| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032E06 | Sequence | 573 | 001726 (4) | ref|XP_010087267.1| | 1e-105 | Putative E3 ubiquitin-protein ligase [Morus notabilis] gb|EXB28669.1| Putative E | 782 | 002768 (3) | ref|XP_006343859.1| | 5e-69 | PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Solanum tuberosum] |
| JMSF008F04 | Sequence | 355 | 001726 (4) | ref|XP_008341585.1| | 2e-43 | PREDICTED: putative E3 ubiquitin-protein ligase UBR7 isoform X2 [Malus domestic | 752 | 002768 (3) | ref|XP_006343859.1| | 6e-68 | PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Solanum tuberosum] |
| JMSF043M21 | Sequence | 628 | 001726 (4) | ref|XP_010087267.1| | 3e-107 | Putative E3 ubiquitin-protein ligase [Morus notabilis] gb|EXB28669.1| Putative E | 629 | 002768 (3) | ref|XP_006343859.1| | 4e-59 | PREDICTED: putative E3 ubiquitin-protein ligase UBR7-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMFF032E06+ CATC
____________________________________________________________
consensus CATC
. : . : . : . : . : . :
rJMFF032E06+ AGTCCCTCCGAAAAATGCAACAAGTTCTCTGAAGGAGAAAGAAGTGGCTGAGAACGTTCC
rJMSF008F04+ CTGAAGGAGAAAGAAGTGGCTGAGAACGTTCC
____________________________________________________________
consensus AGTCCCTCCGAAAAATGCAACAAGTTCTCTGAAGGAGAAAGAAGTGGCTGAGAACGTTCC
. : . : . : . : . : . :
rJMFF032E06+ TCTATCTTCAGAGGAGACTAACAATGCGAGTTCTTCACAGGATACTCTCATGACTAACGC
rJMSF008F04+ TCTATCTTCAGAGGAGACTAACAATGCGAGTTCTTCACAGGATACTCTCATGACTAACGC
____________________________________________________________
consensus TCTATCTTCAGAGGAGACTAACAATGCGAGTTCTTCACAGGATACTCTCATGACTAACGC
. : . : . : . : . : . :
rJMFF032E06+ TAGCAAAGAAGAGCTCTCGCTTGGAAAGGGTATCCACGAGGAAAACGATGGTAAAACTAC
rJMSF043M21+ ATCCACGAGGAAAACGATGGTAAAACTAC
rJMSF008F04+ TAGCAAAGAAGAGCTCTCGCTTGGAAAGGGTATCCACGAGGAAAACGATGGTAAAACTAC
____________________________________________________________
consensus TAGCAAAGAAGAGCTCTCGCTTGGAAAGGGTATCCACGAGGAAAACGATGGTAAAACTAC
. : . : . : . : . : . :
rJMFF032E06+ GACTACGAATCACTGCAACGGAGTTGCTGGCTCGAGTGAGAAATGTGTTCTTGGACTGAA
rJMSF043M21+ GACTACGAATCACTGCAACGGAGTTGCTGGCTCGAGTGAGAAATGTGTTCTTGGACTGAA
rJMSF008F04+ GACTACGAATCACTGCAACGGAGTTGCTGGCTCGGGTGAGAAATGTGTTCTTGGACTGAA
____________________________________________________________
consensus GACTACGAATCACTGCAACGGAGTTGCTGGCTCGAGTGAGAAATGTGTTCTTGGACTGAA
. : . : . : . : . : . :
rJMFF032E06+ TCTGAGTGAAGCCGTTGCTAAATTAGAGAAAAGCAAACCGATGTTTCTCTGCAAAAACTG
rJMSF043M21+ TCTGAGTGAAGCCGTTGCTAAATTAGAGAAAAGCAAACCGATGTTTCTCTGCAAAAACTG
rJMSF008F04+ TCTGAGTGAAGCCGTTGCTAAATTAGAGAAAAGCAAACCGATGTTTCTCTGCAAAAACTG
____________________________________________________________
consensus TCTGAGTGAAGCCGTTGCTAAATTAGAGAAAAGCAAACCGATGTTTCTCTGCAAAAACTG
. : . : . : . : . : . :
rJMFF032E06+ GAGGGAAGTCCTCTGCAAGTGCCAAAATTGTGTGGACTTCTACAACCAGAAAGGCGTCGG
rJMSF043M21+ GAGGGAAGTCCTCTGCAAGTGCCAAAATTGTGTGGACTTCTACAACCAGAAAGGCGTCGG
rJMSF008F04+ GAGGGAAGTCCTCTGCAAGTGCCAAAATTGTGTGGACTTCTACAACCAGAAAGGCGTCGG
____________________________________________________________
consensus GAGGGAAGTCCTCTGCAAGTGCCAAAATTGTGTGGACTTCTACAACCAGAAAGGCGTCGG
. : . : . : . : . : . :
rJMFF032E06+ CTACTTGCTCGACCCAGAGGACACAATTGCCGAGTACGAGGCAATGGCAAAGCAGAAAAG
rJMSF043M21+ CTACTTGCTCGACCCAGAGGACACAATTGCCGAGTACGAGGCAATGGCAAAGCAGAAAAG
rJMSF008F04+ CTACTTGCTCGACCCAGAGGACACAATTGCCGAGTACGAGGCAATGGCAAAGCAGAAAAG
____________________________________________________________
consensus CTACTTGCTCGACCCAGAGGACACAATTGCCGAGTACGAGGCAATGGCAAAGCAGAAAAG
. : . : . : . : . : . :
rJMFF032E06+ AGAGGAGTTGGAGCAGCAGCAGAGCTCCGAGTTCCTAAACAAACTTGGCCACATCGAGAA
rJMSF043M21+ AGAGGAGTTGGAGCAGCAGCAGAGCTCCGAGTTCCTAAACAAACTTGGCCACATCGAGAA
rJMSF008F04+ AGAGGAGTTGGAGCAGCAGCAGAGCTCCGAGTTCCTAAACAAACTTGGCCACATCGAGAA
____________________________________________________________
consensus AGAGGAGTTGGAGCAGCAGCAGAGCTCCGAGTTCCTAAACAAACTTGGCCACATCGAGAA
. : . : . : . : . : . :
rJMFF032E06+ AATCGAGATCTTGACTGGCATAGCTGACATTAAGAATGAGCTGAGCTCATACCTGGCGTC
rJMSF043M21+ AATCGAGATCTTGACTGGCATAGCTGACATTAAGAATGAGCTGAGCTCATACCTGGCGTC
rJMSF008F04+ AATCGAGATCTTGACTGGCATAGCTGACATTAAGAATGAGCTGAGCTCATACCTGGCGTC
____________________________________________________________
consensus AATCGAGATCTTGACTGGCATAGCTGACATTAAGAATGAGCTGAGCTCATACCTGGCGTC
. : . : . : . : . : . :
rJMFF032E06+ CTTCGATCCATCAAAGGCGGTTACCTCTGCTGACATTCACCAGGTTTTCGAGAATCTCGC
rJMSF043M21+ CTTCGATCCATCAAAGGCGGTTACCTCTGCTGACATTCACCAGGTTTTCGAGAATCTCGC
rJMSF008F04+ CTTCGATCCATCAAAGGCGGTTACCTCTGCTGACATTCACCAGGTTTTCGAGAATCTCGC
____________________________________________________________
consensus CTTCGATCCATCAAAGGCGGTTACCTCTGCTGACATTCACCAGGTTTTCGAGAATCTCGC
. : . : . : . : . : . :
rJMFF032E06+ TAAGAAACGCAAACGAATGGAGTAAGTTATTAAAAGGTGTGTTGTTAATGCAGAATTGGA
rJMSF043M21+ TAAGAAACGCAAACGAATGGAGTAAGTTATTAAAAGGTGTGTTGTTAATGCAGAATTGGA
rJMSF008F04+ TAAGAAACGCAAACGAATGGAGTAAGTTATTAAAAGGTGTGTTGTTAATGCAGAATTGGA
____________________________________________________________
consensus TAAGAAACGCAAACGAATGGAGTAAGTTATTAAAAGGTGTGTTGTTAATGCAGAATTGGA
. : . : . : . : . : . :
rJMFF032E06+ TCATGACTAGTGTAGTTGTGTTGGTGTTCAATTTGTTAGACCTCCTTGAATGGATGTACA
rJMSF043M21+ TCATGACTAGTGTAGTTGTGTTGGTGTTCAATTTGTTAGACCTCCTTGAATGGATGTACA
rJMSF008F04+ TCATGACTAGTGTAGTTGTGTTGGTGTTCAATTTGTTAGACCTCCTTGAATGGATGTACA
____________________________________________________________
consensus TCATGACTAGTGTAGTTGTGTTGGTGTTCAATTTGTTAGACCTCCTTGAATGGATGTACA
. : . : . : . : . : . :
rJMFF032E06+ TCTAAACTATCTAAATGCTTATATAAATATTATTATGTAGTTATGA
rJMSF043M21+ TCTAAACTATCTAAATGCTTATATAAATATTATTATGTAGTTATGA
rJMSF008F04+ TCTAAACTATCTAAATGCTTATATAAATATTATTATGTAGTTATGATAAAAGAACAAACA
____________________________________________________________
consensus TCTAAACTATCTAAATGCTTATATAAATATTATTATGTAGTTATGATAAAAGAACAAACA