| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN009H12 | Sequence | 460 | 002764 (8) | gb|ADB03785.1| | 3e-11 | deleted in split hand/splt foot protein 1 [Ipomoea batatas] | |||||
| JMFN035I07 | Sequence | 148 | 002764 (8) | ||||||||
| JMSF007K06 | Sequence | 420 | 002764 (8) | gb|ADB03785.1| | 1e-11 | deleted in split hand/splt foot protein 1 [Ipomoea batatas] | 434 | 002764 (8) | gb|ADB03785.1| | 2e-11 | deleted in split hand/splt foot protein 1 [Ipomoea batatas] |
| JMSF035I12 | Sequence | 495 | 002764 (8) | gb|ADB03785.1| | 2e-11 | deleted in split hand/splt foot protein 1 [Ipomoea batatas] | 436 | 002764 (8) | gb|ADB03785.1| | 2e-11 | deleted in split hand/splt foot protein 1 [Ipomoea batatas] |
| JMSF048H17 | Sequence | 486 | 002764 (8) | gb|ADB03785.1| | 2e-11 | deleted in split hand/splt foot protein 1 [Ipomoea batatas] | 430 | 002764 (8) | gb|ADB03785.1| | 2e-11 | deleted in split hand/splt foot protein 1 [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
JMSF048H17+ GACTA
JMFN009H12+ GACTA
JMSF035I12+ TTTTTNTTNNGACTA
____________________________________________________________
consensus TTTTTNTTNNGACTA
. : . : . : . : . : . :
JMSF048H17+ AAAAAAGTCAGAACTTGTAACCATATTGATAAAAACAGTGAACAGAAAGTTGAAGGTCCA
JMFN009H12+ AAAAAAGTCAGAACTTGTAACCATATTGATAAAAACAGTGAACAGAAAGTTGAAGGTCCA
rJMSF048H17- ACAGAAAGTTGAAGGTCCA
JMSF035I12+ AAAAAAGTCAGAACTTGTAACCATATTGATAAAAACAGTGAACAGAAAGTTGAAGGTCCA
rJMSF035I12- GAAAGTTGAAGGTCCA
rJMSF007K06- AAGTTGAAGGTCCA
____________________________________________________________
consensus AAAAAAGTCAGAACTTGTAACCATATTGATAAAAACAGTGAACAGAAAGTTGAAGGTCCA
. : . : . : . : . : . :
JMSF048H17+ AGCATTCAGCAAGAATAAAGTGGAGTACAATATGTGAGGAAGGCATCAATTCTAGAGGGA
JMFN009H12+ AGCATTCAGCAAGAATAAAGTGGAGTACAATATATGAGGAAGGCATCAATTCTAGAGGGA
rJMSF048H17- AGCATTCAGCAAGAATAAAGTGGAGTACAATATGTGAGGAAGGCATCAATTCTAGAGGGA
JMSF035I12+ AGCATTCAGCAAGAATAAAGTGGAGTACAATATATGAGGAAGGCATCAATTCTAGAGGGA
rJMSF035I12- AGCATTCAGCAAGAATAAAGTGGAGTACAATATATGAGGAAGGCATCAATTCTAGAGGGA
JMSF007K06+ AGCATTCAGCAAGAATAAAGTGGAGTACAATATATGAGGAAGGCATCAATTCTAGAGGGA
rJMSF007K06- AGCATTCAGCAAGAATAAAGTGGAGTACAATATATGAGGAAGGCATCAATTCTAGAGGGA
____________________________________________________________
consensus AGCATTCAGCAAGAATAAAGTGGAGTACAATATATGAGGAAGGCATCAATTCTAGAGGGA
. : . : . : . : . : . :
JMSF048H17+ CATGCAATGATGCCAAAGTATTACGGAGTATTAGCTTAGTCCTTCTTCTCAGTGCTGCTT
JMFN009H12+ CATGCAATGATGCCAAAGTATTACGGAGTATTAGCTTAGTCCTTCTTCTCAGTGCTGCTT
rJMSF048H17- CATGCAATGATGCCAAAGTATTACGGAGTATTAGCTTAGTCCTTCTTCTCAGTGCTGCTT
JMSF035I12+ CATGCAATGATGCCAAAGTATTACGGAGTATTAGCTTAGTCCTTCTTCTCAGTGCTGCTT
rJMSF035I12- CATGCAATGATGCCAAAGTATTACGGAGTATTAGCTTAGTCCTTCTTCTCAGTGCTGCTT
JMSF007K06+ CATGCAATGATGCCAAAGTATTACGGAGTATTAGCTTAGTCCTTCTTCTCAGTGCTGCTT
rJMSF007K06- CATGCAATGATGCCAAAGTATTACGGAGTATTAGCTTAGTCCTTCTTCTCAGTGCTGCTT
____________________________________________________________
consensus CATGCAATGATGCCAAAGTATTACGGAGTATTAGCTTAGTCCTTCTTCTCAGTGCTGCTT
. : . : . : . : . : . :
JMSF048H17+ TCCAATTCCTTTCTAAGTTGCAGGGAGAAGTCGTCATTGACATCATCATCATCCCAGTCA
JMFN009H12+ TCCAATTCCTTTCTAAGTTGCAGGGAGAAGTCGTCATTGACATCATCATCATCCCAGTCA
rJMSF048H17- TCCAATTCCTTTCTAAGTTGCAGGGAGAAGTCGTCATTGACATCATCATCATCCCAGTCA
JMSF035I12+ TCCAATTCCTTTCTAAGTTGCAGGGAGAAGTCGTCATTGACATCATCATCATCCCAGTCA
rJMSF035I12- TCCAATTCCTTTCTAAGTTGCAGGGAGAAGTCGTCATTGACATCATCATCATCCCAGTCA
JMSF007K06+ TCCAATTCCTTTCTAAGTTGCAGGGAGAAGTCGTCATTGACATCATCATCATCCCAGTCA
rJMSF007K06- TCCAATTCCTTTCTAAGTTGCAGGGAGAAGTCGTCATTGACATCATCATCATCCCAGTCA
____________________________________________________________
consensus TCCAATTCCTTTCTAAGTTGCAGGGAGAAGTCGTCATTGACATCATCATCATCCCAGTCA
. : . : . : . : . : . :
JMSF048H17+ TCTTCCCACTGCTGGGTTACTTCTTTCCCCTCCTCTTTGTCCTCCCACTCTTGGTCAATT
JMFN009H12+ TCTTCCCACTGCTGGGTTACTTCTTTCCCCTCCTCTTTGTCCTCCCACTCTTGGTCAATT
rJMSF048H17- TCTTCCCACTGCTGGGTTACTTCTTTCCCCTCCTCTTTGTCCTCCCACTCTTGGTCAATT
JMSF035I12+ TCTTCCCACTGCTGGGTTACTTCTTTCCCCTCCTCTTTGTCCTCCCACTCTTGGTCAATT
rJMSF035I12- TCTTCCCACTGCTGGGTTACTTCTTTCCCCTCCTCTTTGTCCTCCCACTCTTGGTCAATT
JMSF007K06+ TCTTCCCACTGCTGGGTTACTTCTTTCCCCTCCTCTTTGTCCTCCCACTCTTGGTCAATT
JMFN035I07+ CTCCCACTCTTGGTCAATT
rJMSF007K06- TCTTCCCACTGCTGGGTTACTTCTTTCCCCTCCTCTTTGTCCTCCCACTCTTGGTCAATT
____________________________________________________________
consensus TCTTCCCACTGCTGGGTTACTTCTTTCCCCTCCTCTTTGTCCTCCCACTCTTGGTCAATT
. : . : . : . : . : . :
JMSF048H17+ TCAAACTCCTCAAACTCGTCGTCATCTTCGAAGAGATCCATTTTCACGTCTTCAGGCGCC
JMFN009H12+ TCAAACTCCTCAAACTCGTCGTCATCTTCGAAGAGATCCATTTTCACGTCTTCAGGCGCC
rJMSF048H17- TCAAACTCCTCAAACTCGTCGTCATCTTCGAAGAGATCCATTTTCACGTCTTCAGGCGCC
JMSF035I12+ TCAAACTCCTCAAACTCGTCGTCATCTTCGAAGAGATCCATTTTCACGTCTTCAGGCGCC
rJMSF035I12- TCAAACTCCTCAAACTCGTCGTCATCTTCGAAGAGATCCATTTTCACGTCTTCAGGCGCC
JMSF007K06+ TCAAACTCCTCAAACTCGTCGTCATCTTCGAAGAGATCCATTTTCACGTCTTCAGGCGCC
JMFN035I07+ TCAAACTCCTCAAACTCGTCGTCATCTTCGAAGAGATCCATTTTCACGTCTTCAGGCGCC
rJMSF007K06- TCAAACTCCTCAAACTCGTCGTCATCTTCGAAGAGATCCATTTTCACGTCTTCAGGCGCC
____________________________________________________________
consensus TCAAACTCCTCAAACTCGTCGTCATCTTCGAAGAGATCCATTTTCACGTCTTCAGGCGCC
. : . : . : . : . : . :
JMSF048H17+ GGTTTTGGTTGCTCGGTTGCCATTCTACAGTGAATCCCTAATCGCACTGCTCTGCCACAC
JMFN009H12+ GGTTTTGGTTGCTCGGTTGCCATTCTACAGTGAATCCCTAATCGCACTGCTCTGCCACAC
rJMSF048H17- GGTTTTGGTTGCTCGGTTGCCATTCTACAGTGAATCCCTAATCGCACTGCTCTGCCACAC
JMSF035I12+ GGTTTTGGTTGCTCGGTTGCCATTCTACAGTGAATCCCTAATCGCACTGCTCTGCCACAC
rJMSF035I12- GGTTTTGGTTGCTCGGTTGCCATTCTACAGTGAATCCCTAATCGCACTGCTCTGCCACAC
JMSF007K06+ GGTTTTGGTTGCTCGGTTGCCATTCTACAGTGAATCCCTAATCGCACTGCTCTGCCACAC
JMFN035I07+ GGTTTTGGTTGCTCGGTTGCCATTCTACAGTGAATCCCTAATCGCACTGCT
rJMSF007K06- GGTTTTGGTTGCTCGGTTGCCATTCTACAGTGAATCCCTAATCGCACTGCTCTGCCACAC
____________________________________________________________
consensus GGTTTTGGTTGCTCGGTTGCCATTCTACAGTGAATCCCTAATCGCACTGCTCTGCCACAC
. : . : . : . : . : . :
JMSF048H17+ AAGCGATCACGGAGAGATTTAGAGAAGGGTTCTTCGCTTCGGAATCCTG
JMFN009H12+ AAGCGATCACGGAGAGATTTAGAGAAGGGTTCTTC
rJMSF048H17- AAGCGATCACGGAGAGATTTAGAGAAGGGTTCTTCGCTTCGGAATCCTG
JMSF035I12+ AAGCGATCACGGAGAGATTTAGAGAAGGGTTCTTCGCTTCGGAATCCTGTAAAAAAC
rJMSF035I12- AAGCGATCACGGAGAGATTTAGAGAAGGGTTCTTCGCTTCGGAATCCTGTAAAAAAC
JMSF007K06+ AAGCGATCACGGAGAGATTTAGAGAAGGGTTCTTCGCTTCGGAATCCTGTAAAAAAC
rJMSF007K06- AAGCGATCACGGAGAGATTTAGAGAAGGGTTCTTCGCTTCGGAATCCTGTAAAAAACCTC
____________________________________________________________
consensus AAGCGATCACGGAGAGATTTAGAGAAGGGTTCTTCGCTTCGGAATCCTGTAAAAAACCTC