| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP004E12 | Sequence | 195 | 002772 (9) | ||||||||
| JMFN028A12 | Sequence | 639 | 002772 (9) | ref|XP_009802737.1| | 9e-70 | PREDICTED: fasciclin-like arabinogalactan protein 7 [Nicotiana sylvestris] ref| | |||||
| JMSF007O21 | Sequence | 242 | 002772 (9) | 683 | 002772 (9) | ref|XP_009802737.1| | 2e-50 | PREDICTED: fasciclin-like arabinogalactan protein 7 [Nicotiana sylvestris] ref| | |||
| JMSF008O21 | Sequence | 680 | 002772 (9) | ref|XP_009802737.1| | 8e-50 | PREDICTED: fasciclin-like arabinogalactan protein 7 [Nicotiana sylvestris] ref| | |||||
| JMSF010E05 | Sequence | 419 | 002772 (9) | ref|XP_010693553.1| | 3e-23 | PREDICTED: fasciclin-like arabinogalactan protein 7 [Beta vulgaris subsp. vulga | |||||
| JMSF025B15 | Sequence | 554 | 002772 (9) | 767 | 002772 (9) | ref|XP_009802737.1| | 1e-77 | PREDICTED: fasciclin-like arabinogalactan protein 7 [Nicotiana sylvestris] ref| | |||
| JMSF037E17 | Sequence | 528 | 023252 | 765 | 002772 (9) | ref|XP_009802737.1| | 2e-83 | PREDICTED: fasciclin-like arabinogalactan protein 7 [Nicotiana sylvestris] ref| | |||
This contig is upended
. : . : . : . : . : . :
JMSF025B15- GGGGGACATCA
____________________________________________________________
consensus GGGGGACATCA
. : . : . : . : . : . :
JMSF025B15- TGAGAAACACACAGGAAGTAAGAAAACAAAAAGAAATGATAAAATTAGACAAAGAATTAA
____________________________________________________________
consensus TGAGAAACACACAGGAAGTAAGAAAACAAAAAGAAATGATAAAATTAGACAAAGAATTAA
. : . : . : . : . : . :
JMSF025B15- AACGAAAAAAAAAAGGAAATCTTTAGNGGTTGGGATTTGGAAGCAAGCAAGCTGACAGAG
____________________________________________________________
consensus AACGAAAAAAAAAAGGAAATCTTTAGNGGTTGGGATTTGGAAGCAAGCAAGCTGACAGAG
. : . : . : . : . : . :
JMSF025B15- AAACCCCAACTCACATCTAAACTTTTCCTTAAAGACTCCCTCATTCCAAGTTATTTTTTT
____________________________________________________________
consensus AAACCCCAACTCACATCTAAACTTTTCCTTAAAGACTCCCTCATTCCAAGTTATTTTTTT
. : . : . : . : . : . :
JMSF025B15- ATAATTGAATATAATCATATCACCAATTTCACCATCATTTTCACTACAACAGTCGCACTC
____________________________________________________________
consensus ATAATTGAATATAATCATATCACCAATTTCACCATCATTTTCACTACAACAGTCGCACTC
. : . : . : . : . : . :
JMSF025B15- AGCTCAACGGTCAATAGTAATGCCCAGTATTCCCTTTTAACAAAATAAATACTCTCCCCC
____________________________________________________________
consensus AGCTCAACGGTCAATAGTAATGCCCAGTATTCCCTTTTAACAAAATAAATACTCTCCCCC
. : . : . : . : . : . :
JMSF025B15- TCAGCCTTTGTCTTCCACCTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
JMSF007O21- CTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
JMSF010E05- CTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
JMCP004E12+ GAG
JMFN028A12- CCCTCTCTCTCTCTCTCTCTCTCTGAG
____________________________________________________________
consensus TCAGCCTTTGTCTTCCACCTCCAAACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTCTGAG
. : . : . : . : . : . :
JMSF025B15- TTGCTCAACTCAGCTCAGTTCTCCCC
JMSF007O21- TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
JMSF010E05- TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
JMCP004E12+ TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
JMFN028A12- TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
____________________________________________________________
consensus TTGCTCAACTCAGCTCAGTTCTCCCCAGGGACTCTAGTCTCTAGTGTTTATTCCAGGGAG
. : . : . : . : . : . :
JMSF007O21- AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
JMSF010E05- AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
JMCP004E12+ AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
JMFN028A12- AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
____________________________________________________________
consensus AGAGAGAGAAGCACATTATCATACCTGTAAGATGGATTACACTTTTGTGTTTGTGATTGC
. : . : . : . : . : . :
JMSF007O21- TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
JMSF010E05- TAGTCNGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
JMCP004E12+ TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
JMFN028A12- TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
____________________________________________________________
consensus TAGTCTGATGATCTTTTCTTGCTCGATGCCGGCAGTGAATGCCCAAAGCATTTCTCTGTC
. : . : . : . : . : . :
JMSF007O21- TCCGGCACCAGC
JMSF010E05- TCCGGCACCAGCCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGNTGG
JMCP004E12+ TCCGGCACCAGC
JMFN028A12- TCCGGCACCAGCCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
rJMSF037E17+ TCCGGCACCAGGCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
rJMSF025B15+ CAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
____________________________________________________________
consensus TCCGGCACCAGCCCCGGCCCCAGACTTTGTGAACCTAACAGATTTGCTATCTGTTGCTGG
. : . : . : . : . : . :
JMSF010E05- ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGNTGTGGAAACTTTCCAAAA
JMFN028A12- ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
rJMSF037E17+ ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
rJMSF025B15+ ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
____________________________________________________________
consensus ACCTTTCCACACTTTCCTTAACTACATTGAGACCACCAAAGTTGTGGAAACTTTCCAAAA
. : . : . : . : . : . :
JMSF010E05- CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
JMFN028A12- CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
rJMSF037E17+ CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
rJMSF025B15+ CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
rJMSF007O21+ GTGCCCAAAGACGATGCCTTCTC
rJMSF008O21+ CCCAAAGACGATGCCTTCTC
____________________________________________________________
consensus CCAAGCCAACGATACTAAAGAAGGGCTTACTCTCTTCGTGCCCAAAGACGATGCCTTCTC
. : . : . : . : . : . :
JMSF010E05- CAAGAAA
JMFN028A12- CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF037E17+ CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF025B15+ CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF007O21+ CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
rJMSF008O21+ CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
____________________________________________________________
consensus CAAGAAAACGAAGCAGGCACTCTCGAATCTCACCGCTGACCAGCTCAAATCTGTGTTCCT
. : . : . : . : . : . :
JMFN028A12- TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF037E17+ TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF025B15+ TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF007O21+ TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
rJMSF008O21+ TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
____________________________________________________________
consensus TTACCACGCATTGCCACATTACTACTCGCTCTCCGACTTAAGAAACCTCAGCCAAGTTGG
. : . : . : . : . : . :
JMFN028A12- TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF037E17+ TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF025B15+ TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF007O21+ TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
rJMSF008O21+ TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
____________________________________________________________
consensus TCCGATCAGTACCTTTGCCGGTGGGCAACTTAGTGCCCTGAATTTCACTGATGTGTCTGG
. : . : . : . : . : . :
JMFN028A12- GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF037E17+ GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF025B15+ GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF007O21+ GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
rJMSF008O21+ GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
____________________________________________________________
consensus GACTGTGCACCTGAACTCGGGATGGACCAGTACCAAAATTAGCAGTGCAGTTCATGCAAC
. : . : . : . : . : . :
JMFN028A12- TTACCCCGTTGC
rJMSF037E17+ TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
rJMSF025B15+ TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
rJMSF007O21+ TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
rJMSF008O21+ TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
____________________________________________________________
consensus TTACCCCGTTGCCATTTATCAGGTCGACAAAGTTCTCCTCCCCGAAGCCATCTTCGGGAC
. : . : . : . : . : . :
rJMSF037E17+ AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
rJMSF025B15+ AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
rJMSF007O21+ AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
rJMSF008O21+ AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
____________________________________________________________
consensus AGATATCCCCCCCACCCCTGCACCCGCACCATCTCCAGACATTGCCCCGGCTGCAGATGC
. : . : . : . : . : . :
rJMSF037E17+ TCCAGCTTCTGACAAAGCCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
rJMSF025B15+ TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
rJMSF007O21+ TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
rJMSF008O21+ TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
____________________________________________________________
consensus TCCAGCTTCTGACAAAGGCATCAGTGGCGACTCAACGTCTCCAACTTCTTCACCTCCATC
. : . : . : . : . : . :
rJMSF037E17+ GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
rJMSF025B15+ GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
rJMSF007O21+ GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
rJMSF008O21+ GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
____________________________________________________________
consensus GTCTTCCCACAAGATTATGAGCTCGAGTCCTCTCAATCTGATCTTGGCAATCGTGGGTGG
. : . : . : . : . : . :
rJMSF037E17+ ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
rJMSF025B15+ ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
rJMSF007O21+ ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
rJMSF008O21+ ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
____________________________________________________________
consensus ATCTGCTGCCTTCTTCCTGTAAACTTTTGTCACACATTGAATTAAATTAATTTATGCTTT
. : . : . : . : . : . :
rJMSF037E17+ TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCAT
rJMSF025B15+ TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
rJMSF007O21+ TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
rJMSF008O21+ TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
____________________________________________________________
consensus TGTAAGAGGATATACCCCATTCAGATTGGTTCACTTGTTCCCCATTTTTTCTGTCATATA
. : . : . : . : . : . :
rJMSF025B15+ CAATATA
rJMSF007O21+ CAATATACTGGTCCTTCCATTTGGTGAGAATTGTATTGTATTATTCAGGTCGCTTCATTG
rJMSF008O21+ CAATATACTGGTCCTTCCATTTGGTGAGAATTGTATTGTATTATTCAGGTCGCTTCATTG
____________________________________________________________
consensus CAATATACTGGTCCTTCCATTTGGTGAGAATTGTATTGTATTATTCAGGTCGCTTCATTG