| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF003C04 | Sequence | 332 | 011923 (3) | 708 | 002776 (3) | ref|XP_010275124.1| | 2e-108 | PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027 | |||
| JMSF009D24 | Sequence | 417 | 011923 (3) | ref|XP_010275936.1| | 1e-12 | PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027 | 709 | 002776 (3) | ref|XP_010275124.1| | 2e-108 | PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027 |
| JMSF051J14 | Sequence | 626 | 011923 (3) | ref|XP_010275124.1| | 4e-55 | PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027 | 740 | 002776 (3) | ref|XP_010275124.1| | 5e-122 | PREDICTED: probable galacturonosyltransferase 10 [Nelumbo nucifera] ref|XP_01027 |
This contig is upended
. : . : . : . : . : . :
rJMSF051J14+ GACGTCAGGATGGTGGTAAA
____________________________________________________________
consensus GACGTCAGGATGGTGGTAAA
. : . : . : . : . : . :
rJMSF051J14+ ACCCCTATAAAATACCGTAAACCCAAAGTACCTCTCGATGCTCAACCACCTTAGGTTCTA
____________________________________________________________
consensus ACCCCTATAAAATACCGTAAACCCAAAGTACCTCTCGATGCTCAACCACCTTAGGTTCTA
. : . : . : . : . : . :
rJMSF051J14+ TATTCCCGAAGTTTTCCCAAAGCTTGATAAGGTAGTATTTCTCGACGATGATGTTGTGGT
rJMSF003C04+ TTTTCCCAAAGCTTGATAAGGTAGTATTTCTCGACGATGATGTTGTGGT
rJMSF009D24+ TTTTCCCAAAGCTTGATAAGGTAGTATTTCTCGACGATGATGTTGTGGT
____________________________________________________________
consensus TATTCCCGAAGTTTTCCCAAAGCTTGATAAGGTAGTATTTCTCGACGATGATGTTGTGGT
. : . : . : . : . : . :
rJMSF051J14+ TCAAAAGGATCTATCGCCATTGTTCTCCATTGATTTGAAAGGAAACGTGAATGGAGCCAT
rJMSF003C04+ TCAAAAGGATCTATCGCCATTGTTCTCCATTGATTTGAAAGGAAACGTGAATGGAGCCAT
rJMSF009D24+ TCAAAAGGATCTATCGCCATTGTTCTCCATTGATTTGAAAGGAAACGTGAATGGAGCCAT
____________________________________________________________
consensus TCAAAAGGATCTATCGCCATTGTTCTCCATTGATTTGAAAGGAAACGTGAATGGAGCCAT
. : . : . : . : . : . :
rJMSF051J14+ CGAGACTTGCACGGAGACATTCCACAGATACCACAAATACTTGAACTCCTCCCACCCACT
rJMSF003C04+ CGAGACTTGCACGGAGACATTCCACAGATACCACAAATACTTGAACTCCTCCCACCCACT
rJMSF009D24+ CGAGACTTGCACGGAGACATTCCACAGATACCACAAATACTTGAACTCCTCCCACCCACT
____________________________________________________________
consensus CGAGACTTGCACGGAGACATTCCACAGATACCACAAATACTTGAACTCCTCCCACCCACT
. : . : . : . : . : . :
rJMSF051J14+ TATACGCTCACATTTCGATCCAGATGCTTGTGGGTGGGCCTTTGGCATGAATATCTTTGA
rJMSF003C04+ TATACGCTCACATTTCGATCCAGATGCTTGTGGGTGGGCCTTTGGCATGAATATCTTTGA
rJMSF009D24+ TATACGCTCACATTTCGATCCAGATGCTTGTGGGTGGGCCTTTGGCATGAATATCTTTGA
____________________________________________________________
consensus TATACGCTCACATTTCGATCCAGATGCTTGTGGGTGGGCCTTTGGCATGAATATCTTTGA
. : . : . : . : . : . :
rJMSF051J14+ TTTGGTTCAATGGAGGAGGAAGAATGTGACTGGTATATATCACTACTGGCAGGAGAAGAA
rJMSF003C04+ TTTGGTTCAATGGAGGAGGAAGAATGTGACTGGTATATATCACTACTGGCAGGAGAAGAA
rJMSF009D24+ TTTGGTTCAATGGAGGAGGAAGAATGTGACTGGTATATATCACTACTGGCAGGAGAAGAA
____________________________________________________________
consensus TTTGGTTCAATGGAGGAGGAAGAATGTGACTGGTATATATCACTACTGGCAGGAGAAGAA
. : . : . : . : . : . :
rJMSF051J14+ CGTAGATCGAACACTATGGAAGCTCGGGACCTTGCCACCCGGGCTTCTTACCTTCTACGG
rJMSF003C04+ CGTAGATCGAACACTATGGAAGCTCGGGACCTTGCCACCCGGGCTTCTTACCTTCTACGG
rJMSF009D24+ CGTAGATCGAACACTATGGAAGCTCGGGACCTTGCCACCCGGGCTTCTTACCTTCTACGG
____________________________________________________________
consensus CGTAGATCGAACACTATGGAAGCTCGGGACCTTGCCACCCGGGCTTCTTACCTTCTACGG
. : . : . : . : . : . :
rJMSF051J14+ GTTGACTGAACCGTTGGATCGTAGTTGGCATGTTTTGGGATTGGGATACACAAACGTCGA
rJMSF003C04+ GTTGACTGAACCGTTGGATCGTAGTTGGCATGTTTTGGGATTGGGATACACAAACGTCGA
rJMSF009D24+ GTTGACTGAACCGTTGGATCGTAGTTGGCATGTTTTGGGATTGGGATACACAAACGTCGA
____________________________________________________________
consensus GTTGACTGAACCGTTGGATCGTAGTTGGCATGTTTTGGGATTGGGATACACAAACGTCGA
. : . : . : . : . : . :
rJMSF051J14+ TCCACAGGTGATCGAGAAAGGTGCAGTTCTACATTTCAATGGAAACTCCAAGCCATGGCT
rJMSF003C04+ TCCACAGGTGATCGAGAAAGGTGCAGTTCTACATTTCAATGGAAACTCCAAGCCATGGCT
rJMSF009D24+ TCCACAGGTGATCGAGAAAGGTGCAGTTCTACATTTCAATGGAAACTCCAAGCCATGGCT
____________________________________________________________
consensus TCCACAGGTGATCGAGAAAGGTGCAGTTCTACATTTCAATGGAAACTCCAAGCCATGGCT
. : . : . : . : . : . :
rJMSF051J14+ GAAGATTGGAATGGAGAAGTACAAACCATTGTGGAACAAATACATAGATTATTCTCATCC
rJMSF003C04+ GAAGATTGGAATGGAGAAGTACAAACCATTGTGGAACAAATACATAGATTATTCTCATCC
rJMSF009D24+ GAAGATTGGAATGGAGAAGTACAAACCATTGTGGAACAAATACATAGATTATTCTCATCC
____________________________________________________________
consensus GAAGATTGGAATGGAGAAGTACAAACCATTGTGGAACAAATACATAGATTATTCTCATCC
. : . : . : . : . : . :
rJMSF051J14+ TCTCTTGCAACAATGCAATATCCATTGACCATTGTCAATAGATAAGGCTTTAGTTAGCCA
rJMSF003C04+ TCTCTTGCAACAATGCAATATCCATTGACCATTGTCAATAGATAAGGCTTTAGTTAGCCA
rJMSF009D24+ TCTCTTGCAACAATGCAATATCCATTGACCATTGTCAATAGATAAGGCTTTAGTTAGCCA
____________________________________________________________
consensus TCTCTTGCAACAATGCAATATCCATTGACCATTGTCAATAGATAAGGCTTTAGTTAGCCA
. : . : . : . : . : . :
rJMSF051J14+ TACCAAAACCAAAGATGAATCCTTTCTATATATGTCTCTTGAAACATAAAAC
rJMSF003C04+ TACCAAAACCAAAGATGAATCCTTTCTATATATGTCTCTTGAAACATAAAACAATGTTGT
rJMSF009D24+ TACCAAAACCAAAGATGAATCCTTTCTATATATGTCTCTTGAAACATAAAACAATGTTGT
____________________________________________________________
consensus TACCAAAACCAAAGATGAATCCTTTCTATATATGTCTCTTGAAACATAAAACAATGTTGT
. : . : . : . : . : . :
rJMSF003C04+ TAATCTGACCATGGGTTTATGCTTAGAAATCTCTAAAATTTTTCAAATCATTGATGTAT
rJMSF009D24+ TAATCTGACCATGGGTTTATGCTTAGAAATCTCTAAAATTTTTCAAATCATTGATGTATT
____________________________________________________________
consensus TAATCTGACCATGGGTTTATGCTTAGAAATCTCTAAAATTTTTCAAATCATTGATGTATT