Contig 002777:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033M09Sequence590020616ref|XP_011074358.1|4e-113PREDICTED: calcium-transporting ATPase 1, chloroplastic [Sesamum indicum]668002777 (4)emb|CDP01203.1|8e-47unnamed protein product [Coffea canephora]
JMFF038P17Sequence562004814 (8)ref|XP_010320298.1|1e-70PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum]768002777 (4)ref|XP_010091239.1|3e-73hypothetical protein L484_005263 [Morus notabilis] gb|EXB43802.1| hypothetical p
JMSF009I09Sequence417004814 (8)emb|CDP01203.1|2e-38unnamed protein product [Coffea canephora]799002777 (4)emb|CDP01203.1|9e-61unnamed protein product [Coffea canephora]
JMSF021F07Sequence671004814 (8)ref|XP_010320298.1|3e-94PREDICTED: calcium-transporting ATPase 1, chloroplastic [Solanum lycopersicum]774002777 (4)ref|XP_010091239.1|5e-75hypothetical protein L484_005263 [Morus notabilis] gb|EXB43802.1| hypothetical p

Alignment

This contig is upended


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rJMFF038P17+                                                               GGAAGAA
                      ____________________________________________________________
consensus                                                                  GGAAGAA
 
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rJMFF038P17+          AAGGGANCTTCATCAGCAAATGTAATGTGGAGGAATATTTTCGGACAATCATTATATCAG
rJMSF021F07+                            AATGTAATGTGGAGGAATATTTTCGGACAATCATTATATCAG
rJMSF009I09+                                                  TCGGACAATCATTATATCAG
                      ____________________________________________________________
consensus             AAGGGANCTTCATCAGCAAATGTAATGTGGAGGAATATTTTCGGACAATCATTATATCAG
 
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rJMFF038P17+          TTTGTTATCATATGGTATCTTCAAGGTTCGGGAAAAGCAGCNTTTCATCTTGATGGCCCC
rJMSF021F07+          TTTGTTATCATATGGTATCTTCAAGGTTCGGGAAAAGCAGCCTTTCATCTTGATGGCCCC
rJMSF009I09+          -TTGGTATCATATGGTATCTTCAAGGTTCGGGAAAAGCAGCCTTTCATCTTGATGGCCCC
                      ____________________________________________________________
consensus             TTTGTTATCATATGGTATCTTCAAGGTTCGGGAAAAGCAGCCTTTCATCTTGATGGCCCC
 
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rJMFF038P17+          GATTCTGATTTGGTTCTCAACACGCTCATTTTCAATGTATTTGTCTTCTGCCAGGTTTTC
rJMSF021F07+          GATTCTGATTTGGTTCTCAACACGCTCATTTTCAATGTATTTGTCTTCTGCCAGGTTTTC
rJMFF033M09+                        TCTCAACACGCTCATTTTCAATGTATTTGTCTTCTGCCAGGTTTTC
rJMSF009I09+          GATTCTGATTTGGTTCTCAACACGCTCATTTTCAATGTATTTGTCTTCTGCCAGGTTTTC
                      ____________________________________________________________
consensus             GATTCTGATTTGGTTCTCAACACGCTCATTTTCAATGTATTTGTCTTCTGCCAGGTTTTC
 
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rJMFF038P17+          AATGAGATCAGCTCGAGGGATATGGAGAAGATCAACGTGTTCCATGGCATACTAAACAAC
rJMSF021F07+          AGTGAGATCAGCTCGAGGGATATGGAGAAGATCAACGTGTTCCATGGCATACTAAACAAC
rJMFF033M09+          AATGAGATCAGCTCGAGGGATATGGAGAAGATCAACGTGTTCCATGGCATACTAAACAAC
rJMSF009I09+          AATGAGATCAGCTCGAGGGATATGGAGAAGATCAACGTGTTCCATGGCATACTAAACAAC
                      ____________________________________________________________
consensus             AATGAGATCAGCTCGAGGGATATGGAGAAGATCAACGTGTTCCATGGCATACTAAACAAC
 
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rJMFF038P17+          TATGTATTTGTTGCCGTTATTAGTTGCACGGTCCTATTCCAAATCATCATCGTTGAATTC
rJMSF021F07+          TATGTATTTGTTGCCGTTATTAGTTGCACGGTCCTATTCCAAATCATCATCGTTGAATTC
rJMFF033M09+          TATGTATTTGTTGCCGTTATTAGTTGCACGGTCCTATTCCAAATCATCATCGTTGAATTC
rJMSF009I09+          TATGTATTTGTTGCCGTTATTAGTTGCACGGTCCTATTCCAAATCATCATCGTTGAATTC
                      ____________________________________________________________
consensus             TATGTATTTGTTGCCGTTATTAGTTGCACGGTCCTATTCCAAATCATCATCGTTGAATTC
 
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rJMFF038P17+          CTGGGCACTTTCGCAAACACCACTCCTCTTACCTGGCAACAATGGTTTGCAACTGTTGCC
rJMSF021F07+          CTGGGCACTTTCGCAAACACCACTCCTCTTACCTGGCAACAATGGTTTGCAACTGTTGCC
rJMFF033M09+          CTGGGCACTTTCGCAAACACCACTCCTCTTACCTGGCAACAATGGTTTGCAACTGTTGCC
rJMSF009I09+          CTGGGCACTTTCGCAAACACCACTCCTCTTACCTGGCAACAATGGTTTGCAACTGTTGCC
                      ____________________________________________________________
consensus             CTGGGCACTTTCGCAAACACCACTCCTCTTACCTGGCAACAATGGTTTGCAACTGTTGCC
 
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rJMFF038P17+          ATCGGATTCCTAGGCATGCCTGTTGCTGCTGCAATTAAGATGATCCCTGTAGGATCCCTC
rJMSF021F07+          ATCGGATTCCTAGGCATGCCTGTTGCTGCTGCAATTAAGATGATCCCTGTAGGATCCCTC
rJMFF033M09+          ATCGGATTCCTAGGCATGCCTGTTGCTGCTGCAATTAAGATGATCCCTGTAGGATCCCTC
rJMSF009I09+          ATCGGATTCCTAGGCATGCCTGTTGCTGCTGCAATTAAGATGATCCCTGTAGGATCCCTC
                      ____________________________________________________________
consensus             ATCGGATTCCTAGGCATGCCTGTTGCTGCTGCAATTAAGATGATCCCTGTAGGATCCCTC
 
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rJMFF038P17+          TGAATTCCTGGTGAAGATATAATGACTTGAAATAGAACCATGAAAAAGACCTTTGATATG
rJMSF021F07+          TGAATTCCTGGTGAAGATATAATGACTTGAAATAGAACCATGAAAAAGACCTTTGATATG
rJMFF033M09+          TGAATTCCTGGTGAAGATATAATGACTTGAAATAGAACCATGAAAAAGACCTTTGATATG
rJMSF009I09+          TGAATTCCTGGTGAAGATATAATGACTTGAAATAGAACCATGAAAAAGACCTTTGATATG
                      ____________________________________________________________
consensus             TGAATTCCTGGTGAAGATATAATGACTTGAAATAGAACCATGAAAAAGACCTTTGATATG
 
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rJMFF038P17+          TCAAGTTCAGGTTTTGGTGGAACTAGTTGCAGCGACCCGAGACTGTAAGATAGTATTAAG
rJMSF021F07+          TCAAGTTCAGGTTTTGGTGGAACTAGTTGCAGCGACCCGAGACTGTAAGATAGTATTAAG
rJMFF033M09+          TCAAGTTCAGGTTTTGGTGGAACTAGTTGCAGCGACCCGAGACTGTAAGATAGTATTAAG
rJMSF009I09+          TCAAGTTCAGGTTTTGGTGGAACTAGTTGCAGCGACCCGAGACTGTAAGATAGTATTAAG
                      ____________________________________________________________
consensus             TCAAGTTCAGGTTTTGGTGGAACTAGTTGCAGCGACCCGAGACTGTAAGATAGTATTAAG
 
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rJMFF038P17+          GTTGAACATCCCCTGATACAGTTGCTGGAAAAGGTGGTCTGTTTTGGCAGTTAATCCTAA
rJMSF021F07+          GTTGAACATCCCCTGATACAGTTGCTGGAAAAGGTGGTCTGTTTTGGCAGTTAATCCTAA
rJMFF033M09+          GTTGAACATCCCCTGATACAGTTGCTGGAAAAGGTGGTCTGTTTTGGCAGTTAATCCTAA
rJMSF009I09+          GTTGAACATCCCCTGATACAGTTGCTGGAAAAGGTGGTCTGTTTTGGCAGTTAATCCTAA
                      ____________________________________________________________
consensus             GTTGAACATCCCCTGATACAGTTGCTGGAAAAGGTGGTCTGTTTTGGCAGTTAATCCTAA
 
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rJMFF038P17+          AGAACATGGAATCGGGCTTTTGAAGCTATCAGAACAGTGGGAATTCATTGTTGAATACCT
rJMSF021F07+          AGAACATGGAATCGGGCTTTTGAAGCTATCAGAACAGTGGGAATTCATTGTTGAATACCT
rJMFF033M09+          AGAACATGGAATCGGGCTTTTGAAGCTATCAGAACAGTGGGAATTCATTGTTGAATACCT
rJMSF009I09+          AGAACATGGAATCGGGCTTTTGAAGCTATCAGAACAGTGGGAATTCATTGTTGAATACCT
                      ____________________________________________________________
consensus             AGAACATGGAATCGGGCTTTTGAAGCTATCAGAACAGTGGGAATTCATTGTTGAATACCT
 
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rJMFF038P17+          TGAAATTCAAGGTATTAAGATTGTTTTGCAGCATTCTTGTCATTGAATTTTGTGATGGGC
rJMSF021F07+          TGAAATTCAAGGTATTAAGATTGTTTTGCAGCATTCTTGTCATTGAATTTTGTGATGGGC
rJMFF033M09+          TGAAATTCAAGGTATTAAGATTGTTTTGCAGCATTCTTGTCATTGAATTTTGTGATGGGC
rJMSF009I09+          TGAAATTCAAGGTATTAAGATTGTTTTGCAGCATTCTTGTCATTGAATTTTGTGATGGGC
                      ____________________________________________________________
consensus             TGAAATTCAAGGTATTAAGATTGTTTTGCAGCATTCTTGTCATTGAATTTTGTGATGGGC
 
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rJMFF038P17+          AAAATTCTGCAGAAATCATGATCTGATTCTCTGCAAAACTC                   
rJMSF021F07+          AAAATTCTGCAGAAATCATGATCTGATTCTCTGCAAAACTCTT                 
rJMFF033M09+          AAAATTCTGCAGAAATCATGATCTGATTCTCTGCAAAACTCTTTAATTAGCGATTTTGTT
rJMSF009I09+          AAAATTCTGCAGAAATCATGATCTGATTCTCTGCAAAACTCTTTAATTAGCGATTTTGTT
                      ____________________________________________________________
consensus             AAAATTCTGCAGAAATCATGATCTGATTCTCTGCAAAACTCTTTAATTAGCGATTTTGTT
 
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rJMFF033M09+          TGTCCTTTGTATACCATATAAT                                      
rJMSF009I09+          TGTCCTTTGTATACCATATAATTCTTTTATCATGCTTTAGTCCTACCACCTAGTGTGAGC
                      ____________________________________________________________
consensus             TGTCCTTTGTATACCATATAATTCTTTTATCATGCTTTAGTCCTACCACCTAGTGTGAGC