Contig 002730:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021H19Sequence528002730 (18)ref|XP_009771097.1|2e-61PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nicotiana sy683002730 (18)ref|XP_011078736.1|2e-100PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Sesamum indi
JMFF046N21Sequence538002730 (18)ref|XP_009771097.1|4e-56PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nicotiana sy239002730 (18)
JMFF049P08Sequence640002730 (18)ref|XP_009771097.1|6e-79PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nicotiana sy442002730 (18)ref|XP_009417101.1|2e-21PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Musa acumina
JMSF001O23Sequence184002730 (18)393002730 (18)ref|XP_010256162.1|4e-45PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nelumbo nuci
JMSF016L19Sequence433002730 (18)ref|XP_010256162.1|8e-29PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nelumbo nuci750002730 (18)ref|XP_009610024.1|2e-113PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nicotiana to
JMSF037A04Sequence606002730 (18)ref|XP_009771097.1|5e-72PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nicotiana sy688002730 (18)ref|XP_011078736.1|1e-109PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Sesamum indi
JMSF040I13Sequence634002730 (18)ref|XP_009771097.1|6e-75PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nicotiana sy350002730 (18)ref|XP_010256162.1|4e-11PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nelumbo nuci
JMSF042M14Sequence697002730 (18)ref|XP_009771097.1|1e-97PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nicotiana sy722002730 (18)ref|XP_011078736.1|2e-109PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Sesamum indi
JMSF052O16Sequence695002730 (18)ref|XP_009771097.1|7e-96PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nicotiana sy834002730 (18)ref|XP_009771097.1|4e-140PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Nicotiana sy

Alignment

This contig is upended


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JMSF037A04-                                                                     AT
JMSF016L19-                                                         AGATCGAATCCTAT
JMSF040I13-                                                        CAGATCGAATCCTAT
JMSF052O16-                                                                     AT
                      ____________________________________________________________
consensus                                                          CAGATCGAATCCTAT
 
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JMSF037A04-           AGTAGAGGAGTGGAGACTCCAGTCCACTCTCACCTCTCATCTCCGCCATAGCCATGGCCA
JMFF046N21-           AGTAGAGGAGTGGAGACTCCAGTCCACTCTCACCTCTCATCTCCGCCATAGCCATGGCCA
JMFF021H19-                                          ACCTCTCATCTCCGCCATAGCCATGGCCA
JMSF016L19-           AGTAGAGGAGTGGAGACTCCAGTCCACTCTCACCTCTCATCTCCGCCATAGCCATGGCCA
JMSF001O23-                        AGACTCCAGTCCACTCTCACCTCTCATCTCCGCCATAGCCATGGCCA
JMSF040I13-           AGTAGAGGAGTGGAGACTCCAGTCCACTCTCACCTCTCATCTCCGCCATAGCCATGGCCA
JMFF049P08-           AGTAGAGGAGTGGAGACTCCAGTCCACTCTCACCTCTCATCTCCGCCATAGCCATGGCCA
JMSF052O16-           AGTAGAGGAGTGGAGACTCCAGTCCACTCTCACCTCTCATCTCCGCCATAGCCATGGCCA
JMSF042M14-              AGAGGAGTGGAGACTCCAGTCCACTCTCACCTCTCATCTCCGCCATAGCCATGGCCA
                      ____________________________________________________________
consensus             AGTAGAGGAGTGGAGACTCCAGTCCACTCTCACCTCTCATCTCCGCCATAGCCATGGCCA
 
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JMSF037A04-           CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
JMFF046N21-           CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
JMFF021H19-           CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
JMSF016L19-           CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
JMSF001O23-           CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
JMSF040I13-           CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
JMFF049P08-           CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
JMSF052O16-           CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
JMSF042M14-           CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
                      ____________________________________________________________
consensus             CCTTATCCTTCATCTCTTCCTCCTCTCTCCTCCATGGCAATGCCTCCTCCGCCGCCGGAA
 
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JMSF037A04-           CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
JMFF046N21-           CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
JMFF021H19-           CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
JMSF016L19-           CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
JMSF001O23-           CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
JMSF040I13-           CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
JMFF049P08-           CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
JMSF052O16-           CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
JMSF042M14-           CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
                      ____________________________________________________________
consensus             CCACCCTACGCACACCTTCCCTTATGCCGCCGCGCCAGCGCAGCAACCCCTCCTCTCTCA
 
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JMSF037A04-           GCGTGCGGCGCACCCCCACTTTCAGAGCCTTCTCCGCCCCCTCCCCTCCCCCTGCCTTAA
JMFF046N21-           GCGTGCGGCGCACCCCCACTTTCAGAGCCTTCTCCGCCCCCTCCCCTCCCCCTGCCTTAA
JMFF021H19-           GCGTGCGGCGCACCCCCACTTTCAGAGCCTTCTCCGCCCCCTCCCCTCCCCCTGCCTTAA
JMSF016L19-           GCGTGCGGCGCACCCCCACTTTCAGAGCCTTCTCCGCCCCCTCCCCTCCCCCTGCCTTAA
JMSF001O23-           GCGTGCGGCGCA                                                
JMSF040I13-           GCGTGCGGCGCACCCCCACTTTCAGAGCCTTCTCCGCCCCCTCCCCTCCCCCTGCCTTAA
JMFF049P08-           GCGTGCGGCGCACCCCCACTTTCAGAGCCTTCTCCGCCCCCTCCCCTCCCCCTGCCTTAA
JMSF052O16-           GCGTGCGGCGCACCCCCACTTTCAGAGCCTTCTCCGCCCCCTCCCCTCCCCCTGCCTTAA
JMSF042M14-           GCGTGCGGCGCACCCCCACTTTCAGAGCCTTCTCCGCCCCCTCCCCTCCCCCTGCCTTAA
rJMSF052O16+                                                                   TAA
                      ____________________________________________________________
consensus             GCGTGCGGCGCACCCCCACTTTCAGAGCCTTCTCCGCCCCCTCCCCTCCCCCTGCCTTAA
 
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JMSF037A04-           CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
JMFF046N21-           CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
JMFF021H19-           CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
JMSF016L19-           CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
JMSF040I13-           CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
JMFF049P08-           CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
JMSF052O16-           CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
JMSF042M14-           CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
rJMSF052O16+          CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
                      ____________________________________________________________
consensus             CGCAGGACGACCTCAAGAAGCTCGCTGCCGACAAGGCGGTGGACTATGTGAAGAGCGGGA
 
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JMSF037A04-           TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
JMFF046N21-           TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
JMFF021H19-           TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
JMSF016L19-           TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
JMSF040I13-           TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
JMFF049P08-           TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
JMSF052O16-           TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
JMSF042M14-           TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
rJMSF052O16+          TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
rJMSF016L19+                                                             TCGGCGAGC
                      ____________________________________________________________
consensus             TGGTCCTCGGCCTCGGGACTGGCTCCACCGCCGCCTTCGTGGTGGCCAAGCTCGGCGAGC
 
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JMSF037A04-           TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
JMFF046N21-           TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
JMFF021H19-           TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
JMSF016L19-           TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCA  
JMSF040I13-           TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
JMFF049P08-           TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
JMSF052O16-           TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
JMSF042M14-           TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
rJMSF052O16+          TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
rJMSF042M14+                           CTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
rJMSF037A04+                           CTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
rJMFF021H19+                                                               ACTCAGG
rJMSF016L19+          TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
                      ____________________________________________________________
consensus             TCATTTCCTCCGGCCAACTCACGGACATCGTCGGCGTGCCGACCTCCAAGCGCACTCAGG
 
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JMSF037A04-           AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
JMFF046N21-           AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
JMFF021H19-           AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
JMSF040I13-           AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
JMFF049P08-           AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
JMSF052O16-           AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
JMSF042M14-           AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
rJMSF052O16+          AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
rJMSF042M14+          AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
rJMSF037A04+          AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
rJMFF021H19+          AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
rJMSF016L19+          AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
                      ____________________________________________________________
consensus             AGCAGGCCGCCTCCCTCAACATCCCGCTCTCCACGCTCGATGATCACCCGAAGCTTGACC
 
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JMSF037A04-           TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
JMFF046N21-           TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGG  
JMFF021H19-           TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
JMSF040I13-           TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
JMFF049P08-           TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
JMSF052O16-           TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
JMSF042M14-           TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
rJMSF052O16+          TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
rJMSF042M14+          TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
rJMSF037A04+          TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
rJMFF021H19+          TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
rJMSF016L19+          TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
                      ____________________________________________________________
consensus             TAGCAATCGACGGCGCCGACGAGGTCGATCCGAATCTGGACCTGGTCAAGGGCCGCGGCG
 
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JMSF037A04-           GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
JMFF021H19-           GCGCTCTCCTCCGCGAGAA                                         
JMSF040I13-           GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
JMFF049P08-           GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
JMSF052O16-           GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
JMSF042M14-           GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
rJMSF052O16+          GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
rJMSF042M14+          GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
rJMSF037A04+          GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
rJMFF021H19+          GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
rJMSF016L19+          GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
                      ____________________________________________________________
consensus             GCGCTCTCCTCCGCGAGAAAATGGTGGAGGCGGCGTCCGACAAGTTCGTGGTGGTCGTCG
 
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JMSF037A04-           ACG                                                         
JMSF040I13-           ACGATACGAAGCTCGTCTC                                         
JMFF049P08-           ACGATACGAAGCTCGTCTCGGNGCTTGGCGGGTCGGGTCT                    
JMSF052O16-           ACGATACGAAGCTCGTCTCGGGGCTTGGCGGGTCGGGTCTCGCAATGCCCGTCGAGGTCG
JMSF042M14-           ACGATACGAAGCTCGTCTCGGGGCTTGGCGGGTCGGGTCTCGCAATGCCCGTCGAGGTCG
rJMSF052O16+          ACGATACGAAGCTCGTCTCGGGGCTTGGCGGGTCGGGTCTCGCAATGCCCGTCGAGGTCG
rJMSF042M14+          ACGATACGAAGCTCGTCTCGGGGCTTGGCGGGTCGGGTCTCGCAATGCCCGTCGAGGTCG
rJMSF001O23+                                                    CAATGCCCGTNGNGGTCG
rJMSF037A04+          ACGATACGAAGCTCGTCTCGGGGCTTGGCGGGTCGGGTCTCGCAATGCCCGTCGAGGTCG
rJMFF021H19+          ACGATACGAAGCTCGTCTCGGGGCTTGGCGGGTCGGGTCTCGCAATGCCCGTCGAGGTCG
rJMSF016L19+          ACGATACGAAGCTCGTCTCGGGGCTTGGCGGGTCGGGTCTCGCAATGCCCGTCGAGGTCG
                      ____________________________________________________________
consensus             ACGATACGAAGCTCGTCTCGGGGCTTGGCGGGTCGGGTCTCGCAATGCCCGTCGAGGTCG
 
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JMSF052O16-           TCCAATTCTGCTGGAAATACAATCTGCTCCGC                            
JMSF042M14-           TCCAATTCTGCTGGAAATACAATCTGCTCCGCCTCCAGG                     
rJMSF052O16+          TCCAATTCTGCTGGAAATACAATCTGCTCCGCCTCCAGGAGATGTTCAGAGAATTGGATT
rJMSF042M14+          TCCAATTCTGCTGGAAATACAATCTGCTCCGCCTCCAGGAGATGTTCAGAGAATTGGATT
rJMSF001O23+          TCCAATTCTGCTGGAAATACAATCTGCTCCGCCTCCAGGAGATGTTCAGAGAATTNNATT
rJMSF040I13+                                           TCCAGGAGATGTTCAGNGAATTGGATT
rJMSF037A04+          TCCAATTCTGCTGGAAATACAATCTGCTCCGCCTCCAGGAGATGTTCAGAGAATTGGATT
rJMFF021H19+          TCCAATTCTGCTGGAAATACAATCTGCTCCGCCTCCAGGAGATGTTCAGAGAATTGGATT
rJMSF016L19+          TCCAATTCTGCTGGAAATACAATCTGCTCCGCCTCCAGGAGATGTTCAGAGAATTGGATT
                      ____________________________________________________________
consensus             TCCAATTCTGCTGGAAATACAATCTGCTCCGCCTCCAGGAGATGTTCAGAGAATTGGATT
 
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rJMSF052O16+          GCGACGCCAAGTTGAGATTGGACGGCGGTAAGCCTTATGTGACGGATAATTCCAATTACA
rJMSF042M14+          GCGACGCCAAGTTGAGATTGGACGGCGGTAAGCCTTATGTGACGGATAATTCCAATTACA
rJMSF001O23+          GCGACGCCAAGGTNAGATTGGACGGCGGTAAGCCTTATGTGACGGATAATTCCAATTACA
rJMSF040I13+          GCGACGCCAAGTTGNGATTGGACGGCGGTAAGCCNTATGNNACGGATAATTCCAATTACA
rJMSF037A04+          GCGACGCCAAGTTGAGATTGGACGGCGGTAAGCCTTATGTGACGGATAATTCCAATTACA
rJMFF021H19+          GCGACGCCAAGTTGAGATTGGACGGCGGTAAGCCTTATGTGACGGATAATTCCAATTACA
rJMSF016L19+          GCGACGCCAAGTTGAGATTGGACGGCGGTAAGCCTTATGTGACGGATAATTCCAATTACA
rJMFF049P08+                                            TTATGTGACGGATAATTCCAATTACA
                      ____________________________________________________________
consensus             GCGACGCCAAGTTGAGATTGGACGGCGGTAAGCCTTATGTGACGGATAATTCCAATTACA
 
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rJMSF052O16+          TTGTGGA-TTTGTACTTTAAGACTCCCATTAAAGATTCCCGCGCCGCCGGGAAGGAGATT
rJMSF042M14+          TTGTGGA-TTTGTACTTTAAGACTCCCATTAAAGATTCCCGCGCCGCCGGGAAGGAGATT
rJMSF001O23+          TTGTGGA-TCTGTACTTTAAGACTCCCATTAAAGATTCCCGCGCCGCCGGNAAGGAGATT
rJMSF040I13+          TTGTGGACTTTNTACTNTAAGACTCCCANNAAAGANTNCCGCGCCNCCGGGAAGGAGATT
rJMSF037A04+          TTGTGGA-TTTGTACTTTAAGACTCCCATTAAAGATTCCCGCGCCGCCGGGAAGGAGATT
rJMFF021H19+          TTGTGGA-TTTGTACTTTAAGACTCCCATTAAAGATTCCCGCGCCGCCGGGAAGGAGATT
rJMSF016L19+          TTGTGGA-TTTGTACTTTAAGACTCCCATTAAAGATTCCCGCGCCGCCGGGAAGGAGATT
rJMFF049P08+          TTGTGGA-TTTGTACTTTAAGACTCCCATTAAAGATTCCCGCGCCCCCGGGAAGGAGATT
                      ____________________________________________________________
consensus             TTGTGGA-TTTGTACTTTAAGACTCCCATTAAAGATTCCCGCGCCGCCGGGAAGGAGATT
 
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rJMSF052O16+          TCGGCG-TTGGAAGGTGTGGTGGAGCATGGATTGTTCTTGGATATGGCCACTGCTGTGAT
rJMSF042M14+          TCGGCG-TTGGAAGGTGTGGTGGAGCATGGATTGTTCTTGGATATGGCCACTGCTGTGAT
rJMSF001O23+          TCGGCG-TTGGAAGGTGTGGTGGAGCATGGATCGTTCTNGGATATGGCCACTGCTNTNAT
rJMSF040I13+          TCGGCGCNTGGAAGGTGTGGTGGAGCATGGATTNNTCTTGGATATGGCCACTGCTNTGAT
rJMSF037A04+          TCGGCG-TTGGAAGGTGTGGTGGAGCATGGATTGTTCTTGGATATGGCCACTGCTGTGAT
rJMFF021H19+          TCGGCG-TTGGAAGGTGTGGTGGAGCATGGATTGTTCTTGGATATGGCCACTGCTGTGAT
rJMSF016L19+          TCGGCG-TTGGAAGGTGTGGTGGAGCATGGATTGTTCTTGGATATGGCCACTGCTGTGAT
rJMFF046N21+                                                                   GAT
rJMFF049P08+          TCGGCG-TTGGAAGGTGTGGTGGAGCATGGATTGTTTTTGGATATGGCCACTGCTGTGAT
                      ____________________________________________________________
consensus             TCGGCG-TTGGAAGGTGTGGTGGAGCATGGATTGTTCTTGGATATGGCCACTGCTGTGAT
 
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rJMSF052O16+          CATTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAA-GTGAAAATGGTGA-GAATCCAAG
rJMSF042M14+          CATTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAA-GTGAAAATGGTGA-GAATCCAAG
rJMSF001O23+          CANTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAA-GTNAAAATNGTGA-GAATCCAAG
rJMSF040I13+          CATTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAACGTGNAAATGGTGACGAATCCAAG
rJMSF037A04+          CATTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAA-GTGAAAATGGTGA-GAATCCAAG
rJMFF021H19+          CATTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAA-GTGAAAATGGTGA-GAATCCAAG
rJMSF016L19+          CATTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAA-GTGAAAATGGTGA-GAATCCAAG
rJMFF046N21+          CATTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAA-GTGAAAATGGTGA-GAATCCAAG
rJMFF049P08+          CATTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAA-GTGAAAATGGTGA-GAATCCAAG
                      ____________________________________________________________
consensus             CATTGCTGGAAAGGAAGGAGTGAGTGTGAAGAGCAA-GTGAAAATGGTGA-GAATCCAAG
 
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rJMSF052O16+          TCATTTTAGCCTTGTTTTATAATTTTTAGTTTTGGAAGTTTATGTTGTAGTATAACTTTT
rJMSF042M14+          TCATTTTAGCCTTGTTTTATAATTTTTAGTTTTGGAAGTTTATGTTGTAGTATAACTTTT
rJMSF001O23+          TCATTTTAGCCTTGTTTTATAATTTTTAGTTTNGGAAGTTTATGTCGTAGTATANCTTTT
rJMSF040I13+          TCATTTTAGCCTTGTNTTATAATTTTTAGTTTTGGAAGTTTA                  
rJMSF037A04+          TCATTTTAGCCTTGTTTTATAATTTTTAGTTTTGGAAGTTTATGTTGTAGTATAACTTTT
rJMFF021H19+          TCATTTTAGCCTTGTTTTATAATTTTCAGTTTTGGAAGTTTATGTTGTAGTATAACTTTT
rJMSF016L19+          TCATTTTAGCCTTGTTTTATAATTTTTAGTTTTGGAAGTTTATGTTGTAGTATAACTTTT
rJMFF046N21+          TCATTTTAGCCTTGTTTTATAATTTTTAGTTTTGGAAGTTTATGTTGTAGTATAACTTTT
rJMFF049P08+          TCATTTTAGCCTTGTTTTATAATTTTTAGTTTTGGAAGTTTATGTTGTAGTATAACTTTT
                      ____________________________________________________________
consensus             TCATTTTAGCCTTGTTTTATAATTTTTAGTTTTGGAAGTTTATGTTGTAGTATAACTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052O16+          GGTACATCATAGTTCAAATGGATTATTGAATTAAATGAGTTCATTACATTCTCTT     
rJMSF042M14+          GGTACATCATAGTTCAAATGGATTATTGAATTAAATGAGTTCATTACATTCTCTTTGTAT
rJMSF001O23+          GGTACATCATAGNTCAAAT                                         
rJMSF037A04+          GGTACATCATAGTTCAAATGGATTATTGAATTAAATGAGTTCATTACAT           
rJMFF021H19+          GGTACATCATAGTTCAAATGGATTATTGAATTAAATGAGTTCATTACATTCTCTTTGTAT
rJMSF016L19+          GGTACATCATAGTTCAAATGGATTATTGAATTAAATGAGTTCATTACATTCTCTTTGTAT
rJMFF046N21+          GGTACATCATAGTTCAAATGGATTATTGAATTAAATGAGTTCATTACATTTTCTTTGTAT
rJMFF049P08+          GGTACATCATAGTTCAAATGGATTATTGAATTAAATGAGTTCATTACATTTTCTTTGTAT
                      ____________________________________________________________
consensus             GGTACATCATAGTTCAAATGGATTATTGAATTAAATGAGTTCATTACATTCTCTTTGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042M14+          GAATAAAAGAAAAACAAAAAATT                                     
rJMFF021H19+          GAATAAAAGAAAAACAAAAA                                        
rJMSF016L19+          GAATAAAAGAAAAACAAAAAATT                                     
rJMFF046N21+          GAATAAAAGAAAAACAAAAAATTTGGTTTATTGTGAATTGAATTATTTATTACCCCTT  
rJMFF049P08+          GAATAAAAGAAAAACAAAAAATTTGGTTTATTGTGAATTGAATTATTTATTACCCCTTXX
                      ____________________________________________________________
consensus             GAATAAAAGAAAAACAAAAAATTTGGTTTATTGTGAATTGAATTATTTATTACCCCTTNN
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF049P08+          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG