| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN016K17 | Sequence | 506 | 002750 (3) | ref|XP_002533251.1| | 2e-51 | chlorophyll A/B binding protein, putative [Ricinus communis] gb|EEF29136.1| chlo | |||||
| JMSF002H06 | Sequence | 376 | 012423 (27) | ref|XP_002275552.1| | 1e-08 | PREDICTED: chlorophyll a-b binding protein 6, chloroplastic [Vitis vinifera] em | 754 | 002750 (3) | ref|XP_008453995.1| | 6e-78 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform X1 [Cucumi |
| JMSF025L22 | Sequence | 690 | 010726 (2) | ref|XP_009103940.1| | 4e-15 | PREDICTED: chlorophyll a-b binding protein 6, chloroplastic isoform X2 [Brassic | 757 | 002750 (3) | ref|XP_008453995.1| | 1e-82 | PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic isoform X1 [Cucumi |
This contig is upended
. : . : . : . : . : . :
rJMSF025L22+ ACTGCAGATGGGCTATGCNT
____________________________________________________________
consensus ACTGCAGATGGGCTATGCNT
. : . : . : . : . : . :
rJMSF025L22+ GCTGTGGTAATATTCTTTATTTCAATATTTCTATACTTATTGGATCTGTATCTCGTGAAA
____________________________________________________________
consensus GCTGTGGTAATATTCTTTATTTCAATATTTCTATACTTATTGGATCTGTATCTCGTGAAA
. : . : . : . : . : . :
rJMSF025L22+ TGAGACTAATTTAGTGTGTGTACGTTGCAGCCTGGGATCATAATACCAGAGGCATTGGGT
rJMSF002H06+ GCCTGGGATCATAATACCAGAGGCATTGGG-
____________________________________________________________
consensus TGAGACTAATTTAGTGTGTGTACGTTGCAGCCTGGGATCATAATACCAGAGGCATTGGGT
. : . : . : . : . : . :
rJMSF025L22+ TTGGGGAACTGGGTAAAGGCACAAGAATGGGCAGCGATTCCAGGAGGACAGGCGACGTAC
rJMSF002H06+ TTGGGGAACTGGGTAAAGGCACAAGAATGGGCAGCGATTCCAGGAGGACAGGCGACGTAC
____________________________________________________________
consensus TTGGGGAACTGGGTAAAGGCACAAGAATGGGCAGCGATTCCAGGAGGACAGGCGACGTAC
. : . : . : . : . : . :
rJMSF025L22+ CTGGGACAGCCGGTGCCATGGGGCACACTTCCTACCATTTTGGCCATCGAATTCCTGGCC
JMFN016K17+ TTTTGGCCATCGAATTCCTGGCC
rJMSF002H06+ CTGGGACAGCCGGTGCCATGGGGCACACTTCCTACCATTTTGGCCATCGAATTCCTGGCC
____________________________________________________________
consensus CTGGGACAGCCGGTGCCATGGGGCACACTTCCTACCATTTTGGCCATCGAATTCCTGGCC
. : . : . : . : . : . :
rJMSF025L22+ ATTGCATTCGTGGAGCACCAAAGAAGTATGGAGAAAGACACTGAGAAAAAGAAGTACCCC
JMFN016K17+ ATTGCATTCGTGGAGCACCAAAGAAGTATGGAGAAAGACACTGAGAAAAAGAAGTACCCC
rJMSF002H06+ ATTGCATTCGTGGAGCACCAAAGAAGTATGGAGAAAGACACTGAGAAAAAGAAGTACCCC
____________________________________________________________
consensus ATTGCATTCGTGGAGCACCAAAGAAGTATGGAGAAAGACACTGAGAAAAAGAAGTACCCC
. : . : . : . : . : . :
rJMSF025L22+ GGTGGCGCCTTCGACCCCTTGGGCTACTCCAAGCAGGACCCTGCTAAACTCCACGAGCTC
JMFN016K17+ GGTGGCGCCTTCGACCCCTTGGGCTACTCCAAGCAGGACCCTGCTAAACTCCACGAGCTC
rJMSF002H06+ GGTGGCGCCTTCGACCCCTTGGGCTACTCCAAGCAGGACCCTGCTAAACTCCACGAGCTC
____________________________________________________________
consensus GGTGGCGCCTTCGACCCCTTGGGCTACTCCAAGCAGGACCCTGCTAAACTCCACGAGCTC
. : . : . : . : . : . :
rJMSF025L22+ AAAGTCAAGGAGATCAAGAACGGTGAGAACATATCCTTCAATTTAGTATCAGAGTACATA
JMFN016K17+ AAAGTCAAGGAGATCAAGAACGGTGAGAACATATCCTTCAATTTAGTATCAGAGTACATA
rJMSF002H06+ AAAGTCAAGGAGATCAAGAACGGTGAGAACATATCCTTCAATTTAGTATCAGAGTACATA
____________________________________________________________
consensus AAAGTCAAGGAGATCAAGAACGGTGAGAACATATCCTTCAATTTAGTATCAGAGTACATA
. : . : . : . : . : . :
rJMSF025L22+ TATTCTTCAATTTAGTATCAGAGTGACGTAATATTCCTGGTGGAATATTCTGATGTTATG
JMFN016K17+ TATTCTTCAATTTAGTATCAGAGTGACGTAATATTCCTGGTGGAATATTCTGATGTTATG
rJMSF002H06+ TATTCTTCAATTTAGTATCAGAGTGACGTAATATTCCTGGTGGAATATTCTGATGTTATG
____________________________________________________________
consensus TATTCTTCAATTTAGTATCAGAGTGACGTAATATTCCTGGTGGAATATTCTGATGTTATG
. : . : . : . : . : . :
rJMSF025L22+ TTTTGTTGGTGTAATGAACGTACAGGTCGCCTTGCGTTGTTGGCATTCGTGGGAATCTGC
JMFN016K17+ TTTTGTTGGTGTAATGAACGTACAGGTCGCCTTGCGTTGTTGGCATTCGTGGGAATCTGC
rJMSF002H06+ TTTTGTTGGTGTAATGAACGTACAGGTCGCCTTGCGTTGTTGGCATTCGTGGGAATCTGC
____________________________________________________________
consensus TTTTGTTGGTGTAATGAACGTACAGGTCGCCTTGCGTTGTTGGCATTCGTGGGAATCTGC
. : . : . : . : . : . :
rJMSF025L22+ GTTCAGCAGTCGGCGTACCCAGGAACAGGACCGCTGGAGAACTTGGCGAGCCACTTGGCG
JMFN016K17+ GTTCAGCAGTCGGCGTACCCAGGAACAGGACCGCTGGAGAACTTGGCGAGCCACTTGGCG
rJMSF002H06+ GTTCAGCAGTCGGCGTACCCAGGAACAGGACCGCTGGAGAACTTGGCGAGCCACTTGGCG
____________________________________________________________
consensus GTTCAGCAGTCGGCGTACCCAGGAACAGGACCGCTGGAGAACTTGGCGAGCCACTTGGCG
. : . : . : . : . : . :
rJMSF025L22+ GATCCATGGCACAACAACATCGGAGACATTCTTACCCCTAGAACTATTTCGCCCTGAAAA
JMFN016K17+ GATCCATGGCACAACAACATCGGAGACATTTTTATCCCTAGAACTATTTCGCCCTGAAAA
rJMSF002H06+ GATCCATGGCACAACAACATCGGAGACATTCTTATCCCTAGAACTATTTCGCCCTGAAAA
____________________________________________________________
consensus GATCCATGGCACAACAACATCGGAGACATTCTTATCCCTAGAACTATTTCGCCCTGAAAA
. : . : . : . : . : . :
rJMSF025L22+ TTATATTAATGTAAAACTCCGATCCGATGAACACAAATTTGTAATCCACTGAACTTCATT
JMFN016K17+ TTATATTAATGTAAAACTCCGATCCGATGAACACAAATTTGTAATCCACTGAACTTCATT
rJMSF002H06+ TTATATTAATGTAAAACTCCGATCCGATGAACACAAATTTGTAATCCACTGAACTTCATT
____________________________________________________________
consensus TTATATTAATGTAAAACTCCGATCCGATGAACACAAATTTGTAATCCACTGAACTTCATT
. : . : . : . : . : . :
rJMSF025L22+ GTGAATCTTTGGGTCTG
JMFN016K17+ GTG
rJMSF002H06+ GTGAATCTTTGGGTCTGTATAAGTACATACCAATTTTATATGTGAGCTCCATGTTACTAC
____________________________________________________________
consensus GTGAATCTTTGGGTCTGTATAAGTACATACCAATTTTATATGTGAGCTCCATGTTACTAC
. : . : . : . : . : . :
rJMSF002H06+ TAGAGAAAAAGGTAACTTGCTAGGTACCCGTGTTTTGTGTTTGATAAAGTTTTACTCTTT
____________________________________________________________
consensus TAGAGAAAAAGGTAACTTGCTAGGTACCCGTGTTTTGTGTTTGATAAAGTTTTACTCTTT