Contig 002817:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013M05Sequence552002817 (6)ref|XP_011029030.1|3e-29PREDICTED: peamaclein-like [Populus euphratica]
JMFN028B06Sequence556002817 (6)ref|XP_011029030.1|3e-29PREDICTED: peamaclein-like [Populus euphratica]
JMFS063D02Sequence461002817 (6)ref|XP_011029030.1|1e-29PREDICTED: peamaclein-like [Populus euphratica]
JMSF016N21Sequence529002817 (6)ref|XP_011029030.1|3e-29PREDICTED: peamaclein-like [Populus euphratica]544002817 (6)ref|XP_011029030.1|3e-29PREDICTED: peamaclein-like [Populus euphratica]
JMSF040C16Sequence600021143ref|XP_011029030.1|5e-29PREDICTED: peamaclein-like [Populus euphratica]545002817 (6)ref|XP_011029030.1|3e-29PREDICTED: peamaclein-like [Populus euphratica]

Alignment

This contig is upended


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JMFN013M05+                        CAAACAACAACAACATATATAACTACTAACTCGATCAGTACAATGCA
JMFN028B06+                           ACAACAACAACATATATAACTACTAACTCGATCAGTACAATGCA
rJMSF040C16-                                                                 ATGCA
rJMSF016N21-                                                                  TGCA
                      ____________________________________________________________
consensus                          CAAACAACAACAACATATATAACTACTAACTCGATCAGTACAATGCA
 
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JMFN013M05+           ATATAATTAAGCTAAGATCAAAATCCTAGCAGATCGAATTGAAGTAGTAAAAGAGAATAA
JMFN028B06+           ATATAATTAAGCTAAGATCAAAATCCTAGCAGATCGAATTGAAGTAGTAAAAGAGAATAA
rJMSF040C16-          ATATAATTAAGCTAAGATCAAAATCCTAGCAGATCGAATTGAAGTAGTAAAAGAGAATAA
JMSF016N21+                      CTAAGATCAAAATCCTAGCAGATCGAATTGAAGTAGTAAAAGAGAATAA
JMFS063D02+                                                                     AA
rJMSF016N21-          ATATAATTAAGCTAAGATCAAAATCCTAGCAGATCGAATTGAAGTAGTAAAAGAGAATAA
                      ____________________________________________________________
consensus             ATATAATTAAGCTAAGATCAAAATCCTAGCAGATCGAATTGAAGTAGTAAAAGAGAATAA
 
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JMFN013M05+           ATCCAAAGCTTATTAGCTTAATTATTTGGCATGAGAAATGAGAAATGAGAAAGAAAGAAA
JMFN028B06+           ATCCAAAGCTTATTAGCTTAATTATTTGGCATGAGAAATGAGAAATGAGAAAGAAAGAAA
rJMSF040C16-          ATCCAAAGCTTATTAGCTTAATTATTTGGCATGAGAAATGAGAAATGAGAAAGAAAGAAA
JMSF016N21+           ATCCAAAGCTTATTAGCTTAATTATTTGGCATGAGAAATGAGAAATGAGAAAGAAAGAAA
JMFS063D02+           ATCCAAAGCTTATTAGCTTAATTATTTGGCATGAGAAATGAGAAATGAGAAAGAAAGAAA
rJMSF016N21-          ATCCAAAGCTTATTAGCTTAATTATTTGGCATGAGAAATGAGAAATGAGAAAGAAAGAAA
                      ____________________________________________________________
consensus             ATCCAAAGCTTATTAGCTTAATTATTTGGCATGAGAAATGAGAAATGAGAAAGAAAGAAA
 
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JMFN013M05+           TAGTTGGAATACATATGAAATGATATATTAGCTAGCTTAGGGGCATTTTGGTTTGCCCTT
JMFN028B06+           TAGTTGGAATACATATGAAATGATATATTAGCTAGCTATGGGGCATTTTGGTTTGCCCTT
rJMSF040C16-          TAGTTGGAATACATATGAAATGATATATTAGCTAGCTTAGGGGCATTTTGGTTTGCCCTT
JMSF016N21+           TAGTTGGAATACATATGAAATGATATATTAGCTAGCTTAGGGGCATTTTGGTTTGCCCTT
JMFS063D02+           TAGTTGGAATACATATGAAATGATATATTAGCTAGCTTAGGGGCATTTTGGTTTGCCCTT
rJMSF016N21-          TAGTTGGAATACATATGAAATGATATATTAGCTAGCTTAGGGGCATTTTGGTTTGCCCTT
                      ____________________________________________________________
consensus             TAGTTGGAATACATATGAAATGATATATTAGCTAGCTTAGGGGCATTTTGGTTTGCCCTT
 
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JMFN013M05+           GGAGTTCTTCAAGTCTCTGTAGCAAGGGCACTGGTGCTTGTTGCCGTAAGTCCCAGAAGG
JMFN028B06+           GGAGTTCTTCAAGTCTCTGTAGCAAGGGCACTGGTGCTTGTTGCCGTAAGTCCCAGAAGG
rJMSF040C16-          GGAGTTCTTCAAGTCTCTGTAGCAAGGGCACTGGTGCTTGTTGCCGTAAGTCCCAGAAGG
JMSF016N21+           GGAGTTCTTCAAGTCTCTGTAGCAAGGGCACTGGTGCTTGTTGCCGTAAGTCCCAGAAGG
JMFS063D02+           GGAGTTCTTCAAGTCTCTGTAGCAAGGGCACTGGTGCTTGTTGCCGTAAGTCCCAGAAGG
rJMSF016N21-          GGAGTTCTTCAAGTCTCTGTAGCAAGGGCACTGGTGCTTGTTGCCGTAAGTCCCAGAAGG
                      ____________________________________________________________
consensus             GGAGTTCTTCAAGTCTCTGTAGCAAGGGCACTGGTGCTTGTTGCCGTAAGTCCCAGAAGG
 
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JMFN013M05+           CACACACTTGCATTTGGCACAGCACAGTTCGCAGTACTTTATGCACCTATCCTTCACCCC
JMFN028B06+           CACACACTTGCATTTGGCACAGCACAGTTCGCAGTACTTTATGCACCTATCCTTCACCCC
rJMSF040C16-          CACACACTTGCATTTGGCACAGCACAGTTCGCAGTACTTTATGCACCTATCCTTCACCCC
JMSF016N21+           CACACACTTGCATTTGGCACAGCACAGTTCGCAGTACTTTATGCACCTATCCTTCACCCC
JMFS063D02+           CACACACTTGCATTTGGCACAGCACAGTTCGCAGTACTTTATGCACCTATCCTTCACCCC
rJMSF016N21-          CACACACTTGCATTTGGCACAGCACAGTTCGCAGTACTTTATGCACCTATCCTTCACCCC
                      ____________________________________________________________
consensus             CACACACTTGCATTTGGCACAGCACAGTTCGCAGTACTTTATGCACCTATCCTTCACCCC
 
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JMFN013M05+           AGCCTTCGCGCATCGACCGCTGCACTTCCCAGAACAATAACCTGAGGGTGCCACGGCGGA
JMFN028B06+           AGCCTTCGCGCATCGACCGCTGCACTTCCCAGAACAATAACCTGAGGGTGCCACGGCGGA
rJMSF040C16-          AGCCTTCGCGCATCGACCGCTGCACTTCCCAGAACAATAACCTGAGGGTGCCACGGCGGA
JMSF016N21+           AGCCTTCGCGCATCGACCGCTGCACTTCCCAGAACAATAACCTGAGGGTGCCACGGCGGA
JMFS063D02+           AGCCTTCGCGCATCGACCGCTGCACTTCCCAGAACAATAACCTGAGGGTGCCACGGCGGA
rJMSF016N21-          AGCCTTCGCGCATCGACCGCTGCACTTCCCAGAACAATAACCTGAGGGTGCCACGGCGGA
                      ____________________________________________________________
consensus             AGCCTTCGCGCATCGACCGCTGCACTTCCCAGAACAATAACCTGAGGGTGCCACGGCGGA
 
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JMFN013M05+           ATCAAAGGCGGAGGAGGTGATGAGAAGAAGAGGCAGCAGCACTAGGAAAAAGCTGCAGGC
JMFN028B06+           ATCAAAGGCGGAGGAGGTGATGAGAAGAAGAGGCAGCAGCACTAGGAAAAAGCTGCAGGC
rJMSF040C16-          ATCAAAGGCGGAGGAGGTGATGAGAAGAAGAGGCAGCAGCACTAGGAAAAAGCTGCAGGC
JMSF016N21+           ATCAAAGGCGGAGGAGGTGATGAGAAGAAGAGGCAGCAGCACTAGGAAAAAGCTGCAGGC
JMFS063D02+           ATCAAAGGCGGAGGAGGTGATGAGAAGAAGAGGCAGCAGCACTAGGAAAAAGCTGCAGGC
rJMSF016N21-          ATCAAAGGCGGAGGAGGTGATGAGAAGAAGAGGCAGCAGCACTAGGAAAAAGCTGCAGGC
                      ____________________________________________________________
consensus             ATCAAAGGCGGAGGAGGTGATGAGAAGAAGAGGCAGCAGCACTAGGAAAAAGCTGCAGGC
 
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JMFN013M05+           AAGTAAGCTCCTCCTTCTCATCATCATCATCTATCTTTCTTTTCCGATGATCCAAGAATA
JMFN028B06+           AAGTAAGCTCCTCCTTCTCATCATCATCATCTATCTTTCTTTTCCGATGATCCAAGAATA
rJMSF040C16-          AAGTAAGCTCCTCCTTCTCATCATCATCATCTATCTTTCTTTTCCGATGATCCAAGAATA
JMSF016N21+           AAGTAAGCTCCTCCTTCTCATCATCATCATCTATCTTTCTTTTCCGATGATCCAAGAATA
JMFS063D02+           AAGTAAGCTCCTCCTTCTCATCATCATCATCTATCTTTCTTTTCCGATGATCCAAGAATA
rJMSF016N21-          AAGTAAGCTCCTCCTTCTCATCATCATCATCTATCTTTCTTTTCCGATGATCCAAGAATA
                      ____________________________________________________________
consensus             AAGTAAGCTCCTCCTTCTCATCATCATCATCTATCTTTCTTTTCCGATGATCCAAGAATA
 
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JMFN013M05+           TTGTGTAATGTATGTGTATTATATT                                   
JMFN028B06+           TTGTGTAATGTATGTGTATTATATTGCCTGAA                            
rJMSF040C16-          TTGTGTAATGTATGTGTATTATATTGCCTGAATATTATTATATGCTAGGTTGGGTGGGCC
JMSF016N21+           TTGTGTAATGTATGTGTATTATATTGCCTGAATATTATTATATGCTAGGTTGGGTGGGCC
JMFS063D02+           TTGTGTAATGTATGTGTATTATATTGCCTGAATATTATT                     
rJMSF016N21-          TTGTGTAATGTATGTGTATTATATTGCCTGAATATTATTATATGCTAGGTTGGGTGGGCC
                      ____________________________________________________________
consensus             TTGTGTAATGTATGTGTATTATATTGCCTGAATATTATTATATGCTAGGTTGGGTGGGCC