Contig 002805:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014O11Sequence443002805 (2)ref|XP_010313696.1|1e-57PREDICTED: zinc finger Ran-binding domain-containing protein 2-like isoform X1 689002805 (2)ref|XP_010313698.1|2e-68PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Solan

Alignment

This contig is upended


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rJMSF014O11-                                         CAATATAGTTAGAAACCATTCCTAGTGCA
                      ____________________________________________________________
consensus                                            CAATATAGTTAGAAACCATTCCTAGTGCA
 
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rJMSF014O11-          AATTGGTCAAAGATTATTTGATCAACTGAGAAAAGACAAGAGATACATGAGAAAATAGAA
                      ____________________________________________________________
consensus             AATTGGTCAAAGATTATTTGATCAACTGAGAAAAGACAAGAGATACATGAGAAAATAGAA
 
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rJMSF014O11-          AAGAAAAGAAATGATTTTGAAGGTTTTTGGATTCTTAGTAATTCTAGGATATTATGCCTC
                      ____________________________________________________________
consensus             AAGAAAAGAAATGATTTTGAAGGTTTTTGGATTCTTAGTAATTCTAGGATATTATGCCTC
 
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rJMSF014O11-          TCTTCCTTAATTACTTTCTTTAGAGATCATCTCCCGAATCACATGGATGATGGCTCACTG
                      ____________________________________________________________
consensus             TCTTCCTTAATTACTTTCTTTAGAGATCATCTCCCGAATCACATGGATGATGGCTCACTG
 
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JMSF014O11+                                                TGCTGGCATAATTGTGCCAACCA
rJMSF014O11-          AAATCCCGAGGATTCCTGCATTTATAACATTCCGTTCTGCTGGCATAATTGTGCCAACCA
                      ____________________________________________________________
consensus             AAATCCCGAGGATTCCTGCATTTATAACATTCCGTTCTGCTGGCATAATTGTGCCAACCA
 
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JMSF014O11+           CATCCAAGTCTGTTGCAAATCCAGTCACCTTTCTTATATCCCGGAGGGACACTTGCATCA
rJMSF014O11-          CATCCAAGTCTGTTGCAAATCCAGTCACCTTTCTTATATCCCGGAGGGACACTTGCATCA
                      ____________________________________________________________
consensus             CATCCAAGTCTGTTGCAAATCCAGTCACCTTTCTTATATCCCGGAGGGACACTTGCATCA
 
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JMSF014O11+           TATCCATAACTTCCCGGTGTTATCATTCCAGCCCCAAGGCCATAATAGCCAATTTTCGAG
rJMSF014O11-          TATCCATAACTTCCCGGTGTTATCATTCCAGCCCCAAGGCCATAATAGCCAATTTTCGAG
                      ____________________________________________________________
consensus             TATCCATAACTTCCCGGTGTTATCATTCCAGCCCCAAGGCCATAATAGCCAATTTTCGAG
 
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JMSF014O11+           GCTCCACATCTGTAGCAGTTTGTTCGGCTTGCATAGTTGTGAGCACAACAGGCATTGCAG
rJMSF014O11-          GCTCCACATCTGTAGCAGTTTGTTCGGCTTGCATAGTTGTGAGCACAACAGGCATTGCAG
                      ____________________________________________________________
consensus             GCTCCACATCTGTAGCAGTTTGTTCGGCTTGCATAGTTGTGAGCACAACAGGCATTGCAG
 
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JMSF014O11+           TACCAGTCCCCGGGCAAGACCTCTGATTTATTACGCCCATATAAAGCCGCATCAGCTTCA
rJMSF014O11-          TACCAGTCCCCGGGCAAGACCTCTGATTTATTACGCCCATATAAAGCCGCATCAGCTTCA
                      ____________________________________________________________
consensus             TACCAGTCCCCGGGCAAGACCTCTGATTTATTACGCCCATATAAAGCCGCATCAGCTTCA
 
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JMSF014O11+           GAAGCATACTTAGGACAATTGCATCGTTGGCATGCATCTCGTTTCTTAAAATTTATGTGT
rJMSF014O11-          GAAGCATACTTAGGACAATTGCATCGTTGGCATGCATCTCGTTTCTTAAAATTTATGTGT
                      ____________________________________________________________
consensus             GAAGCATACTTAGGACAATTGCATCGTTGGCATGCATCTCGTTTCTTAAAATTTATGTGT
 
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JMSF014O11+           TGACATGCGGCGCACATCCAATCTCCTTCTTGGTTCATTCACCGTCTTGGTTTCAGGACA
rJMSF014O11-          TGACATGCGGCGCACATCCAATCTCCTTCTTGGTTCATTCACCGTCTTGGTTTCAGGACA
                      ____________________________________________________________
consensus             TGACATGCGGCGCACATCCAATCTCCTTCTTGGTTCATTCACCGTCTTGGTTTCAGGACA
 
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JMSF014O11+           AGGTGCAGAGGACTGGCCTTACACAGCTTTAAACAGAAGAATTGCTTGCTGAAACTGGTC
rJMSF014O11-          AGGTGCAGAGGACTGGCCTTACACAGCTTTAAACAGAAGAATTGCTTGCTGAAACTGGTC
                      ____________________________________________________________
consensus             AGGTGCAGAGGACTGGCCTTACACAGCTTTAAACAGAAGAATTGCTTGCTGAAACTGGTC