| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002P01 | Sequence | 341 | 003763 (6) | ref|XP_006360347.1| | 8e-27 | PREDICTED: pleiotropic drug resistance protein 1-like [Solanum tuberosum] | 687 | 002754 (3) | ref|XP_004247841.1| | 9e-76 | PREDICTED: pleiotropic drug resistance protein 1 [Solanum lycopersicum] |
| JMSF008D03 | Sequence | 286 | 022042 | ref|XP_009609638.1| | 1e-50 | PREDICTED: pleiotropic drug resistance protein 1-like, partial [Nicotiana tomen | 774 | 002754 (3) | ref|XP_004247841.1| | 2e-94 | PREDICTED: pleiotropic drug resistance protein 1 [Solanum lycopersicum] |
| JMSF020A12 | Sequence | 653 | 003763 (6) | ref|XP_009757475.1| | 2e-72 | PREDICTED: pleiotropic drug resistance protein 1-like, partial [Nicotiana sylve | 750 | 002754 (3) | ref|XP_004247841.1| | 8e-90 | PREDICTED: pleiotropic drug resistance protein 1 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF020A12+ TTCAACCTGTGGTGTCGGTGGAACGGACTGTGT
rJMSF008D03+ TGGGTGTTCAAAACTCGGCATCTGTTCAACCTGTGGTGTCGGTGGAACGGACTGTGT
____________________________________________________________
consensus TGGGTGTTCAAAACTCGGCATCTGTTCAACCTGTGGTGTCGGTGGAACGGACTGTGT
. : . : . : . : . : . :
rJMSF020A12+ TCTACCGGGAAAAAGCCGCCGGAATGTTTTCTGCCTTACCATATGCCTTTGCCCAGGTGG
rJMSF008D03+ TCTACCGGGAAAAAGCCGCCGGAATGTTTTCTGCCTTACCATATGCCTTTGCCCAGGTGG
rJMSF002P01+ CCTTACCATATGCCTTTGCCCAGGTGG
____________________________________________________________
consensus TCTACCGGGAAAAAGCCGCCGGAATGTTTTCTGCCTTACCATATGCCTTTGCCCAGGTGG
. : . : . : . : . : . :
rJMSF020A12+ CGATTGAGATCCCTTACGTGTTTGCCCAATCTGCAGTTTACGGTTTGATCGTTTATGCGA
rJMSF008D03+ CGATTGAGATCCCTTACGTGTTTGCCCAATCTGCAGTTTACGGTTTGATCGTTTATGCGA
rJMSF002P01+ CGATTGAGATCCCTTACGTGTTTGCCCAATCTGCAGTTTACGGTTTGATCGTTTATGCGA
____________________________________________________________
consensus CGATTGAGATCCCTTACGTGTTTGCCCAATCTGCAGTTTACGGTTTGATCGTTTATGCGA
. : . : . : . : . : . :
rJMSF020A12+ TGATCGGATTCGAATGGGACGCCGGAAAATTCTTCTGGTACTTGTTCGTCATGTATATGA
rJMSF008D03+ TGATCGGATTCGAATGGGACGCCGGAAAATTCTTCTGGTACTTGTTCGTCATGTATATGA
rJMSF002P01+ TGATCGGATTCGAATGGGACGCCGGAAAATTCTTCTGGTACTTGTTCGTCATGTATATGA
____________________________________________________________
consensus TGATCGGATTCGAATGGGACGCCGGAAAATTCTTCTGGTACTTGTTCGTCATGTATATGA
. : . : . : . : . : . :
rJMSF020A12+ CCTTGTTATACTTCACTTATTACGGCATGATGTCTGTGGCCATCACCCCCAACCAAAACG
rJMSF008D03+ CCTTGTTATACTTCACTTATTACGGCATGATGTCTGTGGCCATCACCCCCAACCAAAACG
rJMSF002P01+ CCTTGTTATACTTCACTTATTACGGCATGATGTCTGTGGCCATCACCCCCAACCAAAACG
____________________________________________________________
consensus CCTTGTTATACTTCACTTATTACGGCATGATGTCTGTGGCCATCACCCCCAACCAAAACG
. : . : . : . : . : . :
rJMSF020A12+ TCGCTTCCATTGTCTCTGCTTTCTTCTATGGAATCTGGAACGTCTTCTCCGGCTTCATGA
rJMSF008D03+ TCGCTTCCATTGTCTCTGCTTTCTTCTATGGAATCTGGAACGTCTTCTCCGGCTTCATGA
rJMSF002P01+ TCGCTTCCATTGTCTCTGCTTTCTTCTATGGAATCTGGAACGTCTTCTCCGGCTTCATGA
____________________________________________________________
consensus TCGCTTCCATTGTCTCTGCTTTCTTCTATGGAATCTGGAACGTCTTCTCCGGCTTCATGA
. : . : . : . : . : . :
rJMSF020A12+ TCCCAAGACCTAGGATGCCGATCTGGTGGAGATGGTATTTCTGGGCATGCCCAGTTTCAT
rJMSF008D03+ TCCCAAGACCTAGGATGCCGATCTGGTGGAGATGGTATTTCTGGGCATGCCCAGTTTCAT
rJMSF002P01+ TCCCAAGACCTAGGATGCCGATCTGGTGGAGATGGTATTTCTGGGCATGCCCAGTTTCAT
____________________________________________________________
consensus TCCCAAGACCTAGGATGCCGATCTGGTGGAGATGGTATTTCTGGGCATGCCCAGTTTCAT
. : . : . : . : . : . :
rJMSF020A12+ GGACTTTGTACGGTTTGGTTGCCTCGCAATTTGGAGACCTGGAGAGTCGAGTCATCGACG
rJMSF008D03+ GGACTTTGTACGGTTTGGTTGCCTCGCAATTTGGAGACCTGGAGAGTCGAGTCATCGACG
rJMSF002P01+ GGACTTTGTACGGTTTGGTTGCCTCGCAATTTGGAGACCTGGAGAGTCGAGTCATCGACG
____________________________________________________________
consensus GGACTTTGTACGGTTTGGTTGCCTCGCAATTTGGAGACCTGGAGAGTCGAGTCATCGACG
. : . : . : . : . : . :
rJMSF020A12+ CCGACCAAACTGTGAAGGAGCTCTTGGATGATTTCTTGGGGTTCAAACATAGTTTCCTGG
rJMSF008D03+ CCGACCAAACTGTGAAGGAGCTCTTGGATGATTTCTTGGGGTTCAAACATAGTTTCCTGG
rJMSF002P01+ CCGACCAAACTGTGAAGGAGCTCTTGGATGATTTCTTGGGGTTCAAACATAGTTTCCTGG
____________________________________________________________
consensus CCGACCAAACTGTGAAGGAGCTCTTGGATGATTTCTTGGGGTTCAAACATAGTTTCCTGG
. : . : . : . : . : . :
rJMSF020A12+ GAGTGGTGGCCGCCGTGCTGGTCGTTTTCCCGGTTATGTTCGCCGTCACCTTCGCGTACG
rJMSF008D03+ GAGTGGTGGCCGCCGTGCTGGTCGTTTTCCCGGTTATGTTCGCCGTCACCTTCGCGTACG
rJMSF002P01+ GAGTGGTGGCCGCCGTGCTGGTCGTTTTCCCGGTTATGTTCGCCGTCACCTTCGCGTACG
____________________________________________________________
consensus GAGTGGTGGCCGCCGTGCTGGTCGTTTTCCCGGTTATGTTCGCCGTCACCTTCGCGTACG
. : . : . : . : . : . :
rJMSF020A12+ CCATCAAGGTGTTGAACTTCCAGAAGAGATAAAAACCTGCGCCTCAATTATATTATAGTT
rJMSF008D03+ CCATCAAGGTGTTGAACTTCCAGAAGAGATAAAAACCTGCGCCTCAATTATATTATAGTT
rJMSF002P01+ CCATCAAGGTGTTGAACTTCCAGAAGAGATAAAAACCTGCGCCTCAATTATATTATAGTT
____________________________________________________________
consensus CCATCAAGGTGTTGAACTTCCAGAAGAGATAAAAACCTGCGCCTCAATTATATTATAGTT
. : . : . : . : . : . :
rJMSF020A12+ GTACTATGTATATGATACGCCTTCATCCTTAAGTTTATTTTTAATTTGCTCTTTATTATG
rJMSF008D03+ GTACTATGTATATGATACGCCTTCACCCTTAAGTTTATTTTTAATTTGCTCTTTATTATG
rJMSF002P01+ GTACTATGTATATGATACGCCTTCATCCTTAAGTTTATTTTTAANTTGCTCTTTATNATG
____________________________________________________________
consensus GTACTATGTATATGATACGCCTTCATCCTTAAGTTTATTTTTAATTTGCTCTTTATTATG
. : . : . : . : . : . :
rJMSF020A12+ TAATATTTGACTTTGAGAATTTGTTTCTACATTCTTTTTTGTCCAATTAAATGTG
rJMSF008D03+ TAATATTTGACTTTGAGAATTTGTTTCTACATTCTTTTTTGTCCAATTAAATGTG
rJMSF002P01+ TAATANTTGACTNTGAGAANTTGNTTNTACATTCTTTNTTGNCCAATTAAATGTGNGTAA
____________________________________________________________
consensus TAATATTTGACTTTGAGAATTTGTTTCTACATTCTTTTTTGTCCAATTAAATGTGNGTAA