clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF019E08 | Sequence | 312 | 006198 (4) | ref|XP_009587205.1| | 9e-29 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27 | 746 | 002835 (3) | ref|XP_010315042.1| | 1e-57 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27 |
JMSF037A24 | Sequence | 656 | 006198 (4) | ref|XP_009587205.1| | 8e-77 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27 | 663 | 002835 (3) | ref|XP_010315042.1| | 2e-72 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27 |
JMSF050I02 | Sequence | 604 | 006198 (4) | ref|XP_009587205.1| | 2e-72 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27 | 321 | 002835 (3) | ref|XP_009777836.1| | 7e-20 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27 |
This contig is upended
. : . : . : . : . : . :
rJMSF037A24+ C
____________________________________________________________
consensus C
. : . : . : . : . : . :
rJMSF037A24+ GATTAAGGGTCATCCATAGAGATCTCAAAGCCAGTAATGTTTTGTTGGATAACAATATGA
____________________________________________________________
consensus GATTAAGGGTCATCCATAGAGATCTCAAAGCCAGTAATGTTTTGTTGGATAACAATATGA
. : . : . : . : . : . :
rJMSF037A24+ ATCCTAAGATTCAGACTTTGGGCTGGCAAGAAGTGTTGGAGGGGATGCAACAGAAGCAAA
rJMSF019E08+ GTTGGAGGGGATGCNACAGAAGCAAA
____________________________________________________________
consensus ATCCTAAGATTCAGACTTTGGGCTGGCAAGAAGTGTTGGAGGGGATGCAACAGAAGCAAA
. : . : . : . : . : . :
rJMSF037A24+ TGCAAGTCGTATCATGGGGACACATGGATACATATCCCCAGAATATGCTGCTAATGGAAT
rJMSF019E08+ TGCAAGTCGTATCATGGGGACACATGGATACATATCCCCAGAATATGCTGCTAATGGAAT
____________________________________________________________
consensus TGCAAGTCGTATCATGGGGACACATGGATACATATCCCCAGAATATGCTGCTAATGGAAT
. : . : . : . : . : . :
rJMSF037A24+ ATTTTCCATAAAATCAGATACATATAGCTTTGGGGTGCTATTGTTGGAGATTGTAGCTGG
rJMSF019E08+ ATTTTCCATAAAATCAGATACATATAGCTTTGGGGTGCTATTGTTGGAGATTGTAGCTGG
____________________________________________________________
consensus ATTTTCCATAAAATCAGATACATATAGCTTTGGGGTGCTATTGTTGGAGATTGTAGCTGG
. : . : . : . : . : . :
rJMSF050I02+ AACCTTATTGGCCATGCTTG
rJMSF037A24+ GAAACGAAATAGAGGATTTTCTCACCCAGACCACTGTCTCAACCTTATTGGCCATGCTTG
rJMSF019E08+ GAAACGAAATAGAGGATTTTCTCACCCAGACCACTGTNTCAACCTTATTGGCCATGCTTG
____________________________________________________________
consensus GAAACGAAATAGAGGATTTTCTCACCCAGACCACTGTCTCAACCTTATTGGCCATGCTTG
. : . : . : . : . : . :
rJMSF050I02+ GAAGCTGTATAAGCAAAACTTGTCGTTGGAANTAANTGANGNACATCTAGCTCCNTCNTG
rJMSF037A24+ GAAGCTGTATAAGCAAAACTTGTCGTTGGAATTAATTGATGTACATCTAGCTCCATCATG
rJMSF019E08+ GAAGCTGTATAAGCAAAACTTGTCGTTGGAATTAATTGATGTACATCTAGCTCCNTCATG
____________________________________________________________
consensus GAAGCTGTATAAGCAAAACTTGTCGTTGGAATTAATTGATGTACATCTAGCTCCATCATG
. : . : . : . : . : . :
rJMSF050I02+ TGNTNTATNTCAAGTTCAAAGANGNATCCNTGTTGGNCTTTTANGNGNGCNGCAACGCCC
rJMSF037A24+ TGATCTATCTCAAGTTCAAAGATGTATCCATGTTGGACTTTTATGTGTGCAGCAACGCCC
rJMSF019E08+ TGATCTATCTCAAGTTCAAAGATGTATCCNTGTTGGACTTTTATGNGTGCAGCAACGCCC
____________________________________________________________
consensus TGATCTATCTCAAGTTCAAAGATGTATCCATGTTGGACTTTTATGTGTGCAGCAACGCCC
. : . : . : . : . : . :
rJMSF050I02+ NGATGATAGNCCNACCNTGTNTTATGTTGNAACGATGTTGTNTAATGATAGCNACCTACC
rJMSF037A24+ AGATGATAGACCAACCATGTCTTATGTTGTAACGATGTTGTCTAATGATAGCAACCTACC
rJMSF019E08+ NGATGATAGNCCNACCNTGTCTTATGTTGTAACGATGTTGTCTAATGATAGCAACCTACC
____________________________________________________________
consensus AGATGATAGACCAACCATGTCTTATGTTGTAACGATGTTGTCTAATGATAGCAACCTACC
. : . : . : . : . : . :
rJMSF050I02+ TGAAGCAAATGNGCCNGGNTTTTTCNCCGAATCAAAAGNGNTNGAAGCNGNTTNCTNTTC
rJMSF037A24+ TGAAGCAAATGAGCCAGGATTTTTCACCGAATCAAAAGTGATCGAAGCAGATTACTCTTC
rJMSF019E08+ TGAAGCAAATGAGCCNGGATTTTTCNCCGAATCAAAAGTGATCGAAGCNGNTTACTNTTC
____________________________________________________________
consensus TGAAGCAAATGAGCCAGGATTTTTCACCGAATCAAAAGTGATCGAAGCAGATTACTCTTC
. : . : . : . : . : . :
rJMSF050I02+ AAGCNCTCAAGGNACAGNTTCNAGAAATGAATGCNCCNTCNCTGCTTTGGNTCCTCGG
rJMSF037A24+ AAGCACTCAAGGAACAGCTTCAAGAAATGAATGCACCATCACTGCTTTGGATCCTCGGTA
rJMSF019E08+ AAGCNCTCAAGGAACAGCTTCAAGAAATGAATGCNCCNTCNCTGCTTTGGATCCTCGGTA
____________________________________________________________
consensus AAGCACTCAAGGAACAGCTTCAAGAAATGAATGCACCATCACTGCTTTGGATCCTCGGTA
. : . : . : . : . : . :
rJMSF037A24+ GAGAACAGACAATAAATAAACCGTAGCAAATTAGTTTCCCTTTTAATTTGGTAATGACGT
rJMSF019E08+ GNGAACNGNCNATAAATAAACCGTAGCAAATTAGTTTCCCTTTTAATTTGGTAATGACGT
____________________________________________________________
consensus GAGAACAGACAATAAATAAACCGTAGCAAATTAGTTTCCCTTTTAATTTGGTAATGACGT
. : . : . : . : . : . :
rJMSF037A24+ AA
rJMSF019E08+ AATGTCNCTGCTGAAAATTATGAAATTTTCGATCAACTGAAAGTGATNTTAAATCAATTC
____________________________________________________________
consensus AATGTCNCTGCTGAAAATTATGAAATTTTCGATCAACTGAAAGTGATNTTAAATCAATTC
. : . : . : . : . : . :
rJMSF019E08+ AAAAGNGAATGCGCTCTTCTGATTGCTTAGTCNGGCTTATGACCCCTCTCNCTATTTAGT
____________________________________________________________
consensus AAAAGNGAATGCGCTCTTCTGATTGCTTAGTCNGGCTTATGACCCCTCTCNCTATTTAGT
. : . : . : . : . : . :
rJMSF019E08+ CTATATGCTCCTTAATTTTTTTTATTTTTTTTTTGGTGTAATTTTTATAAGTTGTATGTC
____________________________________________________________
consensus CTATATGCTCCTTAATTTTTTTTATTTTTTTTTTGGTGTAATTTTTATAAGTTGTATGTC