Contig 002807:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001L22Sequence289004910 (2)gb|KJB51034.1|4e-25hypothetical protein B456_008G198300 [Gossypium raimondii]739002807 (3)ref|XP_009625768.1|2e-72PREDICTED: nudix hydrolase 3 [Nicotiana tomentosiformis]
JMSF013F05Sequence587016726716002807 (3)ref|XP_009625768.1|6e-63PREDICTED: nudix hydrolase 3 [Nicotiana tomentosiformis]
JMSF015K15Sequence471004910 (2)gb|KJB51034.1|6e-81hypothetical protein B456_008G198300 [Gossypium raimondii]759002807 (3)ref|XP_009625768.1|2e-65PREDICTED: nudix hydrolase 3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF013F05+                                               CTGCAAGAGCTCCACTCAGCGCT
                      ____________________________________________________________
consensus                                                  CTGCAAGAGCTCCACTCAGCGCT
 
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rJMSF013F05+          AGAAGAAACTAAAGCCGACATTGTTGGACTGTGGGCCCTAAAGTTTCTAATTGGCGAGGG
                      ____________________________________________________________
consensus             AGAAGAAACTAAAGCCGACATTGTTGGACTGTGGGCCCTAAAGTTTCTAATTGGCGAGGG
 
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rJMSF013F05+          TTTGCTTCCGAAGAGCCTAGTGAGATCGATGTATGTCTCTTTTCTTGCTGGATGTTTTCG
                      ____________________________________________________________
consensus             TTTGCTTCCGAAGAGCCTAGTGAGATCGATGTATGTCTCTTTTCTTGCTGGATGTTTTCG
 
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rJMSF013F05+          CTCTGTGCGCTTTGGATTAGAGGAAGCTCATGGCAAAGGGCAGGCGCTGCAGTTCAATTA
                      ____________________________________________________________
consensus             CTCTGTGCGCTTTGGATTAGAGGAAGCTCATGGCAAAGGGCAGGCGCTGCAGTTCAATTA
 
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rJMSF013F05+          TATGTTCGAGAAAATTGCCTTTGTCTTACAACCTGATGAGACCTTCTCCATCGACTTCGA
                      ____________________________________________________________
consensus             TATGTTCGAGAAAATTGCCTTTGTCTTACAACCTGATGAGACCTTCTCCATCGACTTCGA
 
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rJMSF013F05+          TAAGGCAAGATTTTGTGATCTGTTAGGATTAAACGTAACCATTCGAAGCAAAATGTTTAT
                      ____________________________________________________________
consensus             TAAGGCAAGATTTTGTGATCTGTTAGGATTAAACGTAACCATTCGAAGCAAAATGTTTAT
 
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rJMSF013F05+          TTTTCCTATTGTGAAAGGTCGAGGATGTTGTCGAGAGCTTGAGTAGGGAAATCCTTACAG
rJMSF001L22+                        AAGGTCGAGGATGTTGTCGAGAGCTTGAGTAGGGAAATCCTTACAG
rJMSF015K15+                        AAGGTCGAGGATGTTGTCGAGAGCTTGAGTAGGGAAATCCTTACAG
                      ____________________________________________________________
consensus             TTTTCCTATTGTGAAAGGTCGAGGATGTTGTCGAGAGCTTGAGTAGGGAAATCCTTACAG
 
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rJMSF013F05+          TACAAGCAAGAGGCGATAAAGATGGTGCCCAAATGCTTCTTAAGAAATATGGCGTTATGA
rJMSF001L22+          TACAAGCGAGAGGCGATAAAGATGGTGCCCAAATGCTTCTTAAGAAATATGGCGTTATGA
rJMSF015K15+          TACAAGCGAGAGGCGATAAAGATGGTGCCCAAATGCTTCTTAAGAAATATGGCGTTATGA
                      ____________________________________________________________
consensus             TACAAGCGAGAGGCGATAAAGATGGTGCCCAAATGCTTCTTAAGAAATATGGCGTTATGA
 
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rJMSF013F05+          CTCCTCCACTGCAATGTGCACTCCAAAAACTGGAAACGATTCAGGTTCCGGTGGACATAG
rJMSF001L22+          CTCCTCCACTACAATGTGCACTCCAAAAACTGGAAACAATTCAGGTTCCGGTGGACATAG
rJMSF015K15+          CTCCTCCACTACAATGTGCACTCCAAAAACTGGAAACAATTCAGGTTCCGGTGGACATAG
                      ____________________________________________________________
consensus             CTCCTCCACTACAATGTGCACTCCAAAAACTGGAAACAATTCAGGTTCCGGTGGACATAG
 
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rJMSF013F05+          TTCCTGAATTTCCCGTTGCTGATCAAATTTTACGTGAAAGCCATTGAGGACTTGACATTA
rJMSF001L22+          TTCCTGAATTTCCCATTGCTGATCAAATTTTACGTGAAAGCCATTGAGGACTTGACATTA
rJMSF015K15+          TTCCTGAATTTCCCATTGCTGATCAAATTTTACGTGAAAGCCATTGAGGACTTGACATTA
                      ____________________________________________________________
consensus             TTCCTGAATTTCCCATTGCTGATCAAATTTTACGTGAAAGCCATTGAGGACTTGACATTA
 
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rJMSF013F05+          TAAACTGTTCTTGAAGGAGGAGCACAGGCAGAGAGAGAGAGAGATCATTAACTATGTGTA
rJMSF001L22+          TAAACTGTTCTTGAAGGAGGAGCACAGGCA------GAGAGAGAACATTAACTATGTGTA
rJMSF015K15+          TAAACTGTTCTTGAAGGAGGAGCACAGGCA------GAGAGAGAACATTAACTATGTGTA
                      ____________________________________________________________
consensus             TAAACTGTTCTTGAAGGAGGAGCACAGGCA------GAGAGAGAACATTAACTATGTGTA
 
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rJMSF013F05+          AGATAAAAATCATAAAATGATGGGGTTTTTATGCTGTTGTGAACAGAAGTTGCATCAATA
rJMSF001L22+          AGA---------TAAAATGATGGGGTTTTTATGCTGTTGTGAACAGAAGTTGCATCAATA
rJMSF015K15+          AGA---------TAAAATGATGGGGTTTTTATGCTGTTGTGAACAGAAGTTGCATCAATA
                      ____________________________________________________________
consensus             AGA---------TAAAATGATGGGGTTTTTATGCTGTTGTGAACAGAAGTTGCATCAATA
 
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rJMSF013F05+          ATGTGGGATTTGTATGTTTAGAACTGAAAACA                            
rJMSF001L22+          ATGTGGGATTTGTATGTTTAGAACTGAAAACAGAAGCTAAGATCTTGTGGTCTAATGGCA
rJMSF015K15+          ATGTGGGATTTGTATGTTTAGAACTGAAAACAGAAGCTAAGATCTTGTGGTCTAATGGCA
                      ____________________________________________________________
consensus             ATGTGGGATTTGTATGTTTAGAACTGAAAACAGAAGCTAAGATCTTGTGGTCTAATGGCA
 
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rJMSF001L22+          CTAAGGTTGCACTCTCATATGGGTTGTTGTGAGTTCGAGCCTCAGTGGAGGCGACATTGA
rJMSF015K15+          CTAAGGTTGCACTCTCATATGGGTTGTTGTGAGTTCGAGCCTCAGTGGAGGCGACATTGA
                      ____________________________________________________________
consensus             CTAAGGTTGCACTCTCATATGGGTTGTTGTGAGTTCGAGCCTCAGTGGAGGCGACATTGA
 
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rJMSF001L22+          CTCTTTGTGTTTCAGTAGGTTAAGAAAGTAGTTATGCACAGATACTACAATGTGTTACTT
rJMSF015K15+          CTCTTTGTGTTTCAGTAGGTTAAGAAAGTAGTTATGCACAGATACTACAATGTGTTACTT
                      ____________________________________________________________
consensus             CTCTTTGTGTTTCAGTAGGTTAAGAAAGTAGTTATGCACAGATACTACAATGTGTTACTT
 
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rJMSF001L22+          TT                                                          
rJMSF015K15+          TTTGTGGTTTGAGCCGGCGGTCAGCTACAAGCTTGATTGAATCGAACTTGTAATTTTCCG
                      ____________________________________________________________
consensus             TTTGTGGTTTGAGCCGGCGGTCAGCTACAAGCTTGATTGAATCGAACTTGTAATTTTCCG