Contig 002744:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF001P19-                                                                   GATC
                      ____________________________________________________________
consensus                                                                     GATC
 
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JMSF001P19-           TTTTATCCAGGATATTTCATCCTCAGCCACTGTCGCCGGCCGCTTCTTTACGAACTATAG
JMSF033O22-                                                            ACGAACTATAG
                      ____________________________________________________________
consensus             TTTTATCCAGGATATTTCATCCTCAGCCACTGTCGCCGGCCGCTTCTTTACGAACTATAG
 
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JMSF001P19-           TCACTCTCATTCCCTCACCCTCTAGCCCTGGCCACTGTCGCCGTCCTCCACTCCCCCACT
JMSF033O22-           TCACTCTCATTCCCTCACCCTCTAGCCCTGGCCACTGTCGCCGTCCTCCACTCCCCCACT
                      ____________________________________________________________
consensus             TCACTCTCATTCCCTCACCCTCTAGCCCTGGCCACTGTCGCCGTCCTCCACTCCCCCACT
 
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JMSF001P19-           AGCTCTCGCCCTAGGTCAGCACCCGCCTGAAGCATCATCGTGTGAGTTTCAGCCAAGCTT
JMSF033O22-           AGCTCTCGCCCTAGGTCAGCACCCGCCTGAAGCATCATCGTGTGAGTTTCAGCCAAGCTT
                      ____________________________________________________________
consensus             AGCTCTCGCCCTAGGTCAGCACCCGCCTGAAGCATCATCGTGTGAGTTTCAGCCAAGCTT
 
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JMSF001P19-           TCACCGCTCTATCGCTCTATCTGTCGCGAANCACTGCTCTGTCCTCTGCGCCTCTGCCTC
JMSF033O22-           TCACCGCTCTATCGCTCTATCTGTCGCGAACCACTGCTCTGTCCTCTGCGCCTCTGCCTC
                      ____________________________________________________________
consensus             TCACCGCTCTATCGCTCTATCTGTCGCGAACCACTGCTCTGTCCTCTGCGCCTCTGCCTC
 
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JMSF001P19-           TGCCTCG                                                     
JMSF033O22-           TGCCTCGCCGGTTTCCCGGCTTCGTCTTCAACCGTCATCTGTCGTCGGCTCCGTCTTCAC
rJMSF033O22+                                    TTCAACCGTCATCTGTCGTCGGCTCCGTCTTCAC
rJMSF001P19+                                    TTCAACCGTCATCTGTCGTCGGCTCCGTCTTCAC
                      ____________________________________________________________
consensus             TGCCTCGCCGGTTTCCCGGCTTCGTCTTCAACCGTCATCTGTCGTCGGCTCCGTCTTCAC
 
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JMSF033O22-           CCTCAGCCCTCAGTTAGTTGCTAAGGAAGCTTGAAAAGAATGCTGCAGTTAGCCGCCGCT
rJMSF033O22+          CCTCAGCCCTCAGTTAGTTGCTAAGGAAGCTTGAAAAGAATGCTGCAGTTAGCCGCCGCT
rJMSF001P19+          CCTCAGCCCTCAGTTAGTTGCTAAGGAAGCTTGAAAAGAATGCTGCAGTTAGCCGCCGCT
                      ____________________________________________________________
consensus             CCTCAGCCCTCAGTTAGTTGCTAAGGAAGCTTGAAAAGAATGCTGCAGTTAGCCGCCGCT
 
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JMSF033O22-           GGCTGTCTCTCAGTTCGGTCTGCAGCACCACTGGTTGCGTCTCCCCAATTGCAGTTTTGT
rJMSF033O22+          GGCTGTCTCTCAGTTCGGTCTGCAGCACCACTGGTTGCGTCTCCCCAATTGCAGTTTTGT
rJMSF001P19+          GGCTGTCTCTCAGTTCGGTCTGCAGCACCACTGGTTGCGTCTCCCCAATTGCAGTTTTGT
                      ____________________________________________________________
consensus             GGCTGTCTCTCAGTTCGGTCTGCAGCACCACTGGTTGCGTCTCCCCAATTGCAGTTTTGT
 
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JMSF033O22-           TCAAAACCCAAAAATTGTCTCTTGTCGAGAACCCCTGGTTGGAATTCTTGGAGTCCTGCC
rJMSF033O22+          TCAAAACCCAAAAATTGTCTCTTGTCGAGAACCCCTGGTTGGAATTCTTGGAGTCCTGCC
rJMSF001P19+          TCAAAACCCAAAAATTGTCTCTTGTCGAGAACCCCTGGTTGGAATTCTTGGAGTCCTGCC
                      ____________________________________________________________
consensus             TCAAAACCCAAAAATTGTCTCTTGTCGAGAACCCCTGGTTGGAATTCTTGGAGTCCTGCC
 
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JMSF033O22-           ATTAGATCCTCTCCACTATTATCAACCTCAAGAAAGTCCATTTGCAGACCGCCCTTGGGG
rJMSF033O22+          ATTAGATCCTCTCCACTATTATCAACCTCAAGAAAGTCCATTTGCAGACCGCCCTTGGGG
rJMSF001P19+          ATTAGATCCTCTCCACTATTATCAACCTCAAGAAAGTCCATTTGCAGACCGCCCTTGGGG
                      ____________________________________________________________
consensus             ATTAGATCCTCTCCACTATTATCAACCTCAAGAAAGTCCATTTGCAGACCGCCCTTGGGG
 
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JMSF033O22-           AAATATGTCAGAGAGGATTACCTTGTGAAGAAGCTCTCTGCCAAAGAGATCCAAGAGCTG
rJMSF033O22+          AAATATGTCAGAGAGGATTACCTTGTGAAGAAGCTCTCTGCCAAAGAGATCCAAGAGCTG
rJMSF001P19+          AAATATGTCAGAGAGGATTACCTTGTGAAGAAGCTCTCTGCCAAAGAGATCCAAGAGCTG
                      ____________________________________________________________
consensus             AAATATGTCAGAGAGGATTACCTTGTGAAGAAGCTCTCTGCCAAAGAGATCCAAGAGCTG
 
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JMSF033O22-           ATAAAGGGAGAAAGGAGTGTGCCAGTGATTATTGATTTCTATGCAACGTGGTGTGGTCCT
rJMSF033O22+          ATAAAGGGAGAAAGGAGTGTGCCAGTGATTATTGATTTCTATGCAACGTGGTGTGGTCCT
rJMSF001P19+          ATAAAGGGAGAAAGGAGTGTGCCAGTGATTATTGATTTCTATGCAACGTGGTGTGGTCCT
                      ____________________________________________________________
consensus             ATAAAGGGAGAAAGGAGTGTGCCAGTGATTATTGATTTCTATGCAACGTGGTGTGGTCCT
 
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JMSF033O22-           TGTATACTGATGGCTCAAGAACTTGAAATGCTTGCTGTAGAGTATGAAAGCAATGCAGTT
rJMSF033O22+          TGTATACTGATGGCTCAAGAACTTGAAATGCTTGCTGTAGAGTATGAAAGCAATGCAGTT
rJMSF001P19+          TGTATACTGATGGCTCAAGAACTTGAAATGCTTGCTGTAGAGTATGAAAGCAATGCAGTT
                      ____________________________________________________________
consensus             TGTATACTGATGGCTCAAGAACTTGAAATGCTTGCTGTAGAGTATGAAAGCAATGCAGTT
 
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JMSF033O22-           ATTGTGAA                                                    
rJMSF033O22+          ATTGTGAAGGTTGACACAGATGATGAATATGAATTTGCACGTGAAATGCAGGTTCGAGGA
rJMSF001P19+          ATTGTGAAGGTTGACACAGATGATGAATATGAATTTGCACGTGAAATGCAGGTTCGAGGA
                      ____________________________________________________________
consensus             ATTGTGAAGGTTGACACAGATGATGAATATGAATTTGCACGTGAAATGCAGGTTCGAGGA
 
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rJMSF033O22+          TTACCTACATTGTATTTCATCAGTCCAGATTCAAACAAAGATGCAATCAGAACTGAAGGT
rJMSF001P19+          TTACCTACATTGTATTTCATCAGTCCAGATTCAAACAAAGATGCAATCAGAACTGAAGGT
                      ____________________________________________________________
consensus             TTACCTACATTGTATTTCATCAGTCCAGATTCAAACAAAGATGCAATCAGAACTGAAGGT
 
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rJMSF033O22+          CTCATCCCAATACAGATGATGAGGGATATCATTGATAATGAAATGTAATCGATTGTAGCA
rJMSF001P19+          CTCATCCCAATACAGATGATGAGGGATATCATTGATAATGAAATGTAATCGATTGTAGCA
                      ____________________________________________________________
consensus             CTCATCCCAATACAGATGATGAGGGATATCATTGATAATGAAATGTAATCGATTGTAGCA
 
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rJMSF033O22+          CCCATTACTCATGAGGCCTCTATTTCTAATTGTAACAAAATTC                 
rJMSF001P19+          CCCATTACTCATGAGGCCTCTATTTCTAATTGTAACAAAATTCAATTTCATGTACTCGCT
                      ____________________________________________________________
consensus             CCCATTACTCATGAGGCCTCTATTTCTAATTGTAACAAAATTCAATTTCATGTACTCGCT