Contig 002780:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004C17Sequence511002780 (5)ref|XP_009610207.1|2e-54PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-like [Ni
JMFN031J18Sequence403002780 (5)ref|XP_009610207.1|5e-55PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-like [Ni
JMSF010D10Sequence116002780 (5)515002780 (5)ref|XP_009610207.1|4e-53PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-like [Ni
JMSF011C09Sequence325002780 (5)ref|XP_009610207.1|7e-43PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-like [Ni

Alignment

This contig is upended


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JMFN004C17+                                AAACTATCCAAGGCAAATGGTGAATTGGGGATAAATGAT
                      ____________________________________________________________
consensus                                  AAACTATCCAAGGCAAATGGTGAATTGGGGATAAATGAT
 
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JMFN004C17+           ACATACCAAAATGTTTTTTATTAAACCCTAGAAATAAATTCAGCAAACCAAGAAATTAGG
rJMSF010D10-                                   CCCTAGAAATAAATTCAGCAAACCAAGAAATTAGG
                      ____________________________________________________________
consensus             ACATACCAAAATGTTTTTTATTAAACCCTAGAAATAAATTCAGCAAACCAAGAAATTAGG
 
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JMFN004C17+           TTTTCCAAACATTCCCAAAATCATACAGAAATTAAATATCAGAGGGGACTGACCCATTGA
JMFN031J18+                                                                CCATTGA
rJMSF010D10-          TTTTCCAAACATTCCCAAAATCATACAGAAATTAAATATCAGAGGGGACTGACCCATTGA
                      ____________________________________________________________
consensus             TTTTCCAAACATTCCCAAAATCATACAGAAATTAAATATCAGAGGGGACTGACCCATTGA
 
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JMFN004C17+           TTGATTGATCGAACGATCGGACACTAGGCATTGGCAGTCTTGGGGGCTAGGGGAATGGAC
JMFN031J18+           TTGATTGATCGAACGATCGGACACTAGGCATTGGCAGTCTTGGGGGCTAGGGGAATGGAC
rJMSF011C09-                                                           GGGGAATGGAC
rJMSF010D10-          TTGATTGATCGAACGATCGGACACTAGGCATTGGCAGTCTTGGGGGCTAGGGGAATGGAC
                      ____________________________________________________________
consensus             TTGATTGATCGAACGATCGGACACTAGGCATTGGCAGTCTTGGGGGCTAGGGGAATGGAC
 
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JMFN004C17+           TGCTGGCCGCCACTGTGTTTGATGTGGGCTGCCTCCTGCTGGCGGATCTTCTGCATCTGG
JMFN031J18+           TGCTGGCCGCCACTGTGTTTGATGTGGGCTGCCTCCTGCTGGCGGATCTTCTGCATCTGG
rJMSF011C09-          TGCTGGCCGCCACTGTGTTTGATGTGNGCTGCCTCCTGCTGGCGNATCTTCTGCNTCTGG
rJMSF010D10-          TGCTGGCCGCCACTGTGTTTGATGTGGGCTGCCTCCTGCTGGCGGATCTTCTGCATCTGG
                      ____________________________________________________________
consensus             TGCTGGCCGCCACTGTGTTTGATGTGGGCTGCCTCCTGCTGGCGGATCTTCTGCATCTGG
 
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JMFN004C17+           AGCATCCGCTCCATAACAAGCTCGTATTCGCACTTCTCGTAGGAGTGGCGCTCGTTCTCG
JMFN031J18+           AGCATCCGCTCCATAACAAGCTCGTATTCGCACTTCTCGTAGGAGTGGCGCTCGTTCTCG
rJMSF011C09-          AGCATCCGCTCCATAACAAGCTCGNATNCGCACTTCTCGTANGAGTGGCNCTCGTTCTCG
rJMSF010D10-          AGCATCCGCTCCATAACAAGCTCGTATTCGCACTTCTCGTAGGAGTGGCGCTCGTTCTCG
                      ____________________________________________________________
consensus             AGCATCCGCTCCATAACAAGCTCGTATTCGCACTTCTCGTAGGAGTGGCGCTCGTTCTCG
 
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JMFN004C17+           CACTTCCATGGCAGGTACATCTCGGCCTGGCGGCACTTGTTGAGAGGGATCAGCAGGTGG
JMFN031J18+           CACTTCCATGGCAGGTACATCTCGGCCTGGCGGCACTTGTTGAGAGGGATCAGCAGGTGG
rJMSF011C09-          CACTTCCATGGCAGGTACATCTCGGCCTGGCGGCACTTGTTGAGAGGGATCACCANGTGG
rJMSF010D10-          CACTTCCATGGCAGGTACATCTCGGCCTGGCGGCACTTGTTGAGAGGGATCAGCAGGTGG
                      ____________________________________________________________
consensus             CACTTCCATGGCAGGTACATCTCGGCCTGGCGGCACTTGTTGAGAGGGATCAGCAGGTGG
 
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JMFN004C17+           GCGCATTGGTCCCTGTATCCAAGTGGCACCTTCGCCTCAACCATCTCTGCTTGCGTAGCT
JMFN031J18+           GCGCATTGGTCCCTGTATCCAAGTGGCACCTTCGCCTCAACCATCTCTGCTTGCGTAGCT
rJMSF011C09-          NCGCATTGGTCCCTGTATCCAAGTGGCACCTTCGCCTCAACCATCTCTGCTTGCGTAGCT
rJMSF010D10-          GCGCATTGGTCCCTGTATCCAAGTGGCACCTTCGCCTCAACCATCTCTGCTTGCGTAGCT
                      ____________________________________________________________
consensus             GCGCATTGGTCCCTGTATCCAAGTGGCACCTTCGCCTCAACCATCTCTGCTTGCGTAGCT
 
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JMFN004C17+           ATCATCTTCTTCGACGACCCTGGCACCTCCATCTCTCCTCTCTCTCTCTCTC        
JMFN031J18+           ATCATCTTCTTCGACGACCCTGGCACCTCCATCTCTCCTCTCTCTCTCTCTC        
rJMSF011C09-          ATCATCTTCTTCGACGACCCTGGCACCTCCATCTCTCCTCTCTCTCTCTCTCTCTCTCTC
JMSF010D10+                                GGCACNTCCATNTCTCNTCTCTCTCTCTCTCTCTCTCTC
rJMSF010D10-          ATCATCTTCTTCGACGACCCTGGCACCTCCATCTCTCCTCTCTCTCTCTCTCTCTCTCTC
                      ____________________________________________________________
consensus             ATCATCTTCTTCGACGACCCTGGCACCTCCATCTCTCCTCTCTCTCTCTCTCTCTCTCTC
 
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rJMSF011C09-          TCTCTCTCTCTCGA                                              
JMSF010D10+           TCTCTCTCTCTCGATCGATCGATTACGCTACTATTCAGAGTCTCCCTAGTCCAGGCAATC
rJMSF010D10-          TCTCTCTCTCTCGATCGATCGANTACGCTACTATNCAGAGTCTCCCTAGTCCAGGCAATC
                      ____________________________________________________________
consensus             TCTCTCTCTCTCGATCGATCGATTACGCTACTATTCAGAGTCTCCCTAGTCCAGGCAATC