Contig 002809:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015N22Sequence499006632 (3)ref|XP_009787496.1|2e-15PREDICTED: light-inducible protein CPRF2-like [Nicotiana sylvestris]789002809 (3)ref|NP_001236299.1|6e-74G/HBF-1 protein [Glycine max] emb|CAA71687.1| G/HBF-1 [Glycine max]
JMSF038C16Sequence640006632 (3)867002809 (3)ref|XP_009610430.1|2e-68PREDICTED: light-inducible protein CPRF2 [Nicotiana tomentosiformis]
JMSF050K23Sequence680014779ref|XP_009588467.1|3e-84PREDICTED: probable protein phosphatase 2C 15 isoform X1 [Nicotiana tomentosifo774002809 (3)ref|XP_009797322.1|2e-73PREDICTED: light-inducible protein CPRF2-like, partial [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF038C16+                                                 ATTGCATGGATCCTCAAGATT
                      ____________________________________________________________
consensus                                                    ATTGCATGGATCCTCAAGATT
 
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rJMSF038C16+          CAGCCACCATGTTGCCTGACAAAGGATTAGAGGCATCCATTTCCAACCCAGGATCTGTGG
                      ____________________________________________________________
consensus             CAGCCACCATGTTGCCTGACAAAGGATTAGAGGCATCCATTTCCAACCCAGGATCTGTGG
 
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rJMSF038C16+          TCCCTCCTAAAGGATCTGGGAATGATTTTCCCAAGGGGGATGCTGAAGGGCCTGCTGGAA
                      ____________________________________________________________
consensus             TCCCTCCTAAAGGATCTGGGAATGATTTTCCCAAGGGGGATGCTGAAGGGCCTGCTGGAA
 
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rJMSF038C16+          CATCTACCTTACCTGCAGTGCAGAAGAAATCTAGTGCCAGGGCACAGTCAGCAAGTGGCT
                      ____________________________________________________________
consensus             CATCTACCTTACCTGCAGTGCAGAAGAAATCTAGTGCCAGGGCACAGTCAGCAAGTGGCT
 
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rJMSF038C16+          CAGAACCGTCTGATGATGATGAAGCTGAAGGGGAAGCAGAAACAACTCACCGAACTGATG
                      ____________________________________________________________
consensus             CAGAACCGTCTGATGATGATGAAGCTGAAGGGGAAGCAGAAACAACTCACCGAACTGATG
 
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rJMSF038C16+          CAAAACGTGTAAGGAGAGAATCAGCTAGACGTTCTAGAAGAAGAAAGCAGGTCCATCTGA
rJMSF050K23+                        AGAGAATCAGCTAGACGTTCTAGAAGAAGAAAGCAGGTCCATCTGA
rJMSF015N22+                        AGAGAATCAGCTAGACGTTCTAGAAGAAGAAAGCAGGTCCATCTGA
                      ____________________________________________________________
consensus             CAAAACGTGTAAGGAGAGAATCAGCTAGACGTTCTAGAAGAAGAAAGCAGGTCCATCTGA
 
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rJMSF038C16+          CGGACTTGGAGACACAGGTTTCTCAATTGAAAGTTGAAAACTCCTCTTTATTGAAGCGTT
rJMSF050K23+          CGGACTTGGAGACACAGGTTTCTCAATTGAAAGTTGAAAACTCCTCTTTATTGAAGCGTT
rJMSF015N22+          CGGACTTGGAGACACAGGTTTCTCAATTGAAAGTTGAAAACTCCTCTTTATTGAAGCGTT
                      ____________________________________________________________
consensus             CGGACTTGGAGACACAGGTTTCTCAATTGAAAGTTGAAAACTCCTCTTTATTGAAGCGTT
 
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rJMSF038C16+          GGACTGAAGTAAGCCAAAAACATAACGACGCAGCAGTTGACAATAGAATCTTGAAAGCGG
rJMSF050K23+          GGACTGAAGTAAGCCAAAAACATAACGACGCAGCAGTTGACAATAGAATCTTGAAAGCGG
rJMSF015N22+          GGACTGAAGTAAGCCAAAAACATAGCGACGCAGCAGTTGACAATAGAATCTTGAAAGCGG
                      ____________________________________________________________
consensus             GGACTGAAGTAAGCCAAAAACATAACGACGCAGCAGTTGACAATAGAATCTTGAAAGCGG
 
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rJMSF038C16+          ATGTTGAGACACTAAGAGCAAAGGTGAAGATGGCTGAGGAAACAGTTAAAAGAATTACTG
rJMSF050K23+          ATGTTGAGACACTAAGAGCAAAGGTGAAGATGGCTGAGGAAACAGTTAAAAGAATTACTG
rJMSF015N22+          ATGTTGAGACACTAAGAGCAAAGGTGAAGATGGCTGAGGAAACAGTTAAAAGAATTACTG
                      ____________________________________________________________
consensus             ATGTTGAGACACTAAGAGCAAAGGTGAAGATGGCTGAGGAAACAGTTAAAAGAATTACTG
 
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rJMSF038C16+          GGATGCATTCACTATTCCAAACTATGCCCGAGATACCCACATTGAGCATACCATCCTTCG
rJMSF050K23+          GGATGCATTCACTATTCCAAACTATGCCCGAGATACCCACATTGAGCATACCATCCTTCG
rJMSF015N22+          GGATGCATTCACTATTCCAAACTATGCCCGAGATACCCACATTGAGCATACCATCCTTCG
                      ____________________________________________________________
consensus             GGATGCATTCACTATTCCAAACTATGCCCGAGATACCCACATTGAGCATACCATCCTTCG
 
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rJMSF038C16+          TTGATAGCCATTCCGACACATCAGCCGATGCTACTGTACCGCTGCAAGAAGATGCTGATA
rJMSF050K23+          TTGATAGCCATTCCGACACATCAGCCGATGCTACTGTACCGCTGCAAGAAGATGCTGATA
rJMSF015N22+          TTGATAGCCATTCCGACACATCAGCCGATGCTACTGTACCGCTGCAAGAAGATGCTGATA
                      ____________________________________________________________
consensus             TTGATAGCCATTCCGACACATCAGCCGATGCTACTGTACCGCTGCAAGAAGATGCTGATA
 
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rJMSF038C16+          ACCACTACTACCAATCCCTTTGCCATGATTCTAGTATCCAGAATGGCTTGCTGGACATCC
rJMSF050K23+          ACCACTACTACCAATCCCTTTGCCATGATTCTAGTATCCAGAATGGCTTGCTGGACATCC
rJMSF015N22+          ACCACTACTACCAATCCCTTTGCCATGATTCTAGTATCCAGAATGGCTTGCTGGACATCC
                      ____________________________________________________________
consensus             ACCACTACTACCAATCCCTTTGCCATGATTCTAGTATCCAGAATGGCTTGCTGGACATCC
 
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rJMSF038C16+          CTCCGGTTGATAACGCACGACAGGATTCTGCTGCAACAGCAGGGGTGAACAATATCGGAG
rJMSF050K23+          CTCCGGTTGATAACGCACGACAGGATTCTGCTGCAACAGCAGGGGTGAACAATATCGGAG
rJMSF015N22+          CTCCGGTTGATAACGCACGACAGGATTCTGCTGCAACAGCAGGGGTGAACAATATCGGAG
                      ____________________________________________________________
consensus             CTCCGGTTGATAACGCACGACAGGATTCTGCTGCAACAGCAGGGGTGAACAATATCGGAG
 
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rJMSF038C16+          GGATGGCTTCAATGCTGAGAGTGGCCAGCTTGGAAAACCTGCAGAATCGCATCCGCAGAG
rJMSF050K23+          GGATGGCTTCAATGCTGAGAGTGGCCAGCTTGGAAAACCTGCAGAATCGCATCCGCAGAG
rJMSF015N22+          GGATGGCTTCAATGCTGAGAGTGGCCAGCTTGGAAAACCTGCAGAATCGCATCCGCAGAG
                      ____________________________________________________________
consensus             GGATGGCTTCAATGCTGAGAGTGGCCAGCTTGGAAAACCTGCAGAATCGCATCCGCAGAG
 
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rJMSF038C16+          AAGCAGGAGGTTCATGTAGAACTCAGTGCAGGATAAGCAAATGATGTGCATAAAGGGACC
rJMSF050K23+          AAGCAGGAGGTTCATGTAGAACTCAGTGCAGGATAAGCAAATGATGTGCATAAAGGGACC
rJMSF015N22+          AAGCAGGAGGTTCATGTAGAACTCAGTGCAGGATAAGCAAATGATGTGCATAAAGGGACC
                      ____________________________________________________________
consensus             AAGCAGGAGGTTCATGTAGAACTCAGTGCAGGATAAGCAAATGATGTGCATAAAGGGACC
 
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rJMSF050K23+          TA--ATAAATCTAAACTTTGTGCTAAATCCACCAAAAAACTATTTTGTGCCATGGTTCAT
rJMSF015N22+          TAATATAAATCTAAACTTTGTGCTAAATCCACCAAAAAACTATTTTGTGCCATGGTTCAT
                      ____________________________________________________________
consensus             TAATATAAATCTAAACTTTGTGCTAAATCCACCAAAAAACTATTTTGTGCCATGGTTCAT
 
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rJMSF050K23+          GCTAGAAAATGGTTTTGTTTTCAGTGATGGAATGATTCATTTTGCGTGAA          
rJMSF015N22+          GCTAGAAAATGGTTTTGTTTTCAGTGATGGAATGATTCATTTTGCGTGAATTCACTGGAT
                      ____________________________________________________________
consensus             GCTAGAAAATGGTTTTGTTTTCAGTGATGGAATGATTCATTTTGCGTGAATTCACTGGAT