Contig 002781:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010H03Sequence361011929 (2)ref|XP_009595081.1|9e-13PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Nicoti699002781 (3)sp|P04715.1|RBS2_PETHY2e-51RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast
JMSF030J10Sequence557002781 (3)sp|P04715.1|RBS2_PETHY2e-49RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast704002781 (3)sp|P04715.1|RBS2_PETHY1e-70RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast

Alignment

This contig is upended


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JMSF030J10-                                                            GATTACAAAGT
                      ____________________________________________________________
consensus                                                              GATTACAAAGT
 
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JMSF030J10-           AACAAGTACTCAGTGCAGCACAGGCAGCTAGCAATGGCCTCCTCAGTCCTCTCCTCCACC
                      ____________________________________________________________
consensus             AACAAGTACTCAGTGCAGCACAGGCAGCTAGCAATGGCCTCCTCAGTCCTCTCCTCCACC
 
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JMSF030J10-           GCCATCGCCTCCCGCGCCACCGCTGCCCAAGCCAGCATGGTCGCCCCCTTCACCGGCCTC
rJMSF030J10+                         GCCACCGCTGCCCAAGCCAGCATGGTCGCCCCCTTCACCGGCCTC
                      ____________________________________________________________
consensus             GCCATCGCCTCCCGCGCCACCGCTGCCCAAGCCAGCATGGTCGCCCCCTTCACCGGCCTC
 
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JMSF030J10-           AAGTCCACCGCCTCCTTCCCCGTCACCAAGAAGTCCGCCGCCGACTTTACTTCCATCTCC
rJMSF030J10+          AAGTCCACCGCCTCCTTCCCCGTCACCAAGAAGTCCGCCGCCGACTTTACTTCCATCTCC
                      ____________________________________________________________
consensus             AAGTCCACCGCCTCCTTCCCCGTCACCAAGAAGTCCGCCGCCGACTTTACTTCCATCTCC
 
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JMSF030J10-           ACCAACGGTAGCCGAGTACAATGCATGCAGGTGTGGCCCCCATTCGGGTTGAAGAAGTTC
rJMSF030J10+          ACCAACGGTAGCCGAGTACAATGCATGCAGGTGTGGCCCCCATTCGGGTTGAAGAAGTTC
rJMSF010H03+                                     CAGGTGTGGCCCCCATTCGGGTTGAAGAAGTTC
                      ____________________________________________________________
consensus             ACCAACGGTAGCCGAGTACAATGCATGCAGGTGTGGCCCCCATTCGGGTTGAAGAAGTTC
 
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JMSF030J10-           GAGACCCTGTCATACCTGCCTCCCTTGAGCACCGAGCAATTGCTCAAACAAGTGGAGTAC
rJMSF030J10+          GAGACCCTGTCATACCTGCCTCCCTTGAGCACCGAGCAATTGCTCAAACAAGTGGAGTAC
rJMSF010H03+          GAGACCCTGTCATACCTGCCTCCCTTGAGCACCGAGCAATTGCTCAAACAAGTAGAGTAC
                      ____________________________________________________________
consensus             GAGACCCTGTCATACCTGCCTCCCTTGAGCACCGAGCAATTGCTCAAACAAGTGGAGTAC
 
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JMSF030J10-           CTTTTGAACAAGGGATGGGTTCCTTGCTTGGAATTCGAGACCGAGGTCAAAATCAACTAC
rJMSF030J10+          CTTTTGAACAAGGGATGGGTTCCTTGCTTGGAATTCGAGACCGAGGTCAAAATCAACTAC
rJMSF010H03+          CTTTTGAACAAGGGATGGGTTCCTTGCTTGGAATTCGAGACCGAGGTCAAAATCAACTAC
                      ____________________________________________________________
consensus             CTTTTGAACAAGGGATGGGTTCCTTGCTTGGAATTCGAGACCGAGGTCAAAATCAACTAC
 
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JMSF030J10-           TACTACTCTATTATTTAATTTAATTTGATTTAGTGTAAACTTTTAGTTTTGATGGGTCGG
rJMSF030J10+          TACTACTCTATTATTTAATTTAATTTGATTTAGTGTAAACTTTTAGTTTTGATGGGTCGG
rJMSF010H03+          TACTACTCTATTATTTAATTTAATTTGATTTAGTGTAAACTTTTAGTTTTGATGGGTCGG
                      ____________________________________________________________
consensus             TACTACTCTATTATTTAATTTAATTTGATTTAGTGTAAACTTTTAGTTTTGATGGGTCGG
 
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JMSF030J10-           GGTGCAGAAAGGATTCGTGTACCGTGAATGGCACGCTTCACCCGGGTACTATGACGGAAG
rJMSF030J10+          GGTGCAGAAAGGATTCGTGTACCGTGAATGGCACGCTTCACCCGGGTACTATGACGGAAG
rJMSF010H03+          GGTGCAGAAAGGATTCGTGTACCGTGAATGGCACGCTTCACCCGGGTACTATGACGGAAG
                      ____________________________________________________________
consensus             GGTGCAGAAAGGATTCGTGTACCGTGAATGGCACGCTTCACCCGGGTACTATGACGGAAG
 
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JMSF030J10-           ATACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCGACTCANGTGGTTGC
rJMSF030J10+          ATACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCGACTCAGGTGGTTGC
rJMSF010H03+          ATACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCGACTCAGGTGGTTGC
                      ____________________________________________________________
consensus             ATACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACCGACGCGACTCAGGTGGTTGC
 
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JMSF030J10-           GGAGCT                                                      
rJMSF030J10+          GGAGCTGGAGGAGTGCAAGAAGGCTTACCCTGGTGCGTGGGTTAGAATCCTGGGATTCGA
rJMSF010H03+          GGAGCTGGAGGAGTGCAAGAAGGCTTACCCTGGTGCGTGGGTTAGAATCCTGGGATTCGA
                      ____________________________________________________________
consensus             GGAGCTGGAGGAGTGCAAGAAGGCTTACCCTGGTGCGTGGGTTAGAATCCTGGGATTCGA
 
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rJMSF030J10+          CAACAAGCGCCAAGTGCAGTGCATCATGTTCATTGCATACAAGCCCGATGATAAATAGAT
rJMSF010H03+          CAACAAGCGCCAAGTGCAGTGCATCATGTTCATTGCATACAAGCCCGATGATAAATAGAT
                      ____________________________________________________________
consensus             CAACAAGCGCCAAGTGCAGTGCATCATGTTCATTGCATACAAGCCCGATGATAAATAGAT
 
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rJMSF030J10+          TCCATCCCCCAATTTCCTTAAATGATGGATGATTTCCCATTAATCTTGTCTTTTGTTTTT
rJMSF010H03+          TCCATCCCCCAATTTCCTTAAATGATGGATGATTTCCCATTAATCTTGTCTTTTGTTTTT
                      ____________________________________________________________
consensus             TCCATCCCCCAATTTCCTTAAATGATGGATGATTTCCCATTAATCTTGTCTTTTGTTTTT
 
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rJMSF030J10+          CGATTTCGGTCACATGTTGTTGTTGGCATGGAATGGATTCCCAATCCAGTTTATGAGAA 
rJMSF010H03+          CGATTTCGGTCACATGTTGTTGTTGGCATGGAATGGATTCCCAATCCAGTTTATGAGAAT
                      ____________________________________________________________
consensus             CGATTTCGGTCACATGTTGTTGTTGGCATGGAATGGATTCCCAATCCAGTTTATGAGAAT