Contig 002836:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018G21Sequence500002836 (9)gb|KHG21178.1|1e-7860S ribosomal protein L32-1 [Gossypium arboreum]605002836 (9)gb|KHG21178.1|5e-7860S ribosomal protein L32-1 [Gossypium arboreum]
JMFF031B16Sequence657002836 (9)ref|XP_002533495.1|2e-5460S ribosomal protein L32, putative [Ricinus communis] gb|EEF28882.1| 60S riboso630002836 (9)ref|XP_002533495.1|2e-5460S ribosomal protein L32, putative [Ricinus communis] gb|EEF28882.1| 60S riboso
JMFN035E15Sequence564002836 (9)ref|XP_002519752.1|3e-7560S ribosomal protein L32, putative [Ricinus communis] gb|EEF42725.1| 60S riboso
JMSF019E20Sequence258002836 (9)gb|KHG21178.1|3e-2160S ribosomal protein L32-1 [Gossypium arboreum]646002836 (9)gb|KHG21178.1|7e-7960S ribosomal protein L32-1 [Gossypium arboreum]
JMSF024I06Sequence642002836 (9)ref|XP_006437227.1|6e-77hypothetical protein CICLE_v10032912mg [Citrus clementina] gb|ESR50467.1| hypoth599002836 (9)ref|XP_006437227.1|4e-77hypothetical protein CICLE_v10032912mg [Citrus clementina] gb|ESR50467.1| hypoth

Alignment

This contig is upended


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JMFF031B16-                                              GTGCAGCCTCTTCGCGCTTACAGGG
rJMFF031B16+                                             GTGCAGCCTCTTCGCGCTTACAGGG
JMFF018G21-                                               TGCATCCTCTTCGCGCTTACAGGG
rJMSF024I06+                                                 AGCCTCTTCGCGCTTACAGGG
JMSF024I06-                                                  AGCCTCTTCGCGCTTACAGGG
rJMFF018G21+                                              TGCATCCTCTTCGCGCTTACAGGG
                      ____________________________________________________________
consensus                                                GTGCAGCCTCTTCGCGCTTACAGGG
 
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JMFF031B16-           AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
rJMFF031B16+          AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
JMFN035E15+                                                   GTCCCTTTGCTTGATAAGAA
JMFF018G21-           AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
rJMSF024I06+          AGCTCTCACCGCTTCAGCTCAGGCAGTAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
JMSF024I06-           AGCTCTCACCGCTTCAGCTCAGGCAGTAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
JMSF019E20-                                                         TTGCTTGACAAAAA
rJMFF018G21+          AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
rJMSF019E20+                                                        TTGCTTGACAAAAA
                      ____________________________________________________________
consensus             AGCTCTCACCGCTTCAGCTCAG----TAGAAACTATGGCTGTCCCTTTGCTTGACAAAAA
 
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JMFF031B16-           GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
rJMFF031B16+          GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
JMFN035E15+           GATTGTGAAGAAGCGCGTGAAGAAGTTTAAGAGGCCACAGAGTGACCGCTACATCTCTGT
JMFF018G21-           GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
rJMSF024I06+          GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
JMSF024I06-           GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
JMSF019E20-           GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
rJMFF018G21+          GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
rJMSF019E20+          GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
                      ____________________________________________________________
consensus             GATTGTGAAGAAGCGTGTCAAGAAGTTCAAGAGGCCACAGAGTGACCGATATATTTCTGT
 
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JMFF031B16-           AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
rJMFF031B16+          AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
JMFN035E15+           TAAGGAAAACTGGCGTAGGCCCAAGGGTATTGATTCCCGTGTGAGGAGAAAGTTCAAAGG
JMFF018G21-           AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
rJMSF024I06+          AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
JMSF024I06-           AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
JMSF019E20-           AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
rJMFF018G21+          AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
rJMSF019E20+          AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
                      ____________________________________________________________
consensus             AAAGGAAAGCTGGCGGAGGCCTAAGGGTATTGACTCTCGTGTGAGGAGAAAGTTCAAAGG
 
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JMFF031B16-           ATGCACTCTTATGCCCAATA-TGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
rJMFF031B16+          ATGCACTCTTATGCCCAATA-TGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
JMFN035E15+           ATGTACTCTGATGCCCAACATTGGCTATGGTTCAGACAAGAAGACCCGCCACTATCTACC
JMFF018G21-           ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
rJMSF024I06+          ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
JMSF024I06-           ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
JMSF019E20-           ATGCACTCTTATGCCCAATATTGG                                    
rJMFF018G21+          ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
rJMSF019E20+          ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
                      ____________________________________________________________
consensus             ATGCACTCTTATGCCCAATATTGGTTATGGCTCAGACAAGAAGACCCGCCATTATCTTCC
 
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JMFF031B16-           CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
rJMFF031B16+          CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
JMFN035E15+           AAATGGTTTTAAGAAATTCCTTGTGCATAATGTTCAAGAATTGGAACTCTTGATGATGCA
JMFF018G21-           CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
rJMSF024I06+          CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
JMSF024I06-           CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
rJMFF018G21+          CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
rJMSF019E20+          CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
                      ____________________________________________________________
consensus             CAATGGTTTCAAGAAATTCGTTGTTCATAATGTCCAGGAGTTGGAACTTTTGATGATGCA
 
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JMFF031B16-           CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
rJMFF031B16+          CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
JMFN035E15+           CAACAGGACTTACTGTGCGGAGATAGCACACAATATTTCAACAAAGAAAAGAAAGGAAAT
JMFF018G21-           CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
rJMSF024I06+          CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
JMSF024I06-           CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
rJMFF018G21+          CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
rJMSF019E20+          CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
                      ____________________________________________________________
consensus             CAACAGGACTTACTGTGCAGAGATTGCGCACAATGTATCCACCAGGAAAAGGAAGGAAAT
 
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JMFF031B16-           CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
rJMFF031B16+          CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
JMFN035E15+           TGTTGAGCGCGCTGCACAGTTGGATGTTGTTGTGACCAACAAATTGGCAAGGTTGCGTAG
JMFF018G21-           CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
rJMSF024I06+          CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
JMSF024I06-           CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
rJMFF018G21+          CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
rJMSF019E20+          CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
                      ____________________________________________________________
consensus             CGTTGAGCGTGCTTCCCAGTTGGATGTTGTTGTGACCAACAAATTGGCTAGGTTACGTAG
 
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JMFF031B16-           CCAGGAAGACGAGT                                              
rJMFF031B16+          CCAGGAAGACGAGTGAGCTA                                        
JMFN035E15+           CCAGGAAGACGAGTGAGCTA                                        
JMFF018G21-           CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
rJMSF024I06+          CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
JMSF024I06-           CCAGGAAGACGAGT                                              
rJMFF018G21+          CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
rJMSF019E20+          CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
                      ____________________________________________________________
consensus             CCAGGAAGACGAGTGAGCTATCTTTTGTTATAGTTTCAGGCATTCTGGTGATTTATTTAC
 
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rJMSF024I06+          CCAACCAAGTTATATTTGTTTTAGTTTGTATTTCAGAACACTTTGGCCTTACTGTTCACT
rJMFF018G21+          CCAACCAAGTTATATTTGTTTTAGTTTGTATTTCAGAACACTTTGGCCTTACTGTTCACT
rJMSF019E20+          CCAACCAAGTTATATTTGTTTTAGTTTGTATTTCAGAACACTTTGGCCTTACTGTTCACT
                      ____________________________________________________________
consensus             CCAACCAAGTTATATTTGTTTTAGTTTGTATTTCAGAACACTTTGGCCTTACTGTTCACT
 
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rJMSF024I06+          GTTCATTTTACATTTTTGCTTTATTATGTACTCTG                         
rJMFF018G21+          GTTCATTTTACATTTTTGCTTTATTATGTACTCTGTATCTTTCTG               
rJMSF019E20+          GTTCATTTTACATTTTTGCTTTATTATGTACTCTGTATCTTTCTGCCAAGCTTTTGCGTA
                      ____________________________________________________________
consensus             GTTCATTTTACATTTTTGCTTTATTATGTACTCTGTATCTTTCTGCCAAGCTTTTGCGTA