Contig 002744:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P19Sequence251002744 (4)694002744 (4)ref|XP_011000584.1|6e-81PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Populus euphratica]
JMSF033O22Sequence680002744 (4)ref|XP_011000584.1|1e-41PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Populus euphratica]680002744 (4)ref|XP_011000584.1|5e-81PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF001P19- GATC
                      ____________________________________________________________
consensus GATC
 
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JMSF001P19- TTTTATCCAGGATATTTCATCCTCAGCCACTGTCGCCGGCCGCTTCTTTACGAACTATAG
JMSF033O22- ACGAACTATAG
                      ____________________________________________________________
consensus TTTTATCCAGGATATTTCATCCTCAGCCACTGTCGCCGGCCGCTTCTTTACGAACTATAG
 
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JMSF001P19- TCACTCTCATTCCCTCACCCTCTAGCCCTGGCCACTGTCGCCGTCCTCCACTCCCCCACT
JMSF033O22- TCACTCTCATTCCCTCACCCTCTAGCCCTGGCCACTGTCGCCGTCCTCCACTCCCCCACT
                      ____________________________________________________________
consensus TCACTCTCATTCCCTCACCCTCTAGCCCTGGCCACTGTCGCCGTCCTCCACTCCCCCACT
 
. : . : . : . : . : . :
JMSF001P19- AGCTCTCGCCCTAGGTCAGCACCCGCCTGAAGCATCATCGTGTGAGTTTCAGCCAAGCTT
JMSF033O22- AGCTCTCGCCCTAGGTCAGCACCCGCCTGAAGCATCATCGTGTGAGTTTCAGCCAAGCTT
                      ____________________________________________________________
consensus AGCTCTCGCCCTAGGTCAGCACCCGCCTGAAGCATCATCGTGTGAGTTTCAGCCAAGCTT
 
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JMSF001P19- TCACCGCTCTATCGCTCTATCTGTCGCGAANCACTGCTCTGTCCTCTGCGCCTCTGCCTC
JMSF033O22- TCACCGCTCTATCGCTCTATCTGTCGCGAACCACTGCTCTGTCCTCTGCGCCTCTGCCTC
                      ____________________________________________________________
consensus TCACCGCTCTATCGCTCTATCTGTCGCGAACCACTGCTCTGTCCTCTGCGCCTCTGCCTC
 
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JMSF001P19- TGCCTCG
JMSF033O22- TGCCTCGCCGGTTTCCCGGCTTCGTCTTCAACCGTCATCTGTCGTCGGCTCCGTCTTCAC
rJMSF033O22+ TTCAACCGTCATCTGTCGTCGGCTCCGTCTTCAC
rJMSF001P19+ TTCAACCGTCATCTGTCGTCGGCTCCGTCTTCAC
                      ____________________________________________________________
consensus TGCCTCGCCGGTTTCCCGGCTTCGTCTTCAACCGTCATCTGTCGTCGGCTCCGTCTTCAC
 
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JMSF033O22- CCTCAGCCCTCAGTTAGTTGCTAAGGAAGCTTGAAAAGAATGCTGCAGTTAGCCGCCGCT
rJMSF033O22+ CCTCAGCCCTCAGTTAGTTGCTAAGGAAGCTTGAAAAGAATGCTGCAGTTAGCCGCCGCT
rJMSF001P19+ CCTCAGCCCTCAGTTAGTTGCTAAGGAAGCTTGAAAAGAATGCTGCAGTTAGCCGCCGCT
                      ____________________________________________________________
consensus CCTCAGCCCTCAGTTAGTTGCTAAGGAAGCTTGAAAAGAATGCTGCAGTTAGCCGCCGCT
 
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JMSF033O22- GGCTGTCTCTCAGTTCGGTCTGCAGCACCACTGGTTGCGTCTCCCCAATTGCAGTTTTGT
rJMSF033O22+ GGCTGTCTCTCAGTTCGGTCTGCAGCACCACTGGTTGCGTCTCCCCAATTGCAGTTTTGT
rJMSF001P19+ GGCTGTCTCTCAGTTCGGTCTGCAGCACCACTGGTTGCGTCTCCCCAATTGCAGTTTTGT
                      ____________________________________________________________
consensus GGCTGTCTCTCAGTTCGGTCTGCAGCACCACTGGTTGCGTCTCCCCAATTGCAGTTTTGT
 
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JMSF033O22- TCAAAACCCAAAAATTGTCTCTTGTCGAGAACCCCTGGTTGGAATTCTTGGAGTCCTGCC
rJMSF033O22+ TCAAAACCCAAAAATTGTCTCTTGTCGAGAACCCCTGGTTGGAATTCTTGGAGTCCTGCC
rJMSF001P19+ TCAAAACCCAAAAATTGTCTCTTGTCGAGAACCCCTGGTTGGAATTCTTGGAGTCCTGCC
                      ____________________________________________________________
consensus TCAAAACCCAAAAATTGTCTCTTGTCGAGAACCCCTGGTTGGAATTCTTGGAGTCCTGCC
 
. : . : . : . : . : . :
JMSF033O22- ATTAGATCCTCTCCACTATTATCAACCTCAAGAAAGTCCATTTGCAGACCGCCCTTGGGG
rJMSF033O22+ ATTAGATCCTCTCCACTATTATCAACCTCAAGAAAGTCCATTTGCAGACCGCCCTTGGGG
rJMSF001P19+ ATTAGATCCTCTCCACTATTATCAACCTCAAGAAAGTCCATTTGCAGACCGCCCTTGGGG
                      ____________________________________________________________
consensus ATTAGATCCTCTCCACTATTATCAACCTCAAGAAAGTCCATTTGCAGACCGCCCTTGGGG
 
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JMSF033O22- AAATATGTCAGAGAGGATTACCTTGTGAAGAAGCTCTCTGCCAAAGAGATCCAAGAGCTG
rJMSF033O22+ AAATATGTCAGAGAGGATTACCTTGTGAAGAAGCTCTCTGCCAAAGAGATCCAAGAGCTG
rJMSF001P19+ AAATATGTCAGAGAGGATTACCTTGTGAAGAAGCTCTCTGCCAAAGAGATCCAAGAGCTG
                      ____________________________________________________________
consensus AAATATGTCAGAGAGGATTACCTTGTGAAGAAGCTCTCTGCCAAAGAGATCCAAGAGCTG
 
. : . : . : . : . : . :
JMSF033O22- ATAAAGGGAGAAAGGAGTGTGCCAGTGATTATTGATTTCTATGCAACGTGGTGTGGTCCT
rJMSF033O22+ ATAAAGGGAGAAAGGAGTGTGCCAGTGATTATTGATTTCTATGCAACGTGGTGTGGTCCT
rJMSF001P19+ ATAAAGGGAGAAAGGAGTGTGCCAGTGATTATTGATTTCTATGCAACGTGGTGTGGTCCT
                      ____________________________________________________________
consensus ATAAAGGGAGAAAGGAGTGTGCCAGTGATTATTGATTTCTATGCAACGTGGTGTGGTCCT
 
. : . : . : . : . : . :
JMSF033O22- TGTATACTGATGGCTCAAGAACTTGAAATGCTTGCTGTAGAGTATGAAAGCAATGCAGTT
rJMSF033O22+ TGTATACTGATGGCTCAAGAACTTGAAATGCTTGCTGTAGAGTATGAAAGCAATGCAGTT
rJMSF001P19+ TGTATACTGATGGCTCAAGAACTTGAAATGCTTGCTGTAGAGTATGAAAGCAATGCAGTT
                      ____________________________________________________________
consensus TGTATACTGATGGCTCAAGAACTTGAAATGCTTGCTGTAGAGTATGAAAGCAATGCAGTT
 
. : . : . : . : . : . :
JMSF033O22- ATTGTGAA
rJMSF033O22+ ATTGTGAAGGTTGACACAGATGATGAATATGAATTTGCACGTGAAATGCAGGTTCGAGGA
rJMSF001P19+ ATTGTGAAGGTTGACACAGATGATGAATATGAATTTGCACGTGAAATGCAGGTTCGAGGA
                      ____________________________________________________________
consensus ATTGTGAAGGTTGACACAGATGATGAATATGAATTTGCACGTGAAATGCAGGTTCGAGGA
 
. : . : . : . : . : . :
rJMSF033O22+ TTACCTACATTGTATTTCATCAGTCCAGATTCAAACAAAGATGCAATCAGAACTGAAGGT
rJMSF001P19+ TTACCTACATTGTATTTCATCAGTCCAGATTCAAACAAAGATGCAATCAGAACTGAAGGT
                      ____________________________________________________________
consensus TTACCTACATTGTATTTCATCAGTCCAGATTCAAACAAAGATGCAATCAGAACTGAAGGT
 
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rJMSF033O22+ CTCATCCCAATACAGATGATGAGGGATATCATTGATAATGAAATGTAATCGATTGTAGCA
rJMSF001P19+ CTCATCCCAATACAGATGATGAGGGATATCATTGATAATGAAATGTAATCGATTGTAGCA
                      ____________________________________________________________
consensus CTCATCCCAATACAGATGATGAGGGATATCATTGATAATGAAATGTAATCGATTGTAGCA
 
. : . : . : . : . : . :
rJMSF033O22+ CCCATTACTCATGAGGCCTCTATTTCTAATTGTAACAAAATTC
rJMSF001P19+ CCCATTACTCATGAGGCCTCTATTTCTAATTGTAACAAAATTCAATTTCATGTACTCGCT
                      ____________________________________________________________
consensus CCCATTACTCATGAGGCCTCTATTTCTAATTGTAACAAAATTCAATTTCATGTACTCGCT