TACTTTCCCTCGGCACGGCCCAGCTTTTAGAAGGCAGCTTTGAATATGAACAAGTCAAGG
rJMFF002C04+          TACTTTCCCTCGGCACGGCCCAGCTTTTAGAAGGCAGCTTTGAATATGAACAAGTCAAGG
                      ____________________________________________________________
consensus             TACTTTCCCTCGGCACGGCCCAGCTTTTAGAAGGCAGCTTTGAATATGAACAAGTCAAGG
 
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rJMFF004I17+          GCTGGAAGGCCAAGCAATGGGCTATACCTATGGCTCGCATCTCCGGCGACGGCTCCGCCG
rJMFF002C04+          GCTGGAAGGCCAAGCAATGGGCTATACCTATGGCTCGCATCTCCGGCGACGGCTCCGCCG
                      ____________________________________________________________
consensus             GCTGGAAGGCCAAGCAATGGGCTATACCTATGGCTCGCATCTCCGGCGACGGCTCCGCCG
 
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rJMFF004I17+          ACTTAGTCGACCACGTCGTCGCCATGGCTTTCGGCCACTCTCGGACCACCAATTACGTCC
rJMFF002C04+          ACTTAGTCGACCACGTCGTCGCCATGGCTTTCGGCCACTCTCGGACCACCAATTACGTCC
                      ____________________________________________________________
consensus             ACTTAGTCGACCACGTCGTCGCCATGGCTTTCGGCCACTCTCGGACCACCAATTACGTCC
 
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rJMFF004I17+          GAGTTCAGGCCAATGGATTTAACTCTAGTAGTTGCGGAGTGAGCCTAGACACCGACCCGA
rJMFF002C04+          GAGTTCAGGCCAATGGATTTAACTCTAGTAGTTGCGGAGTGAGCCTAGACACCGACCCGA
rJMSF035B10+                                                                   CGA
rJMSF019K01+                                                                   CGA
                      ____________________________________________________________
consensus             GAGTTCAGGCCAATGGATTTAACTCTAGTAGTTGCGGAGTGAGCCTAGACACCGACCCGA
 
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rJMFF004I17+          GTCCCAACAATGTGGAAAGGCTCGTTGGGATAGCGGATGAAATGCTGAAGCAGAAAAACG
rJMFF002C04+          GTCCCAACAATGTGGAAAGGCTCGTTGGGATAGCGGATGAAATGCTGAAGCAGAAAAACG
rJMSF035B10+          GTCCTAACAATGTGAAATTGCTCGTGGGGATAGCGGACGAAATGCTGAAACAGAAAAACG
rJMSF019K01+          GTCCTAACAATGTGAAATTGCTCGTGGGGATAGCGGACGAAATGCTGAAACAGAAAAACG
                      ____________________________________________________________
consensus             GTCCTAACAATGTGGAATTGCTCGTTGGGATAGCGGATGAAATGCTGAAGCAGAAAAACG
 
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rJMFF004I17+          TGGAGTCTGTGCTCTTCGGTGGCAAGAGGATTGGCGAGCAGAGCAATTTCGAGAAACTGG
rJMFF002C04+          TGGAGTCTGTGCTCTTCGGTGGCAAGAGGATTGGCGAGCAGAGCAATTTCGAGAAACTGG
rJMSF035B10+          TGGAATCTGTTCTTTTCGGTGGCAAGAGGGTTGGAGAGCAAAGCAATTCCGAGAAACTCG
rJMSF019K01+          TGGAATCTGTTCTTTTCGGTGGCAAGAGGGTTGGAGAGCAAAGCAATTCCGAGAAACTCG
                      ____________________________________________________________
consensus             TGGAGTCTGTTCTTTTCGGTGGCAAGAGGGTTGGCGAGCAGAGCAATTTCGAGAAACTGG
 
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rJMFF004I17+          AGTGGTTTGCTGGAGAACTGGTGCAAGAACATCAGAGGAGGAGTTGC             
rJMFF002C04+          AGTGGTTTGCTGGAGAACTGGTGCAAGAACATCAGAGGAGGAGTTGC             
rJMSF035B10+          ACTGGTTTGCAGCAGAACTTGTGCAAGAGCATCAGAGGAGGAGTTGCCGTATAGCTCCCN
rJMSF019K01+          ACTGGTTTGCTGCAGAACTTGTGCAAGAGCATCAGAGGAGGAGTTGCCGTATAGCTCCCN
                      ____________________________________________________________
consensus             AGTGGTTTGCTGGAGAACTTGTGCAAGAGCATCAGAGGAGGAGTTGCCGTATAGCTCCCN
 
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rJMSF035B10+          CTGTTGCGTTCAAGCAAGCTTCCTCGAACGCTTCCCAAACAACGCTCAAATAATAAAAAA
rJMSF019K01+          CTGTTGCGTTCAAGCAAGCTTCCTCGAACGCTTCCCAAACAACGCTCAAATAATAAAAAA
                      ____________________________________________________________
consensus             CTGTTGCGTTCAAGCAAGCTTCCTCGAACGCTTCCCAAACAACGCTCAAATAATAAAAAA
 
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rJMSF035B10+          ACTAAAAGATATAAAAAGACGGTGGAGACTGGAGAGACTGAAATGTGAGTCTGAACTCTG
rJMSF019K01+          ACTAAAAGATATAAAAAGACGGTGGAGACTGGAGAGACTGAAATGTGAGTNTGAACTCTG
                      ____________________________________________________________
consensus             ACTAAAAGATATAAAAAGACGGTGGAGACTGGAGAGACTGAAATGTGAGTCTGAACTCTG
 
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rJMSF035B10+          AAGGTAAAAATAAAAGAAACTGGAAAAAAAAAGTGAAGAAGAACTGTAAAAGTAGGAGCA
rJMSF019K01+          AAGGTAAAAATAAAAGAAACTGGAAAAAAAAAGTGAAGAAGAACTGTAAAAGTAGGAGCA
                      ____________________________________________________________
consensus             AAGGTAAAAATAAAAGAAACTGGAAAAAAAAAGTGAAGAAGAACTGTAAAAGTAGGAGCA
 
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rJMSF035B10+          ACTTTTACTTTGGGAGAGAGATGGTGGGGAAGAAAGGGCAGCCTCAACTGTAAAAACTAC
rJMSF019K01+          ACTTTTACTTTGGGAGAGAGATGGTGGGGAAGAAAGGGCAGCCTCAACTGTAAAAACTAC
                      ____________________________________________________________
consensus             ACTTTTACTTTGGGAGAGAGATGGTGGGGAAGAAAGGGCAGCCTCAACTGTAAAAACTAC
 
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rJMSF035B10+          ATATAAAAACAGGGATAGAGATATTGTGTGGGATTCTTTGTCTGCCTGAGGACAGGCATT
rJMSF019K01+          ATATAAAAACAGGGATAGAGATATTGTGTGGGATTCTTTGTCTGCCTGAGGACAGGCATT
                      ____________________________________________________________
consensus             ATATAAAAACAGGGATAGAGATATTGTGTGGGATTCTTTGTCTGCCTGAGGACAGGCATT
 
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rJMSF035B10+          CTGGTGAGCTTTCCACTCTGAAAAGATGAAAGC-AATGCAAATCCCATTTGAATCCTTTG
rJMSF019K01+          CTGGTGAGCTTTCCACTCTGAAAAGATGAAAGCAAATGCAAATCCCATTTGAATCCTTTG
                      ____________________________________________________________
consensus             CTGGTGAGCTTTCCACTCTGAAAAGATGAAAGCAAATGCAAATCCCATTTGAATCCTTTG
 
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rJMSF035B10+          ATGTATATTCAAGAATTTGGAGGCAGGGATAATCTGATTCTTTTTGGGGGGTACAAGTGC
rJMSF019K01+          ATGTATATTCAAGAATTTGGAGGCAGGGATAATCTGATTCTTTTTGGGGGGTACAAGTGC
                      ____________________________________________________________
consensus             ATGTATATTCAAGAATTTGGAGGCAGGGATAATCTGATTCTTTTTGGGGGGTACAAGTGC
 
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rJMSF035B10+          CCTTGTCTTTTGTGGCAGTCCTTAAAAAAATGGC                          
rJMSF019K01+          CCTTGTCTTTTGTGGCAGTCCTTAAAAAAATGGCTTGTGACTACATTATGAAGAAAAGTA
                      ____________________________________________________________
consensus             CCTTGTCTTTTGTGGCAGTCCTTAAAAAAATGGCTTGTGACTACATTATGAAGAAAAGTA