Contig 002833:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019B04Sequence274003652 (5)ref|XP_006348242.1|5e-35PREDICTED: choline transporter-like protein 2-like [Solanum tuberosum]771002833 (4)emb|CDP05903.1|1e-101unnamed protein product [Coffea canephora]
JMSF020F02Sequence405003652 (5)ref|XP_006348242.1|5e-52PREDICTED: choline transporter-like protein 2-like [Solanum tuberosum]708002833 (4)emb|CDP05903.1|6e-110unnamed protein product [Coffea canephora]
JMSF026D12Sequence713003652 (5)ref|XP_006348242.1|2e-131PREDICTED: choline transporter-like protein 2-like [Solanum tuberosum]737002833 (4)emb|CDP05903.1|9e-102unnamed protein product [Coffea canephora]
JMSF028P04Sequence171003652 (5)ref|XP_006348242.1|5e-21PREDICTED: choline transporter-like protein 2-like [Solanum tuberosum]702002833 (4)emb|CDP05903.1|3e-95unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF020F02+                                TCTTGGTTCTGTGTTGGNTTCGTTTATCGAGCCTATCC
                      ____________________________________________________________
consensus                                   TCTTGGTTCTGTGTTGGNTTCGTTTATCGAGCCTATCC
 
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rJMSF020F02+          GTTTCATACTTGGAGCAATTCGCCGCAGGCTTAAAACTTCTAATTCTACACCGGAGAGCT
rJMSF026D12+                     GGAGCAATTCGCCGCAGGCTTAAAACTTCTAATTCTACACCGGAGAGCT
rJMSF028P04+                                                           ACCGGAGAGCT
rJMSF019B04+                     GGAGCAATTCGCCGCAGGCTTAAAACTTCTAATTCTACACCGGAGAGCT
                      ____________________________________________________________
consensus             GTTTCATACTTGGAGCAATTCGCCGCAGGCTTAAAACTTCTAATTCTACACCGGAGAGCT
 
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rJMSF020F02+          GGCCGGGAAAGATGGCATTTCATACTTCTCAGGGTTGCTTGAGAGGTGTTAGCTGGATCA
rJMSF026D12+          GGCCGGGAAAGATGGCATTTCATACTTCTCAGGGTTGCTTGAGAGGTGTTAGCTGGATCA
rJMSF028P04+          GGCCGGGAAAGATGGCATTTCATACTTCTCAGGGTTGCTTGAGAGGTGTNAGCTGGATCA
rJMSF019B04+          GGCCGGGAAAGATGGCATTTCATACTTCTCAGGGTTGCTTGAGAGGTGTTAGCTGGATCA
                      ____________________________________________________________
consensus             GGCCGGGAAAGATGGCATTTCATACTTCTCAGGGTTGCTTGAGAGGTGTTAGCTGGATCA
 
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rJMSF020F02+          TGAAATCTGTGAACCGTAATGCTTATATAATGATAGCTATTACAGGGAAGAGTTTCTTCA
rJMSF026D12+          TGAAATCTGTGAACCGTAATGCTTATATAATGATAGCTATTACAGGGAAGAGTTTCTTCA
rJMSF028P04+          TGAAATCTGTGAACCGTAATGCTTATATAATGATAGCTATTACAGGGAAGAGTTTCTTCA
rJMSF019B04+          TGAAATCTGTGAACCGTAATGCTTATATAATGATAGCTATTACAGGGAAGAGTTTCTTCA
                      ____________________________________________________________
consensus             TGAAATCTGTGAACCGTAATGCTTATATAATGATAGCTATTACAGGGAAGAGTTTCTTCA
 
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rJMSF020F02+          AAGCTTCTGAAATTGCAACAGAACTCATTATAAGTAACGTGCTTCGGATAGGAAAGGTGA
rJMSF026D12+          AAGCTTCTGAAATTGCAACAGAACTCATTATAAGTAACGTGCTTCGGATAGGAAAGGTGA
rJMSF028P04+          AAGCTTCTGAAATTGCAACAGAACTCATTATAAGTAACGTGCTTCGGATAGGAAAGGTGA
rJMSF019B04+          AAGCTTCTGAAATTGCAACAGAACTCATTATAAGTAACGTGCTTCGGATAGGAAAGGTGA
                      ____________________________________________________________
consensus             AAGCTTCTGAAATTGCAACAGAACTCATTATAAGTAACGTGCTTCGGATAGGAAAGGTGA
 
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rJMSF020F02+          ATGTGATTGGCGATGTTATTCTCTTTCTCGGGAAGCTACTCGTGAGTCTTGTGAGTGCTT
rJMSF026D12+          ATGTGATTGGCGATGTTATTCTCTTTCTCGGGAAGCTACTCGTGAGTCTTGTGAGTGCTT
rJMSF028P04+          ATGTGATTGGCGATGTTATTCTCTTTCTCGGGAAGCTACTCGTGAGTCTTGTGAGTGCTT
rJMSF019B04+          ATGTGATTGGCGATGTTATTCTCTTTCTCGGGAAGCTACTCGTGAGTCTTGTGAGTGCTT
                      ____________________________________________________________
consensus             ATGTGATTGGCGATGTTATTCTCTTTCTCGGGAAGCTACTCGTGAGTCTTGTGAGTGCTT
 
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rJMSF020F02+          TGTTTGCTTTTCTCATGCTGGATACTCACAAGTACAAGTCCTCGAATCACAAGATCTCGT
rJMSF026D12+          TGTTTGCTTTTCTCATGCTGGATACTCACAAGTACAAGTCCTCGAATCACAAGATCTCGT
rJMSF028P04+          TGTTTGCTTTTCTCATGCTGGATACTCACAAGTACAAGTCCTCGAATCACAAGATCTCGT
rJMSF019B04+          TGTTTGCTTTTCTCATGCTGGATACTCACAAGTACAAGTCCTCGAATCACAAGATCTCGT
                      ____________________________________________________________
consensus             TGTTTGCTTTTCTCATGCTGGATACTCACAAGTACAAGTCCTCGAATCACAAGATCTCGT
 
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rJMSF020F02+          CCCCGCTATTTCCTGTGCTGGTGTGCTGGGGGATTGGCTATGTTGTGGCGACCCTTTTCT
rJMSF026D12+          CCCCGCTATTTCCTGTGCTGGTGTGCTGGGGGATTGGCTATGTTGTGGCGACCCTTTTCT
rJMSF028P04+          CCCCGCTATTTCCTGTGCTGGTGTGCTGGGGGATNGGCTATGTTGTGGCGACCCTTTTCT
rJMSF019B04+          CCCCGCTATTTCCTGTGCTGGTGTGCTGGGGGATTGGCTATGTTGTGGCGACCCTTTTCT
                      ____________________________________________________________
consensus             CCCCGCTATTTCCTGTGCTGGTGTGCTGGGGGATTGGCTATGTTGTGGCGACCCTTTTCT
 
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rJMSF020F02+          TCTCGGTGGTTGAGATGTCGATCGATACTATAATCCTTTCGTTTTGCCAAGACTCGGAGG
rJMSF026D12+          TCTCGGTGGTTGAGATGTCGATCGATACTATAATCCTTTCGTTTTGCCAAGACTCGGAGG
rJMSF028P04+          TCTCGGTGGTTGAGATGTCGATCGATACTATAATCCTTTCGTTTTGCCAAGACTCGGAGG
rJMSF019B04+          TCTCGGTGGTTGAGATGTCGATCGATACTATAATCCTTTCGTTTTGCCAAGACTCGGAGG
                      ____________________________________________________________
consensus             TCTCGGTGGTTGAGATGTCGATCGATACTATAATCCTTTCGTTTTGCCAAGACTCGGAGG
 
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rJMSF020F02+          AGCACCATGGGACTGCCCAGTTTGCGCCCCCGCTTTTGATGGAGACTTTGGACAGCCAAA
rJMSF026D12+          AGCACCATGGGACTGCCCAGTTTGCGCCCCCGCTTTTGATGGAGACTTTGGACAGCCAAA
rJMSF028P04+          AGCACCATGGGACTGCCCAGTTTGCGCCCCCGCTTTTGATGGAGACTTTGGACAGCCAAA
rJMSF019B04+          AGCACCATGGGACTGCCCAGTTTGCGCCCCCGCTTTTGATGGAGACTTTGGACAGCCAAA
                      ____________________________________________________________
consensus             AGCACCATGGGACTGCCCAGTTTGCGCCCCCGCTTTTGATGGAGACTTTGGACAGCCAAA
 
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rJMSF020F02+          ATGAGATGCAGAGACTCACGCAATGACCATTTTGAAACAGTCTACACCCCCATTGTAGTG
rJMSF026D12+          ATGAGATGCAGAGACTCACGCAATGACCATTTTGAAACAGTCTACACCCCCATTGTAGTG
rJMSF028P04+          ATGAGATGCAGAGACTCACGCAATGACCATTTTGAAACAGTCTACACCCCCATTGTAGTG
rJMSF019B04+          ATGAGATGCAGAGACTCACGCAATGACCATTTTGAAACAGTCTACACCCCCATTGTAGTG
                      ____________________________________________________________
consensus             ATGAGATGCAGAGACTCACGCAATGACCATTTTGAAACAGTCTACACCCCCATTGTAGTG
 
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rJMSF020F02+          TAGTATCATCCCCCAACCATTGTCTTAGCTTAATGTAACACTTCTTTGTAGGTGAAATTG
rJMSF026D12+          TAGTATCATCCCCCAA-CATTGTCTTAGCTTAATGTAACACTTCTTTGTAGGTGAAATTG
rJMSF028P04+          TAGTATCATCCCCCAA-CATTGTCTTAGCTTAATGTAACACTTCTTTGTAGGTGAAATTG
rJMSF019B04+          TAGTATCATCCCCCAA-CATTGTCTTAGCTTAATGTAACACTTCTTTGTAGGTGAAATTG
                      ____________________________________________________________
consensus             TAGTATCATCCCCCAA-CATTGTCTTAGCTTAATGTAACACTTCTTTGTAGGTGAAATTG
 
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rJMSF020F02+          GCTGGTGCTC                                                  
rJMSF026D12+          GCTGGTGCTCCTTTTATAAGCTCTGGTTTGGTCCTTGTTGGTTGCTTTCTGCCCCTTGTT
rJMSF028P04+          GCTGGTGCTCCTTTTATAAGCTCTGGTTTGGTCCTTGTTGGTTGCTTTCTGCCCCTTGTT
rJMSF019B04+          GCTGGTGCTCCTTTTATAAGCTCTGGTTTGGTCCTTGTTGGTTGCTTTCTGCCCCTTGTT
                      ____________________________________________________________
consensus             GCTGGTGCTCCTTTTATAAGCTCTGGTTTGGTCCTTGTTGGTTGCTTTCTGCCCCTTGTT
 
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rJMSF026D12+          TCTTTCTTCTTGACTCGTATACTAACTGT                               
rJMSF028P04+          TCTTTCTTCTTGACTCGTATACTAACTGT                               
rJMSF019B04+          TCTTTCTTCTTGACTCGTATACTAACTGTATATAGTTTCAACTTTCAAGTCAAGATCTCT
                      ____________________________________________________________
consensus             TCTTTCTTCTTGACTCGTATACTAACTGTATATAGTTTCAACTTTCAAGTCAAGATCTCT