Contig 002779:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF010C20+                                                               AAAAGGA
                      ____________________________________________________________
consensus                                                                  AAAAGGA
 
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rJMSF034A18+                                                             GTTAGACGT
rJMSF010C20+          AAGACGGTCTATGCCCCTGACTCCCGAGGAAACCGCCCTTGCACTAAGGGCGTTAGACGT
                      ____________________________________________________________
consensus             AAGACGGTCTATGCCCCTGACTCCCGAGGAAACCGCCCTTGCACTAAGGGCGTTAGACGT
 
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rJMSF034A18+          TGATCCGAGTATCCAAATTTACATTGCTGCCGGAGAGATATATGGAGGAGAGCGAAGAAT
rJMSF010C20+          TGATCCGAGTATCCAAATTTACATTGCTGCCGGAGAGATATATGGAGGAGAGCGAAGAAT
                      ____________________________________________________________
consensus             TGATCCGAGTATCCAAATTTACATTGCTGCCGGAGAGATATATGGAGGAGAGCGAAGAAT
 
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rJMSF034A18+          GGCTAGTCTAGCAGCATCTTATCCAAACCTGGTTAGAAAGGAGACACTATTGGATCCTTC
rJMSF010C20+          GGCTAGTCTAGCAGCATCTTATCCAAACCTGGTTAGAAAGGAGACACTATTGGATCCTTC
                      ____________________________________________________________
consensus             GGCTAGTCTAGCAGCATCTTATCCAAACCTGGTTAGAAAGGAGACACTATTGGATCCTTC
 
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rJMSF034A18+          CGATCTTAGGTTCTTTCAAAACCACTCATCCCAGATGGCTGCATTAGACTATCTTGTTTC
rJMSF010C20+          CGATCTTAGGTTCTTTCAAAACCACTCATCCCAGATGGCTGCATTAGACTATCTTGTTTC
                      ____________________________________________________________
consensus             CGATCTTAGGTTCTTTCAAAACCACTCATCCCAGATGGCTGCATTAGACTATCTTGTTTC
 
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rJMSF034A18+          ACTTGAGAGTGATATATTCGTACCTACATACGATGGAAACATGGCAAAAGTTGTCGAGGG
rJMSF010C20+          ACTTGAGAGTGATATATTCGTACCTACATACGATGGAAACATGGCAAAAGTTGTCGAGGG
                      ____________________________________________________________
consensus             ACTTGAGAGTGATATATTCGTACCTACATACGATGGAAACATGGCAAAAGTTGTCGAGGG
 
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rJMSF034A18+          TCATCGCAGATATCTCGAATACAAGAAGACGATCCTTTTGGACAGAAGGCTTCTGGTGGA
rJMSF010C20+          TCATCGCAGATATCTCGAATACAAGAAGACGATCCTTTTGGACAGAAGGCTTCTGGTGGA
                      ____________________________________________________________
consensus             TCATCGCAGATATCTCGAATACAAGAAGACGATCCTTTTGGACAGAAGGCTTCTGGTGGA
 
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rJMSF034A18+          TCTGATAGACCAGTATATCGGTGAATCATTAACGTGGGATGAGTTCTCTAACGCTGTTAA
rJMSF010C20+          TCTGATAGACCAGTATATCGGTGAATCATTAACGTGGGATGAGTTCTCTAACGCTGTTAA
                      ____________________________________________________________
consensus             TCTGATAGACCAGTATATCGGTGAATCATTAACGTGGGATGAGTTCTCTAACGCTGTTAA
 
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rJMSF034A18+          GGCAGCTCACGCTGATCACATGGGGAACCCCGCTAAAAGGTTGGTCATTCCGGACCGACC
rJMSF010C20+          GGCAGCTCACGCTGATCACATGGGGAACCCCGCTAAAAGGTTGGTCATTCCGGACCGACC
                      ____________________________________________________________
consensus             GGCAGCTCACGCTGATCACATGGGGAACCCCGCTAAAAGGTTGGTCATTCCGGACCGACC
 
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rJMSF034A18+          CAAGGAAGAGGATTACTTCTACTCCAACCCTTGGGAGTGTTTACAGCCATCAAACGAGGA
rJMSF010C20+          CAAGGAAGAGGATTACTTCTACTCCAACCCTTGGGAGTGTTTACAGCCATCAAACGAGGA
                      ____________________________________________________________
consensus             CAAGGAAGAGGATTACTTCTACTCCAACCCTTGGGAGTGTTTACAGCCATCAAACGAGGA
 
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rJMSF034A18+          TGGAGCGTTAAGTAGTAGCAGTAGTATCTAAATCACGGGGGCAGTAGCATACACGTTTAT
rJMSF010C20+          TGGAGCGTTAAGTAGTAGCAGTAGTATCTAAATCACGGGGGCAGTAGCATACACGTTTAT
                      ____________________________________________________________
consensus             TGGAGCGTTAAGTAGTAGCAGTAGTATCTAAATCACGGGGGCAGTAGCATACACGTTTAT
 
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rJMSF034A18+          ATAAATTTAGTAATCGAAATTCATGTATAGAAGCCCTGCCATTGAAGGGTTATATCAACT
rJMSF010C20+          ATAAATTTAGTAATCGAAATTCATGTATAGAAGCCCTGCCATTGAAGGGTTATATCAACT
                      ____________________________________________________________
consensus             ATAAATTTAGTAATCGAAATTCATGTATAGAAGCCCTGCCATTGAAGGGTTATATCAACT
 
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rJMSF034A18+          GCAGTGTACACAACATAGATTTTGTTTCATTGGAAGCAAAGGTTGTCTGTTTGTCAGCTT
rJMSF010C20+          GCAGTGTACACAACATAGATTTTGTTTCATTGGAAGCAAAGGTTGTCTGTTTGTCAGCTT
                      ____________________________________________________________
consensus             GCAGTGTACACAACATAGATTTTGTTTCATTGGAAGCAAAGGTTGTCTGTTTGTCAGCTT
 
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rJMSF034A18+          CACGCCTTTCCTCGTCTAGTATCTGATATATATGTATAGCAGCCCCATTATGT       
rJMSF010C20+          CACGCCTTTCCTCGTCTAGTATCT-ATATATATGTATAGCAGCCCCATTATGTTGTAACA
                      ____________________________________________________________
consensus             CACGCCTTTCCTCGTCTAGTATCTGATATATATGTATAGCAGCCCCATTATGTTGTAACA