| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP016C08 | Sequence | 248 | 013786 (2) | gb|KCW62479.1| | 6e-41 | hypothetical protein EUGRSUZ_H05117 [Eucalyptus grandis] gb|KCW62480.1| hypothet | 396 | 002753 (13) | ref|XP_009797884.1| | 2e-58 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nicotiana sylvestris] |
| JMCP016D04 | Sequence | 293 | 002753 (13) | ref|XP_002458821.1| | 1e-05 | hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor] gb|ACF84035.1| unkno | |||||
| JMFF019B21 | Sequence | 572 | 002753 (13) | ref|XP_011042848.1| | 3e-59 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Populus euphratica] | 557 | 002753 (13) | ref|XP_011042848.1| | 2e-59 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Populus euphratica] |
| JMFF040B23 | Sequence | 527 | 002753 (13) | ref|XP_011042848.1| | 2e-59 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Populus euphratica] | 502 | 002753 (13) | ref|XP_011042848.1| | 1e-59 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Populus euphratica] |
| JMFN012A02 | Sequence | 611 | 002753 (13) | ref|XP_011042848.1| | 9e-58 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Populus euphratica] | |||||
| JMFN028D16 | Sequence | 557 | 002753 (13) | ref|XP_009797884.1| | 3e-58 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nicotiana sylvestris] | |||||
| JMFS056F05 | Sequence | 485 | 002753 (13) | ref|XP_009797884.1| | 8e-59 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Nicotiana sylvestris] | |||||
| JMSF002I19 | Sequence | 331 | 002753 (13) | ref|XP_011042848.1| | 1e-60 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Populus euphratica] | 462 | 002753 (13) | ref|XP_011042848.1| | 8e-60 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Populus euphratica] |
| JMSF002L19 | Sequence | 336 | 002753 (13) | ref|XP_011042848.1| | 6e-60 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Populus euphratica] | 540 | 002753 (13) | ref|XP_011042848.1| | 1e-59 | PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Populus euphratica] |
This contig is upended
. : . : . : . : . : . :
JMFN012A02+ TAACAAACAAACACGAATATTCGGTTCGT
____________________________________________________________
consensus TAACAAACAAACACGAATATTCGGTTCGT
. : . : . : . : . : . :
JMFN028D16+ GAGAGAAGGCCTTCCTTCCATTCATACGCACGCAATAAG
JMFN012A02+ TAACAGCTGTACTTGAGAGTTGAGAGAAGGCCTTCCTTCCATTCATACTCACGCAATAAG
rJMCP016D04+ TCCATTCATAgaCACGCAATAAG
JMFF019B21+ GAGAGAAGGCCTTCCTTCCATTCATACTCACGCAATAAG
rJMFF019B21- TTCATACTCACGCAATAAG
____________________________________________________________
consensus TAACAGCTGTACTTGAGAGTTGAGAGAAGGCCTTCCTTCCATTCATACTCACGCAATAAG
. : . : . : . : . : . :
JMFN028D16+ TTCAAATTTGTACTGTAATACTCGGGCATTTTAAGTTGTAATAAGGTGCACTTAACTGTT
JMFN012A02+ TTCAAATTTGTACTGTAATACTCGGGCATTTTAAGTTGTAATAAGGTGCACTTAACTGTT
rJMCP016D04+ TTCAAATTTGTtgacaAATAgagccGCATTTTAAGaacTAATAAGcaGCtCTTAACacaa
JMFF019B21+ TTCAAATTTGTACTGTAATACTCGGGCATTTTAAGTTGTAATAAGGTGCACTTAACTGTT
rJMFF019B21- TTCAAATTTGTACTGTAATACTCGGGCATTTTAAGTTGTAATAAGGTGCACTTAACTGTT
JMFF040B23+ TTTGTACTGTAATACTCGGGCATTTTAAGTTGTAATAAGGTGCACTTAACTGTT
rJMFF040B23- AGTTGTAATAAGGTGCACTTAACTGTT
JMFS056F05+ GTACTGTAATACTCGGGCATTTTAAGTTGTAATAAGGTGCACTTAACTGTT
rJMSF002L19- AATTTGTACTGTAATACTCGGGCATTTTAAGTTGTAATAAGGTGCACTTAACTGTT
____________________________________________________________
consensus TTCAAATTTGTACTGTAATACTCGGGCATTTTAAGTTGTAATAAGGTGCACTTAACTGTT
. : . : . : . : . : . :
JMFN028D16+ ACACAAATAATAGTCGTTCCTACAGACTCATAATATCCACA-GTAACAATTTTGAACAAG
JMFN012A02+ ACACAAATAATAGTCGTTCCTACAGACTCATAATATCCACA-GTAACAATTTTGAACAAG
rJMCP016D04+ tgtCAttattatGaCcTTggaACAGACTCATAATATggACA-GTAACAATTTTGAACAAG
JMFF019B21+ ACACAAATAATAGTCGTTCCTACAGACTCATAATATCCACA-GTAACAATTTTGAACAAG
rJMFF019B21- ACACAAATAATAGTCGTTCCTACAGACTCATAATATCCACA-GTAACAATTTTGAACAAG
JMFF040B23+ ACACAAATAATAGTCGTTCCTACAGACTCATAATATCCACA-GTAACAATTTTGAACAAG
rJMFF040B23- ACACAAATAATAGTCGTTCCTACAGACTCATAATATCCACA-GTAACAATTTTGAACAAG
JMFS056F05+ ACACAAATAATAGTCGTTCCTACAGACTCATAATATCCACA-GTAACAATTTTGAACAAG
rJMSF002I19- ATAGTCGTTCCTACAGACTCATAATATCCACAGGTAACAATTTTGAACAAG
rJMCP016C08+ A-GTAACAATaaTcttCAAc
rJMSF002L19- ACACAAATAATAGTCGTTCCTACAGACTCATAATATCCACA-GTAACAATTTTGAACAAG
____________________________________________________________
consensus ACACAAATAATAGTCGTTCCTACAGACTCATAATATCCACA-GTAACAATTTTGAACAAG
. : . : . : . : . : . :
JMFN028D16+ GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
JMFN012A02+ GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
rJMCP016D04+ GCAAAAggAAGCAtcggattAaaggaagactAATAGTACATCATagcCACTAggACAGCA
JMFF019B21+ GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
rJMFF019B21- GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
JMFF040B23+ GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
rJMFF040B23- GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
JMFS056F05+ GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
rJMSF002I19- GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
rJMCP016C08+ cgAAttggtAGCAAGggatttaaggaagactAATAcatgtagATagcCtgaAggACtGgA
rJMSF002L19- GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
____________________________________________________________
consensus GCAAAACCAAGCAAGCCTAAATTCCTTCTGAAATAGTACATCATTCGCACTACCACAGCA
. : . : . : . : . : . :
JMFN028D16+ ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
JMFN012A02+ ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
rJMCP016D04+ ATACCtaaaCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
JMFF019B21+ ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
rJMFF019B21- ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
JMFF040B23+ ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
rJMFF040B23- ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
JMFS056F05+ ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
rJMSF002I19- ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
rJMCP016C08+ taACCtaaaCTaacGTCAATCtacgAGTCCGCAGAcctGGcctgACCAGTATatgACCAT
JMSF002L19+ CAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
JMSF002I19+ CATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
rJMSF002L19- ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
____________________________________________________________
consensus ATACCATTTCTTTGGTCAATCATGCAGTCCGCAGAGGAGGGGACACCAGTATTACACCAT
. : . : . : . : . : . :
JMFN028D16+ CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
JMFN012A02+ CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
rJMCP016D04+ CTCCAgcAACAAAAAGGAAAGGAATGGTCCG
JMFF019B21+ CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
rJMFF019B21- CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
JMFF040B23+ CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
rJMFF040B23- CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
JMFS056F05+ CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
rJMSF002I19- CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
rJMCP016C08+ gaCCACGAACAAAAAGGAAAGGAtTGGTCCcaaagcatGaCgatACTATCTggTCtaATG
JMSF002L19+ CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
JMSF002I19+ CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
rJMSF002L19- CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
____________________________________________________________
consensus CTCCACGAACAAAAAGGAAAGGAATGGTCCGTTTTGTAGTCCTAACTATCTCCTCATATG
. : . : . : . : . : . :
JMFN028D16+ TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
JMFN012A02+ TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
JMFF019B21+ TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
rJMFF019B21- TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
JMFF040B23+ TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
rJMFF040B23- TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
JMFS056F05+ TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
rJMSF002I19- TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
rJMCP016C08+ TTTCtagtTCAATCTCAACAcaacagtgAtaaagaagAACtagACgtAGAATgtatgatt
JMSF002L19+ TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
JMSF002I19+ TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
rJMSF002L19- TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
____________________________________________________________
consensus TTTCATCATCAATCTCAACAGTTGTCACAATTTCTTCAACATCACCAAGAATCATATTAA
. : . : . : . : . : . :
JMFN028D16+ GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
JMFN012A02+ GATGATGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
JMFF019B21+ GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
rJMFF019B21- GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
JMFF040B23+ GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
rJMFF040B23- GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
JMFS056F05+ GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
rJMSF002I19- GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
rJMCP016C08+ GATGTTcATCATAAGCtacAAGTTTTCCGCGGAcaagtgGGagccAACGGAGgaacACGa
JMSF002L19+ GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
JMSF002I19+ GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
rJMSF002L19- GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
____________________________________________________________
consensus GATGTTGATCATAAGCATGAAGTTTTCCGCGGAGTTCACGGTCGGAACGGAGCTTGACGT
. : . : . : . : . : . :
JMFN028D16+ AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
JMFN012A02+ AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
JMFF019B21+ AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
rJMFF019B21- AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
JMFF040B23+ AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
rJMFF040B23- AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
JMFS056F05+ AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
rJMSF002I19- AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
rJMCP016C08+ tAATTCTCTCcagGAGcgactcgCacAattGATCCAGCccgaggTagtgacacCTCTCTT
JMSF002L19+ AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
JMSF002I19+ AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
rJMSF002L19- AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
____________________________________________________________
consensus AAATTCTCTCGTCGAGGCTGAGCCTGATAAGATCCAGCGGCTCCTTCACTGTGCTCTCTT
. : . : . : . : . : . :
JMFN028D16+ CTTCACTCCCCATTCTGTCTCTC
JMFN012A02+ CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCG
JMFF019B21+ CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCGATCCTTCAC
rJMFF019B21- CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCGATCCTTCAC
JMFF040B23+ CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCGATCCTTCAC
rJMFF040B23- CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCGATCCTTCAC
JMFS056F05+ CTTCACTCCCCATTC
rJMSF002I19- CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCGATCCTTC
rJMCP016C08+ CTTgtgTCCCCATTCTG
JMSF002L19+ CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCGATCCTTCACACTTCCAG
JMSF002I19+ CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCGATCCTTC
rJMSF002L19- CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCGATCCTTCACACTTCCAG
____________________________________________________________
consensus CTTCACTCCCCATTCTGTCTCTCTCGGACTGCGCGCCTTTTCGATCCTTCACACTTCCAG