| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010M06 | Sequence | 524 | 002774 (5) | ref|XP_004241481.1| | 7e-31 | PREDICTED: coiled-coil domain-containing protein 12 isoform X2 [Solanum lycoper | 614 | 002774 (5) | ref|XP_004241481.1| | 2e-30 | PREDICTED: coiled-coil domain-containing protein 12 isoform X2 [Solanum lycoper |
| JMFN042A21 | Sequence | 624 | 002774 (5) | ref|XP_004241481.1| | 3e-42 | PREDICTED: coiled-coil domain-containing protein 12 isoform X2 [Solanum lycoper | |||||
| JMSF009C13 | Sequence | 312 | 002774 (5) | ref|XP_010322514.1| | 6e-16 | PREDICTED: coiled-coil domain-containing protein 12 isoform X1 [Solanum lycoper | 545 | 002774 (5) | ref|XP_004241481.1| | 1e-42 | PREDICTED: coiled-coil domain-containing protein 12 isoform X2 [Solanum lycoper |
This contig is upended
. : . : . : . : . : . :
rJMFF010M06- ATAGATAAACATGACAATCTT
JMFN042A21+ TTCAAGATAATAGATAAACATGACAATCTT
____________________________________________________________
consensus TTCAAGATAATAGATAAACATGACAATCTT
. : . : . : . : . : . :
rJMFF010M06- TAACACCAAATCACATCTCAAATCTTAATTTGATTAATTCATAATAAAACAAATTATGCA
JMFN042A21+ TAACACCAAATCACATCTCAAATCTTAATNTGATTAATTCATAATAAAACAAATTATGCA
rJMSF009C13- TATGCA
____________________________________________________________
consensus TAACACCAAATCACATCTCAAATCTTAATTTGATTAATTCATAATAAAACAAATTATGCA
. : . : . : . : . : . :
JMFF010M06+ ACGGTACAAAGCTACATAAGTAAAGGTTACACTTTGAAATCTCAAGAATTT
rJMFF010M06- TAATCTCTAACGGTACAAAGCTACATAAGTAAAGGTTACACTTTGAAATCTCAAGAATTT
JMFN042A21+ TAATCTCTAACGGTACAAAGCTACATAAGTAAAGGTTACACTTTGAAATCTCAAGAATTT
rJMSF009C13- TAATCTCTAACGGTACAAAGCTACATAAGTAAAGGTTACACTTTGAAATCTCAAGAATTT
____________________________________________________________
consensus TAATCTCTAACGGTACAAAGCTACATAAGTAAAGGTTACACTTTGAAATCTCAAGAATTT
. : . : . : . : . : . :
JMFF010M06+ GTGCCCAGATCTTCAGCCAATCTTCTCTTCTCTTCCTCCTCCCCTAGTTGATGCAGAGCC
rJMFF010M06- GTGCCCAGATCTTCAGCCAATCTTCTCTTCTCTTCCTCCTCCCCTAGTTGATGCAGAGCC
JMFN042A21+ GTGCCCAGATCTTCAGCCAATCTTCTCTTCTCTTCCTCCTCCCCTAGTTGATGCAGAGCC
rJMSF009C13- GTGCCCAGATCTTCAGCCAATCTTCTCTTCTCTTCCTCCTCCCCTAGTTGATGCAGAGCC
____________________________________________________________
consensus GTGCCCAGATCTTCAGCCAATCTTCTCTTCTCTTCCTCCTCCCCTAGTTGATGCAGAGCC
. : . : . : . : . : . :
JMFF010M06+ TTGAGTGAGCGCTTCTCAAGCTTGTCAAGCCTCTTCTGTACGTCTCTCCTCAAGTCCCAA
rJMFF010M06- TTGAGTGAGCGCTTCTCAAGCTTGTCAAGCCTCTTCTGTACGTCTCTCCTCAAGTCCCAA
JMFN042A21+ TTGAGTGAGCGCTTCTCAAGCTTGTCAAGCCTCTTCTGTACGTCTCTCCTCAAGTCCCAA
rJMSF009C13- TTGAGTGAGCGCTTCTCAAGCTTGTCAAGCCTCTTCTGTACGTCTCTCCTCAAGTCCCAA
____________________________________________________________
consensus TTGAGTGAGCGCTTCTCAAGCTTGTCAAGCCTCTTCTGTACGTCTCTCCTCAAGTCCCAA
. : . : . : . : . : . :
JMFF010M06+ TTCGGTTTTTTTGGGGGCAATATTCAAGAAGGGATCCTCATTTTTCTCCTTTTTGTCTTG
rJMFF010M06- TTCGGTTTTTTTGGGGGCAATATTCAAGAAGGGATCCTCATTTTTCTCCTTTTTGTCTTG
JMFN042A21+ TTCGG-TTTTTTGGGGGCAATATTCAAGAAGGGATCCTCATTTTTCTCCTTTTTGTCTTG
JMSF009C13+ CTTTTTGTCTTG
rJMSF009C13- TTCGG-TTTTTTGGGGGCAATATTCAAGAAGGGATCCTCATTTTTCTCCTTTTTGTCTTG
____________________________________________________________
consensus TTCGGTTTTTTTGGGGGCAATATTCAAGAAGGGATCCTCATTTTTCTCCTTTTTGTCTTG
. : . : . : . : . : . :
JMFF010M06+ GGGTGGAGTTAGGTTTGCCATAGGGTCATCGAACTTGGGTAATACTGGAGGGGCAAGTTT
rJMFF010M06- GGGTGGAGTTAGGTTTGCCATAGGGTCATCGAACTTGGGTAATACTGGAGGGGCAAGTTT
JMFN042A21+ GGGTGGAGTTAGGTTTGCCATAGGGTCATCGAACTTGGGTAATACTGGAGGGGCAAGTTT
JMSF009C13+ GGGTGGAGTTAGGTTTGCCATAGGGTCATCGAACTTGGGTAATACTGGAGGGGCAAGTTT
rJMSF009C13- GGGTGGAGTTAGGTTTGCCATAGGGTCATCGAACTTGGGTAATACTGGAGGGGCAAGTTT
____________________________________________________________
consensus GGGTGGAGTTAGGTTTGCCATAGGGTCATCGAACTTGGGTAATACTGGAGGGGCAAGTTT
. : . : . : . : . : . :
JMFF010M06+ ACCCTCCTGAAGGTGCTTGTCTTGAGGCAGATAATTTCGGAATTTCATTTGGAAATTCTC
rJMFF010M06- ACCCTCCTGAAGGTGCTTGTCTTGAGGCAGATAATTTCGGAATTTCATTTGGAAATTCTC
JMFN042A21+ ACCCTCCTGAAGGTGCTTGTCTTGAGGCAGATAATTTCGGAATTTCATTTGGAAATTCTC
JMSF009C13+ ACCCTCCTGAAGGTGCTTGTCTTGAGGCAGATAATTTCGGAATTTCATTTGGAAATTCTC
rJMSF009C13- ACCCTCCTGAAGGTGCTTGTCTTGAGGCAGATAATTTCGGAATTTCATTTGGAAATTCTC
____________________________________________________________
consensus ACCCTCCTGAAGGTGCTTGTCTTGAGGCAGATAATTTCGGAATTTCATTTGGAAATTCTC
. : . : . : . : . : . :
JMFF010M06+ ATCATTTTCTTGTTGGTCTTGGCTAGCATCCTTATCATCGTCGGGGGTTTCGTGAAGCTC
rJMFF010M06- ATCATTTTCTTGTTGGTCTTGGCTAGCATCCTTATCATCGTCGGGGGTTTCGTGAAGCTC
JMFN042A21+ ATCATTTTCTTGTTGGTCTTGGCTAGCATCCTTATCATCGTCGGGGGTTTCGTGAAGCTC
JMSF009C13+ ATCATTTTCTTGTTGGTCTTGGCTAGCATCCTTATCATCGTCGGGGGTTTCGTGAAGCTC
rJMSF009C13- ATCATTTTCTTGTTGGTCTTGGCTAGCATCCTTATCATCGTCGGGGGTTTCGTGAAGCTC
____________________________________________________________
consensus ATCATTTTCTTGTTGGTCTTGGCTAGCATCCTTATCATCGTCGGGGGTTTCGTGAAGCTC
. : . : . : . : . : . :
JMFF010M06+ TTGGGCAGCTCTGAGGGCCTTGAGCCGCTCCCTACGGGCTGCCGCCGCCGCCTCGACCGA
rJMFF010M06- TTGGGCAGCTCTGAGGGCCTTGAGCCGCTCCCTACGGGCTGCCGCCGCCGCCTCGACCGA
JMFN042A21+ TTGGGCAGCTCTGAGGGCCTTGAGCCGCTCCCTACGGGCTGCCGCCGCCGCCTCGACCGA
JMSF009C13+ TTGGGCAGCTCTGAGGGCCTTGAGCCGCTCCCTACGGGCTGCCGCCGCCGCCTCGACCGA
rJMSF009C13- TTGGGCAGCTCTGAGGGCCTTGAGCCGCTCCCTACGGGCTGCCGCCGCCGCCTCGACCGA
____________________________________________________________
consensus TTGGGCAGCTCTGAGGGCCTTGAGCCGCTCCCTACGGGCTGCCGCCGCCGCCTCGACCGA
. : . : . : . : . : . :
JMFF010M06+ GCTTTCATCCTCAATTCCCATTCCAAAAAGCTTAATCCAGTAGAATACCGCAC
rJMFF010M06- GCTTTCATCCTCAATTCCCATTCCAAAAAGCTTAATCCAGTAGAATACCGCAC
JMFN042A21+ GCTTTCATCCTCAATTCCCATTCCAAAAAGCTTAATCCAGTAGAATACCGCAC
JMSF009C13+ GCTTTCATCCTCAATTCCCATTCCAAAAAGCTTAATCCAGTAGAATACCGCAC
rJMSF009C13- GCTTTCATCCTCAATTCCCATTCCAAAAAGCTTAATCCAGTAGAATACCGCACAGTCATC
____________________________________________________________
consensus GCTTTCATCCTCAATTCCCATTCCAAAAAGCTTAATCCAGTAGAATACCGCACAGTCATC