Contig 002790:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019K09Sequence557010618 (3)ref|XP_009625421.1|5e-41PREDICTED: novel plant SNARE 13 [Nicotiana tomentosiformis]757002790 (3)ref|XP_004252947.1|4e-105PREDICTED: novel plant SNARE 13-like [Solanum lycopersicum]
JMSF011K12Sequence360010618 (3)723002790 (3)ref|XP_004252947.1|8e-103PREDICTED: novel plant SNARE 13-like [Solanum lycopersicum]
JMSF011N02Sequence308010618 (3)797002790 (3)ref|XP_004252947.1|5e-55PREDICTED: novel plant SNARE 13-like [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF011K12+                                                            ACTTAATGAT
rJMFF019K09+                                               AGCTCAACAAGCAACTTAATGAT
                      ____________________________________________________________
consensus                                                  AGCTCAACAAGCAACTTAATGAT
 
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rJMSF011K12+          GAGAAGCAATCGATGATTAAAGAACTAAACTCATATGTTGCCTTGAGGAAAACGTATATG
rJMFF019K09+          GAGAAGCAATCGATGATTAAAGAACTAAACTCATATGTTGCCTTGAGGAAAACGTATATG
                      ____________________________________________________________
consensus             GAGAAGCAATCGATGATTAAAGAACTAAACTCATATGTTGCCTTGAGGAAAACGTATATG
 
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rJMSF011K12+          AGTACTCTTGGAAACAAGAAGCTTGAACTCTTCGATATGGGAGCAGGTGGTAGTGAACCA
rJMFF019K09+          AGTACTCTTGGAAACAAGAAGCTTGAACTCTTCGATATGGGAGCAGGTGGTAGTGAACCA
rJMSF011N02+                                             TATGGGAGCAGGTGGTAGTGAACCA
                      ____________________________________________________________
consensus             AGTACTCTTGGAAACAAGAAGCTTGAACTCTTCGATATGGGAGCAGGTGGTAGTGAACCA
 
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rJMSF011K12+          ACTGCAGATGAGAATGTTCAACTGGCATCAGAAATGTCCAATCAGGAGCTAATTAATGCG
rJMFF019K09+          ACTGCAGATGAGAATGTTCAACTGGCATCAGAAATGTCCAATCAGGAGCTAATTAATGCG
rJMSF011N02+          ACTGCAGATGAGAATGTTCAACTGGCATCAGAAATGTCCAATCAGGAGCTAATTAATGCG
                      ____________________________________________________________
consensus             ACTGCAGATGAGAATGTTCAACTGGCATCAGAAATGTCCAATCAGGAGCTAATTAATGCG
 
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rJMSF011K12+          GGAATGAAGAAAATGGATGAAACTGACCAGGCCATTGAACGCTCCAAACAGGTTGTTCAC
rJMFF019K09+          GGAATGAAGAAAATGGATGAAACTGACCAGGCCATTGAACGCTCCAAACAGGTTGTTCAC
rJMSF011N02+          GGAATGAAGAAAATGGATGAAACTGACCAGGCCATTGAACGCTCCAAACAGGTTGTTCAC
                      ____________________________________________________________
consensus             GGAATGAAGAAAATGGATGAAACTGACCAGGCCATTGAACGCTCCAAACAGGTTGTTCAC
 
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rJMSF011K12+          CAAACAATTGAAGTAGGAACACAAACTGCTACTACCTTGAAGGGCCAAACTGAACAAATG
rJMFF019K09+          CAAACAATTGAAGTAGGAACACAAACTGCTACTACCTTGAAGGGCCAAACTGAACAAATG
rJMSF011N02+          CAAACAATTGAAGTAGGAACACAAACTGCTACTACCTTGAAGGGCCAAACTGAACAAATG
                      ____________________________________________________________
consensus             CAAACAATTGAAGTAGGAACACAAACTGCTACTACCTTGAAGGGCCAAACTGAACAAATG
 
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rJMSF011K12+          GGCCGCATTGTTAATGAGCTCGACACAATCCAATTCAGCATAAAAAAAGCAACCCAGCTC
rJMFF019K09+          GGCCGCATTGTTAATGAGCTCGACACAATCCAATTCAGCATAAAAAAAGCAACCCAGCTC
rJMSF011N02+          GGCCGCATTGTTAATGAGCTCGACACAATCCAATTCAGCATAAAAAAAGCAACCCAGCTC
                      ____________________________________________________________
consensus             GGCCGCATTGTTAATGAGCTCGACACAATCCAATTCAGCATAAAAAAAGCAACCCAGCTC
 
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rJMSF011K12+          GTGAAAGAGATCGGTAGGCAGGTGGCTACTGATAAATGCATAATGCTTTTCCTTTTCCTC
rJMFF019K09+          GTGAAAGAGATCGGTAGGCAGGTGGCTACTGATAAATGCATAATGCTTTTCCTTTTCCTC
rJMSF011N02+          GTGAAAGAGATC--------GGTGGCTACTGATAAATGCATAATGCTTTTCCTTTTCCTC
                      ____________________________________________________________
consensus             GTGAAAGAGATCGGTAGGCAGGTGGCTACTGATAAATGCATAATGCTTTTCCTTTTCCTC
 
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rJMSF011K12+          ATTGTATGCGGTGTAATTGCAATAATTGTCGTGAAGATTGTGCATCCCAACAACAAAGAC
rJMFF019K09+          ATTGTATGCGGTGTAATTGCAATAATTGTCGTGAAGATTGTGCATCCCAACAACAAAGAC
rJMSF011N02+          ATTGTATGCGGTGTAATTGCAATAATTGTCGTGAAGATTGTGCATCCCAACAACAAAGAC
                      ____________________________________________________________
consensus             ATTGTATGCGGTGTAATTGCAATAATTGTCGTGAAGATTGTGCATCCCAACAACAAAGAC
 
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rJMSF011K12+          ATAAGGGACATCCCGGGTCTAGCCCCGCCAGCTCCCGCGAGGAGACTGTTATATGTGAAG
rJMFF019K09+          ATAAGGGACATCCCGGGTCTAGCCCCGCCAGCTCCCGCGAGGAGACTGTTATATGTGAAG
rJMSF011N02+          ATAAGGGACATCCCGGGTCTAGCCCCGCCAGCTCCCGCGAGGAGACTGTTATATGTGAAG
                      ____________________________________________________________
consensus             ATAAGGGACATCCCGGGTCTAGCCCCGCCAGCTCCCGCGAGGAGACTGTTATATGTGAAG
 
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rJMSF011K12+          CCAGGTCAAGATTTCGAGTAATTTCATTGGACAGAGAGATTGGGGGGGAAGGGACATTTG
rJMFF019K09+          CCAGGTCAAGATTTCGAGTAATTTCATTGGACAGAGAGATTGGGGGGGAAGGGACATTTG
rJMSF011N02+          CCAGGTCAAGATTTCGAGTAATTTCATTGGACAGAGAGATTGGGGGGGAAGGGACATTTG
                      ____________________________________________________________
consensus             CCAGGTCAAGATTTCGAGTAATTTCATTGGACAGAGAGATTGGGGGGGAAGGGACATTTG
 
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rJMSF011K12+          TGTAACTTTGCAGACAATTTGTTGTATCTCTAGAGAGAAGCTGTGTTTGTTTGTTTGTTT
rJMFF019K09+          TGTAACTTTGCAGACAATTTGTTGTATCTCTAGAGAGAAGCTGTGTTTGTTTGTTTGTTT
rJMSF011N02+          TGTAACTTTGCAGACAATTTGTTGTATCTCTAGAGAGAAGCTGTGTTTGTTTGTTTGTTT
                      ____________________________________________________________
consensus             TGTAACTTTGCAGACAATTTGTTGTATCTCTAGAGAGAAGCTGTGTTTGTTTGTTTGTTT
 
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rJMSF011K12+          GTATGGGTCCTTAGTCCTTACAC                                     
rJMFF019K09+          GTATGGGTCCTTAGTCCTTACACATGAGTGTGCATATGGTTTGTGTAAATCACACGTCGG
rJMSF011N02+          GTATGGGTCCTTAGTCCTTACACATGAGTGTGCATATGGTTTGTGTAAATCACACGTCGG
                      ____________________________________________________________
consensus             GTATGGGTCCTTAGTCCTTACACATGAGTGTGCATATGGTTTGTGTAAATCACACGTCGG
 
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rJMFF019K09+          AGTTGTCATTACGT                                              
rJMSF011N02+          AGTTGTCATTACGTTAAAGCATTTTGGCTTTTGGTTCGGATGCCAGCTTACGCTTTGTTG
                      ____________________________________________________________
consensus             AGTTGTCATTACGTTAAAGCATTTTGGCTTTTGGTTCGGATGCCAGCTTACGCTTTGTTG
 
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rJMSF011N02+          ACTACTGAGAGTGCATAGTTATATTATTGCGAAAAAAGAAAGAAGAAAAAAACAATATAT
                      ____________________________________________________________
consensus             ACTACTGAGAGTGCATAGTTATATTATTGCGAAAAAAGAAAGAAGAAAAAAACAATATAT
 
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rJMSF011N02+          TCATTTGTGCTGGCTATATAGTACCATGTAGCCATTGTAGTATTGTTTATAGAATAGAGA
                      ____________________________________________________________
consensus             TCATTTGTGCTGGCTATATAGTACCATGTAGCCATTGTAGTATTGTTTATAGAATAGAGA