| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN005G03 | Sequence | 602 | 002784 (3) | ref|XP_009799261.1| | 2e-75 | PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Nicotian | |||||
| JMFN016E01 | Sequence | 626 | 002784 (3) | ref|XP_009799261.1| | 6e-77 | PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Nicotian | |||||
| JMSF010O05 | Sequence | 339 | 019929 | ref|XP_011085210.1| | 5e-16 | PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Ses | 751 | 002784 (3) | ref|XP_006353023.1| | 4e-82 | PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Sol |
This contig is upended
. : . : . : . : . : . :
JMFN016E01+ TAGGTA
____________________________________________________________
consensus TAGGTA
. : . : . : . : . : . :
JMFN005G03+ ACTTGGAAGCACGGTTTAGCTTAGCTACAGAGCCTAC
JMFN016E01+ ATGTAAAGAAAGAAATTGTTAGTACTTGGAAGCACGGTTTAGCTTAGCTACAGAGCCTAC
rJMSF010O05- AGCACGGTTTAGCTTAGCTACAGAGCCTAC
____________________________________________________________
consensus ATGTAAAGAAAGAAATTGTTAGTACTTGGAAGCACGGTTTAGCTTAGCTACAGAGCCTAC
. : . : . : . : . : . :
JMFN005G03+ AGTAACAGTGTAACACACATAAAGTTTGAATAGAATAGATTGTCAAAAGCCAGGAATTTC
JMFN016E01+ AGTAACAGTGTAACACACATAAAGTTTGAATAGAATAGATTGTCAAAAGCCAGGAATTTC
rJMSF010O05- AGTAACAGTGTAACACACATAAAGTTTGAATAGAATAGATTGTCAAAAGCCAGGAATTTC
____________________________________________________________
consensus AGTAACAGTGTAACACACATAAAGTTTGAATAGAATAGATTGTCAAAAGCCAGGAATTTC
. : . : . : . : . : . :
JMFN005G03+ ACCGGGCAAAGGAGCCAACTCATTATTGCTAAACCTTTCCTCATCATAGAAGCCTGCGCG
JMFN016E01+ ACCGGGCAAAGGAGCCAACTCATTATTGCTAAACCTTTCCTCATCATAGAAGCCTGCGCG
rJMSF010O05- ACCGGGCAAAGGAGCCAACTCATTATTGCTAAACCTTTCCTCATCATAGAAGCCTGCGCG
____________________________________________________________
consensus ACCGGGCAAAGGAGCCAACTCATTATTGCTAAACCTTTCCTCATCATAGAAGCCTGCGCG
. : . : . : . : . : . :
JMFN005G03+ AACAACCCTTCCCCCAAAGAACCGTCCTTCGAGTTCAATCAGAGCTTTGGTTGCGTGCTC
JMFN016E01+ AACAACCCTTCCCCCAAAGAACCGTCCTTCGAGTTCAATCAGAGCTTTGGTTGCGTGCTC
rJMSF010O05- AACAACCCTTCCCCCAAAGAACCGTCCTTCGAGTTCAATCAGAGCTTTGGTTGCGTGCTC
____________________________________________________________
consensus AACAACCCTTCCCCCAAAGAACCGTCCTTCGAGTTCAATCAGAGCTTTGGTTGCGTGCTC
. : . : . : . : . : . :
JMFN005G03+ GGATCTCTCAAATTGAATGAATATTCTGACTGCTTCGTCGTGAGGGAAATTGGGTTCTGT
JMFN016E01+ GGATCTCTCAAATTGAATGAATATTCTGACTGCTTCGTCGTGAGGGAAATTGGGTTCTGT
rJMSF010O05- GGATCTCTCAAATTGAATGAATATTCTGACTGCTTCGTCGTGAGGGAAATTGGGTTCTGT
____________________________________________________________
consensus GGATCTCTCAAATTGAATGAATATTCTGACTGCTTCGTCGTGAGGGAAATTGGGTTCTGT
. : . : . : . : . : . :
JMFN005G03+ TATCTCAAATATAAGCACGCGTGTCACTGTGCCAAATTTCGTACACTCTTCTGCTACTTC
JMFN016E01+ TATCTCAAATATAAGCACGCGTGTCACTGTGCCAAATTTCGTACACTCTTCTGCTACTTC
rJMSF010O05- TATCTCAAATATAAGCACGCGTGTCACTGTGCCAAATTTCGTACACTCTTCTGCTACTTC
____________________________________________________________
consensus TATCTCAAATATAAGCACGCGTGTCACTGTGCCAAATTTCGTACACTCTTCTGCTACTTC
. : . : . : . : . : . :
JMFN005G03+ ACCTTCTAGATCATCATCCACTTCGCCAGGGCCAACCATGTTCCTGAGCAGTATAACCCT
JMFN016E01+ ACCTTCTAGATCATCATCCACTTCGCCAGGGCCAACCATGTTCCTGAGCAGTATAACCCT
rJMSF010O05- ACCTTCTAGATCATCATCCACTTCGCCAGGGCCAACCATGTTCCTGAGCAGTATAACCCT
____________________________________________________________
consensus ACCTTCTAGATCATCATCCACTTCGCCAGGGCCAACCATGTTCCTGAGCAGTATAACCCT
. : . : . : . : . : . :
JMFN005G03+ TGTTGGAGCCATATTGAAATTAACGCTCTTAACCTTCTTCTCCGGCTGTTTAACCTCATC
JMFN016E01+ TGTTGGAGCCATATTGAAATTAACGCTCTTAACCTTCTTCTCCGGCTGTTTAACCTCATC
rJMSF010O05- TGTTGGAGCCATATTGAAATTAACGCTCTTAACCTTCTTCTCCGGCTGTTTAACCTCATC
____________________________________________________________
consensus TGTTGGAGCCATATTGAAATTAACGCTCTTAACCTTCTTCTCCGGCTGTTTAACCTCATC
. : . : . : . : . : . :
JMFN005G03+ ACCAGCTACAATAACTCCACCTCTCTTATCGGTCTTCTTGGCCATCAAAGGAGTAGTAAT
JMFN016E01+ ACCAGCTACAATAACTCCACCTCTCTTATCGGTCTTCTTGGCCATCAAAGGAGTAGTAAT
rJMSF010O05- ACCAGCTACAATAACTCCACCTCTCTTATCGGTCTTCTTGGCCATCAAAGGAGTAGTAAT
____________________________________________________________
consensus ACCAGCTACAATAACTCCACCTCTCTTATCGGTCTTCTTGGCCATCAAAGGAGTAGTAAT
. : . : . : . : . : . :
JMFN005G03+ CCCCTGCTCTTGCTTCCCTAATCCCTGTCCTTCCTTCCACCCCATCTTCGCCATCATCCT
JMFN016E01+ CCCCTGCTCTTGCTTCCCTAATCCCTGTCCTTCCTTCCACCCCATCTTCGCCATCATCCT
rJMSF010O05- CCCCTGCTCTTGCTTCCCTAATCCCTGTCCTTCCTTCCACCCCATCTTCGCCATCATCCT
____________________________________________________________
consensus CCCCTGCTCTTGCTTCCCTAATCCCTGTCCTTCCTTCCACCCCATCTTCGCCATCATCCT
. : . : . : . : . : . :
JMFN005G03+ CTGTGCAGC
JMFN016E01+ CTGTGCAGCAGTCATGGTCA
rJMSF010O05- CTGTGCAGCAGTCATGGTCATCTTTCCCTCAGCCCCCATTCCCATTCCCAAGCCGGCAGT
____________________________________________________________
consensus CTGTGCAGCAGTCATGGTCATCTTTCCCTCAGCCCCCATTCCCATTCCCAAGCCGGCAGT
. : . : . : . : . : . :
rJMSF010O05- CTCCGATCTCCCCCCGATATTAAACTCTCCGTTACCAGGGGGAGGCGACGGTGATCTCGG
____________________________________________________________
consensus CTCCGATCTCCCCCCGATATTAAACTCTCCGTTACCAGGGGGAGGCGACGGTGATCTCGG
. : . : . : . : . : . :
rJMSF010O05- AGCCTGAGCAGCGCCACCTCCGCCGCTCATAGCAGCTCTTCTCCGCCACGCCTCCTCGNC
____________________________________________________________
consensus AGCCTGAGCAGCGCCACCTCCGCCGCTCATAGCAGCTCTTCTCCGCCACGCCTCCTCGNC