Contig 002812:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016H17Sequence191002257 (14)ref|XP_002280247.1|1e-11PREDICTED: eukaryotic translation initiation factor 3 subunit M [Vitis vinifera688002812 (3)ref|XP_007036816.1|9e-51Zinc finger (Ran-binding) family protein, putative isoform 2 [Theobroma cacao]
JMSF040P12Sequence640002812 (3)ref|XP_004235791.1|3e-69PREDICTED: zinc finger protein VAR3, chloroplastic [Solanum lycopersicum]832002812 (3)ref|XP_006341522.1|5e-65PREDICTED: zinc finger protein VAR3, chloroplastic-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF040P12-                                    GAGCTTCGAGATTTTTTGGTTCCTTCGGAGCATCA
                      ____________________________________________________________
consensus                                      GAGCTTCGAGATTTTTTGGTTCCTTCGGAGCATCA
 
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JMSF040P12-           ATTTTCCGGAGCCGCCACCACTCCTGGGCAGCTCCTCGGCCTCCCATCCGCTTCGCCAAC
                      ____________________________________________________________
consensus             ATTTTCCGGAGCCGCCACCACTCCTGGGCAGCTCCTCGGCCTCCCATCCGCTTCGCCAAC
 
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JMSF040P12-           CCCCACCGCTATTGCTCGTCCGCGGTAGCTTCCGACTTTGCTCATGCAGTTCCGGTTAGC
                      ____________________________________________________________
consensus             CCCCACCGCTATTGCTCGTCCGCGGTAGCTTCCGACTTTGCTCATGCAGTTCCGGTTAGC
 
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JMSF040P12-           TCTGAGAATCCCGCCAATGCTCGGAACCACCCTTGGCCGGAATGGACTAGCTTTGTTGAC
                      ____________________________________________________________
consensus             TCTGAGAATCCCGCCAATGCTCGGAACCACCCTTGGCCGGAATGGACTAGCTTTGTTGAC
 
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JMSF040P12-           TGTTTGAAAACCAAAGGGTACTTAACGGAAAGTAGAACTGCTTCATCTCCGGGTGATATC
                      ____________________________________________________________
consensus             TGTTTGAAAACCAAAGGGTACTTAACGGAAAGTAGAACTGCTTCATCTCCGGGTGATATC
 
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JMSF040P12-           GCGAGCGAAGGAAATGGGAACGAGTTAGCTTATGCGGATATGAATATACTGAAAAATGCT
rJMSF040P12+                     AAATGGGAACGAGTTAGCTTATGCGGATATGAATATACTGAAAAATGCT
                      ____________________________________________________________
consensus             GCGAGCGAAGGAAATGGGAACGAGTTAGCTTATGCGGATATGAATATACTGAAAAATGCT
 
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JMSF040P12-           TGTCTCAACTTCAGTCGTGACCGTTTCGACATTCTAAAAATGTTGTCTACCGAAGATATG
rJMSF040P12+          TGTCTCAACTTCAGTCGTGACCGTTTCGACATTCTAAAAATGTTGTCTACCGAAGATATG
                      ____________________________________________________________
consensus             TGTCTCAACTTCAGTCGTGACCGTTTCGACATTCTAAAAATGTTGTCTACCGAAGATATG
 
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JMSF040P12-           CAAGCAGTTGTAGAAAAGGGATGTCCTAATCTATTTCGGAAGGCTGTTAATTCAGCAAAA
rJMSF040P12+          CAAGCAGTTGTAGAAAAGGGATGTCCTAATCTATTTCGGAAGGCTGTTAATTCAGCAAAA
                      ____________________________________________________________
consensus             CAAGCAGTTGTAGAAAAGGGATGTCCTAATCTATTTCGGAAGGCTGTTAATTCAGCAAAA
 
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JMSF040P12-           AGATTGAGAGTCTATCTACNGCTCGATGAAGGACATGCATGTGGTGCATGCAATTTGCGG
rJMSF040P12+          AGATTGAGAGTCTATCTACAGCTCGATGAAGGACATGCATGTGGTGCATGCAATTTGCGG
                      ____________________________________________________________
consensus             AGATTGAGAGTCTATCTACAGCTCGATGAAGGACATGCATGTGGTGCATGCAATTTGCGG
 
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JMSF040P12-           GGTTCATGTGATAGGGCCTATGTGTTATTAAAAGAACTTGAAGGAGATGCACGTACAGTG
rJMSF040P12+          GGTTCATGTGATAGGGCCTATGTGTTATTAAAAGAACTTGAAGGAGATGCACGTACAGTG
                      ____________________________________________________________
consensus             GGTTCATGTGATAGGGCCTATGTGTTATTAAAAGAACTTGAAGGAGATGCACGTACAGTG
 
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JMSF040P12-           GATATTGTACGCATCCTGTTGTTGTATGCGCTGGATCCACTGGTGATTTCAGGGGGAGAG
rJMSF040P12+          GATATTGTACGCATCCTGTTGTTGTATGCGCTGGATCCACTGGTGATTTCAGGGGGAGAG
rJMSF016H17+                                          GGATCCACTGGTGATTTCAGGGGGAGNG
                      ____________________________________________________________
consensus             GATATTGTACGCATCCTGTTGTTGTATGCGCTGGATCCACTGGTGATTTCAGGGGGAGAG
 
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JMSF040P12-           AAGCC                                                       
rJMSF040P12+          AAGCCTCCTGGTAGAGAGCTTATTGATGCATCTGTAAGAAAATTGCTGTTGGAGTTGATT
rJMSF016H17+          AAGCCTCNTGGTAGAGAGCTTATTGATGCNTCTGTAAGAAAATTGCTGTTGGAGTTGANT
                      ____________________________________________________________
consensus             AAGCCTCCTGGTAGAGAGCTTATTGATGCATCTGTAAGAAAATTGCTGTTGGAGTTGATT
 
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rJMSF040P12+          GAGCTAAGCGAAACACCTATAGATCCGAAAATAACAAAACCTACTCCCAAAGCTTTTTTG
rJMSF016H17+          GAGCTAAGCGAAACACCTATAGNTCCGAAAATAACAAAACCTACTCCCAAAGCTTTTTTG
                      ____________________________________________________________
consensus             GAGCTAAGCGAAACACCTATAGATCCGAAAATAACAAAACCTACTCCCAAAGCTTTTTTG
 
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rJMSF040P12+          GAAAAGAAGCGCACTTCTGATTCCATAGTAGATGAAGGCTTGGAAAGCAATGAATTGAAA
rJMSF016H17+          GAAAAGAAGCGCACTTCTGATTCCNTAGTAGATGAAGGCTTGNAAAGCAATGNATTGAAA
                      ____________________________________________________________
consensus             GAAAAGAAGCGCACTTCTGATTCCATAGTAGATGAAGGCTTGGAAAGCAATGAATTGAAA
 
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rJMSF040P12+          AATGGACATTTGATGAGGCGTGAGATAAATACACATAGAAAGGTTGGCAAGGATGATGTT
rJMSF016H17+          AATGGACNTTTGATGAGGCGTGAGATAAATACACATAGAAAGGTTGGCAAGGATGATGTT
                      ____________________________________________________________
consensus             AATGGACATTTGATGAGGCGTGAGATAAATACACATAGAAAGGTTGGCAAGGATGATGTT
 
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rJMSF040P12+          AAAATGAAAAAAGGAGATTGGATATGCTCTGGGT                          
rJMSF016H17+          AAAATGAAAAAAGGAGATNGGATATGCTCTGGGTGCAACTTTATAAACTTCTCCAGGAAT
                      ____________________________________________________________
consensus             AAAATGAAAAAAGGAGATTGGATATGCTCTGGGTGCAACTTTATAAACTTCTCCAGGAAT
 
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rJMSF016H17+          ATGCAATGCTTGAAATGCAGAGCAGAGGCGCCAGAGAGAGTTNCTGAAAANGATATTGAA
                      ____________________________________________________________
consensus             ATGCAATGCTTGAAATGCAGAGCAGAGGCGCCAGAGAGAGTTNCTGAAAANGATATTGAA
 
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rJMSF016H17+          ATGAAAAAAGGAGATTGGAAGTGCATAACATGCACGTTTATAAATTTTGCGAGCAGAAGT
                      ____________________________________________________________
consensus             ATGAAAAAAGGAGATTGGAAGTGCATAACATGCACGTTTATAAATTTTGCGAGCAGAAGT
 
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rJMSF016H17+          AGCTGTAAAAGATGTGCAGGGCCACGCCCCAAAAGGCAGCTAAATCCCNGGGAGTGGGAG
                      ____________________________________________________________
consensus             AGCTGTAAAAGATGTGCAGGGCCACGCCCCAAAAGGCAGCTAAATCCCNGGGAGTGGGAG
 
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rJMSF016H17+          TGTCCCTCATGTGACTTCTTGAACTATAGAAACAACATGGTCTGCAAGAAATGTAATCAC
                      ____________________________________________________________
consensus             TGTCCCTCATGTGACTTCTTGAACTATAGAAACAACATGGTCTGCAAGAAATGTAATCAC
 
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rJMSF016H17+          GACCGCCCCAGAGATCTNCAGGCTAAGAAACAATATGAAGACCAGTTATGGAAGAAGCCT
                      ____________________________________________________________
consensus             GACCGCCCCAGAGATCTNCAGGCTAAGAAACAATATGAAGACCAGTTATGGAAGAAGCCT
 
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rJMSF016H17+          TCTTAAGTAGATACATTTAAGCCAATGCTTTTTCTTGTAATTAACAGACTCTTGAAATTT
                      ____________________________________________________________
consensus             TCTTAAGTAGATACATTTAAGCCAATGCTTTTTCTTGTAATTAACAGACTCTTGAAATTT