Contig 002759:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004K24Sequence267013223 (3)ref|XP_009768551.1|2e-05PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana370002759 (2)
JMSF045F05Sequence812013223 (3)ref|XP_009768551.1|3e-122PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Nicotiana755002759 (2)ref|XP_010271641.1|8e-102PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Nelu

Alignment

This contig is upended


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rJMSF045F05+                                                     CGTATGGCAGGACGTAT
                      ____________________________________________________________
consensus                                                        CGTATGGCAGGACGTAT
 
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rJMSF045F05+          TTTAGGGATGGGAGATGTTTTGTCTTTTGTGGAAAAGGCACAAGAAGTTATGCGCCAAGA
                      ____________________________________________________________
consensus             TTTAGGGATGGGAGATGTTTTGTCTTTTGTGGAAAAGGCACAAGAAGTTATGCGCCAAGA
 
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rJMSF045F05+          AGATACGGAAGAGCTGCAGAAGAAGATCATGAGTGCTAAATTTGACTTCAATGACTTCCT
                      ____________________________________________________________
consensus             AGATACGGAAGAGCTGCAGAAGAAGATCATGAGTGCTAAATTTGACTTCAATGACTTCCT
 
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rJMSF045F05+          CAAGCAAACTCGTATGGTTGCACGGATGGGTTCCATGTCTCGTATTATCGGAATGGTTCC
                      ____________________________________________________________
consensus             CAAGCAAACTCGTATGGTTGCACGGATGGGTTCCATGTCTCGTATTATCGGAATGGTTCC
 
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rJMSF045F05+          TGGGATGGCAAAGGTAACTCCTGCACAAATTCGAGATGCTGAGAAGAACTTAAAAGAAGT
                      ____________________________________________________________
consensus             TGGGATGGCAAAGGTAACTCCTGCACAAATTCGAGATGCTGAGAAGAACTTAAAAGAAGT
 
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rJMSF045F05+          GGAATCAATAATAGAAGCAATGACCCCGGAGGAGAGGGAGCAGCCTGAGCTATTGGCAGA
                      ____________________________________________________________
consensus             GGAATCAATAATAGAAGCAATGACCCCGGAGGAGAGGGAGCAGCCTGAGCTATTGGCAGA
 
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rJMSF045F05+          ATCTCCCGACAGGAGGAAACGTGTTGCTCAAGATTCGGGAAAAACTGAAGAGCAGGTGAG
                      ____________________________________________________________
consensus             ATCTCCCGACAGGAGGAAACGTGTTGCTCAAGATTCGGGAAAAACTGAAGAGCAGGTGAG
 
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rJMSF045F05+          TCAACTTGTCGCTCAGCTCTTCCAGATGCGTGTGCGTATGAAGAATTTGATGGGTATGAT
                      ____________________________________________________________
consensus             TCAACTTGTCGCTCAGCTCTTCCAGATGCGTGTGCGTATGAAGAATTTGATGGGTATGAT
 
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rJMSF045F05+          GGAAAGCCAATCCATTCCCGCACTAAGCAATCTTGAAGAGTCCGTGAAATCGCAACGGAA
rJMSF004K24+                                                            CGCAACGGAA
                      ____________________________________________________________
consensus             GGAAAGCCAATCCATTCCCGCACTAAGCAATCTTGAAGAGTCCGTGAAATCGCAACGGAA
 
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rJMSF045F05+          GGCCCCTCCTGGAACTGCAAGAAGAAAGAGGAGATCTGGAACAAGGATCCAGTTTGCCCA
rJMSF004K24+          GGCCCNTCCTGGAACTGCAAGAAGAAAGAGGAGATCTGGAACAAGGATCCAGTTTGCCCA
                      ____________________________________________________________
consensus             GGCCCCTCCTGGAACTGCAAGAAGAAAGAGGAGATCTGGAACAAGGATCCAGTTTGCCCA
 
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rJMSF045F05+          GAACTCCATGGCATCTACAATCACAAAGAGTTCTGCGTAGCTTTGAGCAGCACTACTTTT
rJMSF004K24+          GAACTCCATGGCATCTACAATCACAAAGAGTTCTGCGTAGCTTTGAGCAGCACTACTTNT
                      ____________________________________________________________
consensus             GAACTCCATGGCATCTACAATCACAAAGAGTTCTGCGTAGCTTTGAGCAGCACTACTTTT
 
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rJMSF045F05+          GCAGTTTAACTGGACATGCTATATCCAGTGCTTGCACAAACAAGTGTTCCTCGGTTTAAA
rJMSF004K24+          GCAGTTTAACTGGACATGCTATATCCAGTGCTTGCACAAACAAGTGTTCCTCGGTTTAAA
                      ____________________________________________________________
consensus             GCAGTTTAACTGGACATGCTATATCCAGTGCTTGCACAAACAAGTGTTCCTCGGTTTAAA
 
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rJMSF045F05+          GAGGTTTCCGCGTACATTTCGTGTGACATTATATTTTTTGTACATTTAAGGGAAATGAGA
rJMSF004K24+          GAGGTTTCCGCGTACATTTCGTGTGACATTATATTTTTTGTACATTTAAGGGAAATGAGA
                      ____________________________________________________________
consensus             GAGGTTTCCGCGTACATTTCGTGTGACATTATATTTTTTGTACATTTAAGGGAAATGAGA
 
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rJMSF045F05+          AGTGAACAATAGATCTCT                                          
rJMSF004K24+          AGTGAACAATAGATCTCTTGTTTAAGTCACTGGGTTTTACTTTCTGCTGGCTAGATACAA
                      ____________________________________________________________
consensus             AGTGAACAATAGATCTCTTGTTTAAGTCACTGGGTTTTACTTTCTGCTGGCTAGATACAA
 
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rJMSF004K24+          GTTTNTCAGCTTTCACTATATAAGTGTTTGGTTAATTAGCTTTTTGTANTCCAAAATGTA
                      ____________________________________________________________
consensus             GTTTNTCAGCTTTCACTATATAAGTGTTTGGTTAATTAGCTTTTTGTANTCCAAAATGTA