Contig 002790:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019K09Sequence557010618 (3)ref|XP_009625421.1|5e-41PREDICTED: novel plant SNARE 13 [Nicotiana tomentosiformis]757002790 (3)ref|XP_004252947.1|4e-105PREDICTED: novel plant SNARE 13-like [Solanum lycopersicum]
JMSF011K12Sequence360010618 (3)723002790 (3)ref|XP_004252947.1|8e-103PREDICTED: novel plant SNARE 13-like [Solanum lycopersicum]
JMSF011N02Sequence308010618 (3)797002790 (3)ref|XP_004252947.1|5e-55PREDICTED: novel plant SNARE 13-like [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF011K12+ ACTTAATGAT
rJMFF019K09+ AGCTCAACAAGCAACTTAATGAT
                      ____________________________________________________________
consensus AGCTCAACAAGCAACTTAATGAT
 
. : . : . : . : . : . :
rJMSF011K12+ GAGAAGCAATCGATGATTAAAGAACTAAACTCATATGTTGCCTTGAGGAAAACGTATATG
rJMFF019K09+ GAGAAGCAATCGATGATTAAAGAACTAAACTCATATGTTGCCTTGAGGAAAACGTATATG
                      ____________________________________________________________
consensus GAGAAGCAATCGATGATTAAAGAACTAAACTCATATGTTGCCTTGAGGAAAACGTATATG
 
. : . : . : . : . : . :
rJMSF011K12+ AGTACTCTTGGAAACAAGAAGCTTGAACTCTTCGATATGGGAGCAGGTGGTAGTGAACCA
rJMFF019K09+ AGTACTCTTGGAAACAAGAAGCTTGAACTCTTCGATATGGGAGCAGGTGGTAGTGAACCA
rJMSF011N02+ TATGGGAGCAGGTGGTAGTGAACCA
                      ____________________________________________________________
consensus AGTACTCTTGGAAACAAGAAGCTTGAACTCTTCGATATGGGAGCAGGTGGTAGTGAACCA
 
. : . : . : . : . : . :
rJMSF011K12+ ACTGCAGATGAGAATGTTCAACTGGCATCAGAAATGTCCAATCAGGAGCTAATTAATGCG
rJMFF019K09+ ACTGCAGATGAGAATGTTCAACTGGCATCAGAAATGTCCAATCAGGAGCTAATTAATGCG
rJMSF011N02+ ACTGCAGATGAGAATGTTCAACTGGCATCAGAAATGTCCAATCAGGAGCTAATTAATGCG
                      ____________________________________________________________
consensus ACTGCAGATGAGAATGTTCAACTGGCATCAGAAATGTCCAATCAGGAGCTAATTAATGCG
 
. : . : . : . : . : . :
rJMSF011K12+ GGAATGAAGAAAATGGATGAAACTGACCAGGCCATTGAACGCTCCAAACAGGTTGTTCAC
rJMFF019K09+ GGAATGAAGAAAATGGATGAAACTGACCAGGCCATTGAACGCTCCAAACAGGTTGTTCAC
rJMSF011N02+ GGAATGAAGAAAATGGATGAAACTGACCAGGCCATTGAACGCTCCAAACAGGTTGTTCAC
                      ____________________________________________________________
consensus GGAATGAAGAAAATGGATGAAACTGACCAGGCCATTGAACGCTCCAAACAGGTTGTTCAC
 
. : . : . : . : . : . :
rJMSF011K12+ CAAACAATTGAAGTAGGAACACAAACTGCTACTACCTTGAAGGGCCAAACTGAACAAATG
rJMFF019K09+ CAAACAATTGAAGTAGGAACACAAACTGCTACTACCTTGAAGGGCCAAACTGAACAAATG
rJMSF011N02+ CAAACAATTGAAGTAGGAACACAAACTGCTACTACCTTGAAGGGCCAAACTGAACAAATG
                      ____________________________________________________________
consensus CAAACAATTGAAGTAGGAACACAAACTGCTACTACCTTGAAGGGCCAAACTGAACAAATG
 
. : . : . : . : . : . :
rJMSF011K12+ GGCCGCATTGTTAATGAGCTCGACACAATCCAATTCAGCATAAAAAAAGCAACCCAGCTC
rJMFF019K09+ GGCCGCATTGTTAATGAGCTCGACACAATCCAATTCAGCATAAAAAAAGCAACCCAGCTC
rJMSF011N02+ GGCCGCATTGTTAATGAGCTCGACACAATCCAATTCAGCATAAAAAAAGCAACCCAGCTC
                      ____________________________________________________________
consensus GGCCGCATTGTTAATGAGCTCGACACAATCCAATTCAGCATAAAAAAAGCAACCCAGCTC
 
. : . : . : . : . : . :
rJMSF011K12+ GTGAAAGAGATCGGTAGGCAGGTGGCTACTGATAAATGCATAATGCTTTTCCTTTTCCTC
rJMFF019K09+ GTGAAAGAGATCGGTAGGCAGGTGGCTACTGATAAATGCATAATGCTTTTCCTTTTCCTC
rJMSF011N02+ GTGAAAGAGATC--------GGTGGCTACTGATAAATGCATAATGCTTTTCCTTTTCCTC
                      ____________________________________________________________
consensus GTGAAAGAGATCGGTAGGCAGGTGGCTACTGATAAATGCATAATGCTTTTCCTTTTCCTC
 
. : . : . : . : . : . :
rJMSF011K12+ ATTGTATGCGGTGTAATTGCAATAATTGTCGTGAAGATTGTGCATCCCAACAACAAAGAC
rJMFF019K09+ ATTGTATGCGGTGTAATTGCAATAATTGTCGTGAAGATTGTGCATCCCAACAACAAAGAC
rJMSF011N02+ ATTGTATGCGGTGTAATTGCAATAATTGTCGTGAAGATTGTGCATCCCAACAACAAAGAC
                      ____________________________________________________________
consensus ATTGTATGCGGTGTAATTGCAATAATTGTCGTGAAGATTGTGCATCCCAACAACAAAGAC
 
. : . : . : . : . : . :
rJMSF011K12+ ATAAGGGACATCCCGGGTCTAGCCCCGCCAGCTCCCGCGAGGAGACTGTTATATGTGAAG
rJMFF019K09+ ATAAGGGACATCCCGGGTCTAGCCCCGCCAGCTCCCGCGAGGAGACTGTTATATGTGAAG
rJMSF011N02+ ATAAGGGACATCCCGGGTCTAGCCCCGCCAGCTCCCGCGAGGAGACTGTTATATGTGAAG
                      ____________________________________________________________
consensus ATAAGGGACATCCCGGGTCTAGCCCCGCCAGCTCCCGCGAGGAGACTGTTATATGTGAAG
 
. : . : . : . : . : . :
rJMSF011K12+ CCAGGTCAAGATTTCGAGTAATTTCATTGGACAGAGAGATTGGGGGGGAAGGGACATTTG
rJMFF019K09+ CCAGGTCAAGATTTCGAGTAATTTCATTGGACAGAGAGATTGGGGGGGAAGGGACATTTG
rJMSF011N02+ CCAGGTCAAGATTTCGAGTAATTTCATTGGACAGAGAGATTGGGGGGGAAGGGACATTTG
                      ____________________________________________________________
consensus CCAGGTCAAGATTTCGAGTAATTTCATTGGACAGAGAGATTGGGGGGGAAGGGACATTTG
 
. : . : . : . : . : . :
rJMSF011K12+ TGTAACTTTGCAGACAATTTGTTGTATCTCTAGAGAGAAGCTGTGTTTGTTTGTTTGTTT
rJMFF019K09+ TGTAACTTTGCAGACAATTTGTTGTATCTCTAGAGAGAAGCTGTGTTTGTTTGTTTGTTT
rJMSF011N02+ TGTAACTTTGCAGACAATTTGTTGTATCTCTAGAGAGAAGCTGTGTTTGTTTGTTTGTTT
                      ____________________________________________________________
consensus TGTAACTTTGCAGACAATTTGTTGTATCTCTAGAGAGAAGCTGTGTTTGTTTGTTTGTTT
 
. : . : . : . : . : . :
rJMSF011K12+ GTATGGGTCCTTAGTCCTTACAC
rJMFF019K09+ GTATGGGTCCTTAGTCCTTACACATGAGTGTGCATATGGTTTGTGTAAATCACACGTCGG
rJMSF011N02+ GTATGGGTCCTTAGTCCTTACACATGAGTGTGCATATGGTTTGTGTAAATCACACGTCGG
                      ____________________________________________________________
consensus GTATGGGTCCTTAGTCCTTACACATGAGTGTGCATATGGTTTGTGTAAATCACACGTCGG
 
. : . : . : . : . : . :
rJMFF019K09+ AGTTGTCATTACGT
rJMSF011N02+ AGTTGTCATTACGTTAAAGCATTTTGGCTTTTGGTTCGGATGCCAGCTTACGCTTTGTTG
                      ____________________________________________________________
consensus AGTTGTCATTACGTTAAAGCATTTTGGCTTTTGGTTCGGATGCCAGCTTACGCTTTGTTG
 
. : . : . : . : . : . :
rJMSF011N02+ ACTACTGAGAGTGCATAGTTATATTATTGCGAAAAAAGAAAGAAGAAAAAAACAATATAT
                      ____________________________________________________________
consensus ACTACTGAGAGTGCATAGTTATATTATTGCGAAAAAAGAAAGAAGAAAAAAACAATATAT
 
. : . : . : . : . : . :
rJMSF011N02+ TCATTTGTGCTGGCTATATAGTACCATGTAGCCATTGTAGTATTGTTTATAGAATAGAGA
                      ____________________________________________________________
consensus TCATTTGTGCTGGCTATATAGTACCATGTAGCCATTGTAGTATTGTTTATAGAATAGAGA