| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006F12 | Sequence | 491 | 011618 (8) | dbj|BAO57286.1| | 2e-58 | V-type proton ATPase subunit [Ipomoea nil] | 741 | 002723 (7) | dbj|BAO57286.1| | 7e-94 | V-type proton ATPase subunit [Ipomoea nil] |
| JMFF032N24 | Sequence | 614 | 011618 (8) | dbj|BAO57286.1| | 2e-101 | V-type proton ATPase subunit [Ipomoea nil] | 734 | 002723 (7) | dbj|BAO57286.1| | 3e-93 | V-type proton ATPase subunit [Ipomoea nil] |
| JMFF040J10 | Sequence | 710 | 002723 (7) | dbj|BAO57286.1| | 3e-91 | V-type proton ATPase subunit [Ipomoea nil] | |||||
| JMFF044K06 | Sequence | 630 | 011618 (8) | dbj|BAO57286.1| | 6e-80 | V-type proton ATPase subunit [Ipomoea nil] | 652 | 002723 (7) | dbj|BAO57286.1| | 1e-65 | V-type proton ATPase subunit [Ipomoea nil] |
| JMFF049B24 | Sequence | 627 | 011618 (8) | dbj|BAO57286.1| | 6e-104 | V-type proton ATPase subunit [Ipomoea nil] | 659 | 002723 (7) | dbj|BAO57286.1| | 6e-62 | V-type proton ATPase subunit [Ipomoea nil] |
| JMSF007M16 | Sequence | 218 | 004974 (2) | 685 | 002723 (7) | dbj|BAO57286.1| | 1e-116 | V-type proton ATPase subunit [Ipomoea nil] | |||
| JMSF020B13 | Sequence | 680 | 011618 (8) | dbj|BAO57286.1| | 5e-115 | V-type proton ATPase subunit [Ipomoea nil] | 782 | 002723 (7) | dbj|BAO57286.1| | 1e-117 | V-type proton ATPase subunit [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
rJMSF020B13+ CTCTGCTTGCT
____________________________________________________________
consensus CTCTGCTTGCT
. : . : . : . : . : . :
rJMSF007M16+ CCAATTTTCACAGAGAGACTGGNTGGAAAGTTATGAGACGCTCACTACCTATG
rJMSF020B13+ GTTGTTTCCAATTTTCACAGAGAGACTGGTTGGAAAGTTATGAGACGCTCACTACCTATG
____________________________________________________________
consensus GTTGTTTCCAATTTTCACAGAGAGACTGGTTGGAAAGTTATGAGACGCTCACTACCTATG
. : . : . : . : . : . :
rJMSF007M16+ TTGTTCCCAGATCCTCCAAGAAGCTGTATGAGGACAATGAATATTCTCTTTATACTGTAA
rJMSF020B13+ TTGTTCCCAGATCCTCCAAGAAGCTGTATGAGGACAATGAATATTCTCTTTATACTGTAA
rJMFF006F12+ CTCTTTATACTGTAA
rJMFF032N24+ ATACTGTAA
____________________________________________________________
consensus TTGTTCCCAGATCCTCCAAGAAGCTGTATGAGGACAATGAATATTCTCTTTATACTGTAA
. : . : . : . : . : . :
rJMSF007M16+ CACTATTCAGCCGTGATGCTGATAATTTCAGGAATAAGGCGCGTGAAAGAGGCTTCCAAA
rJMSF020B13+ CACTATTCAGCCGTGATGCTGATAATTTCAGGAATAAGGCGCGTGAAAGAGGCTTCCAAA
rJMFF006F12+ CACTATTCAGCCGTGATGCTGATAATTTCAGGAATAAGGCGCGTGAAAGAGGCTTCCAAA
rJMFF040J10+ CTATTCAGCCGTGATGCTGATAATTTCAGGAATAAGGCGCGTGAAAGAGGCTTCCAAA
rJMFF032N24+ CACTATTCAGCCGTGATGCTGATAATTTCAGGAATAAGGCGCGTGAAAGAGGCTTCCAAA
____________________________________________________________
consensus CACTATTCAGCCGTGATGCTGATAATTTCAGGAATAAGGCGCGTGAAAGAGGCTTCCAAA
. : . : . : . : . : . :
rJMSF007M16+ TTCGTGATTTTGAGTATAATCCTGAAACACAAGAAAGTCGGAAGCAGGAGCTGGAAAGAC
rJMSF020B13+ TTCGTGATTTTGAGTATAATCCTGAAACACAAGAAAGTCGGAAGCAGGAGCTGGAAAGAC
rJMFF006F12+ TTCGTGATTTTGAGTATAATCCTGAAACACAAGAAAGTCGGAAGCAGGAGCTGGAAAGAC
rJMFF040J10+ TTCGTGATTTTGAGTATAATCCTGAAACACAAGAAAGTCGGAAGCAGGAGCTGGAAAGAC
rJMFF032N24+ TTCGTGATTTTGAGTATAATCCTGAAACACAAGAAAGTCGGAAGCAGGAGCTGGAAAGAC
rJMFF044K06+ GAAGCAGGAGCTGGAAAGAC
____________________________________________________________
consensus TTCGTGATTTTGAGTATAATCCTGAAACACAAGAAAGTCGGAAGCAGGAGCTGGAAAGAC
. : . : . : . : . : . :
rJMSF007M16+ TGATGCAAGATCAAGAAGCATTCAAAACCTCCCTTTTGCAATGGTGTTATACCAGTTATG
rJMSF020B13+ TGATGCAAGATCAAGAAGCATTCAAAACCTCCCTTTTGCAATGGTGTTATACCAGTTATG
rJMFF006F12+ TGATGCAAGATCAAGAAGCATTCAAAACCTCCCTTTTGCAATGGTGTTATACCAGTTATG
rJMFF040J10+ TGATGCAAGATCAAGAAGCATTCAAAACCTCCCTTTTGCAATGGTGTTATACCAGTTATG
rJMFF032N24+ TGATGCAAGATCAAGAAGCATTCAAAACCTCCCTTTTGCAATGGTGTTATACCAGTTATG
rJMFF044K06+ TGATGCAAGATCAAGAAGCATTCAAAACTTCCCTTTTGCAATGGTGTTATACCAGTTATG
rJMFF049B24+ TGATGCAAGATCAAGAAGCATTCAAAACCTCCCTTTTGCAATGGTGTTATACCAGTTATG
____________________________________________________________
consensus TGATGCAAGATCAAGAAGCATTCAAAACCTCCCTTTTGCAATGGTGTTATACCAGTTATG
. : . : . : . : . : . :
rJMSF007M16+ GAGAGGTTTTCAGCTCCTGGATGCACTTTACTGCTGTGCGNGTATTTGCTGAGAGCATTT
rJMSF020B13+ GAGAGGTTTTCAGCTCCTGGATGCACTTTACTGCTGTGCGTGTATTTGCTGAGAGCATTT
rJMFF006F12+ GAGAGGTTTTCAGCTCCTGGATGTACTTTACTGCTGTGCGTGTATTTGCTGAGAGCATTT
rJMFF040J10+ GAGAGGTTTTCAGCTCCTGGATGCACTTTACTGCTGTGCGTGTATTTGCTGAGAGCATTT
rJMFF032N24+ GAGAGGTTTTCAGCTCCTGGATGCACTTTACTGCTGTGCGTGTATTTGCTGAGAGCATTT
rJMFF044K06+ GAGAGGTTTTCAGCTCCTGGATGTACTTTACTGCTGTGCGTGTATTTGCTGAGAGCATTT
rJMFF049B24+ GAGAGGTTTTCAGCTCCTGGATGCACTTTACTGCTGTGCGTGTATTTGCTGAGAGCATTT
____________________________________________________________
consensus GAGAGGTTTTCAGCTCCTGGATGCACTTTACTGCTGTGCGTGTATTTGCTGAGAGCATTT
. : . : . : . : . : . :
rJMSF007M16+ TGAGATATGGCTTGCCGCCATCGTTTTTGTCTGTTGTCTTGGCACCATCAGTTAAAAGTG
rJMSF020B13+ TGAGATATGGCTTGCCGCCATCGTTTTTGTCTGTTGTCTTGGCACCATCAGTTAAAAGTG
rJMFF006F12+ TGAGATATGGCTTGCCGCCATCGTTTTTGTCTGTTGTCTTGGCACCATCAGTTAAAAGTG
rJMFF040J10+ TGAGATATGGCTTGCCGCCATCGTTTTTGTCTGTTGTCTTGGCACCATCAGTTAAAAGTG
rJMFF032N24+ TGAGATATGGCTTGCCGCCATCGTTTTTGTCTGTTGTCTTGGCACCATCAGTTAAAAGTG
rJMFF044K06+ TGAGATATGGCTTGCCGCCATCGTTTTTGTCTGTTGTCTTGGCACCATCAGTTAAAAGTG
rJMFF049B24+ TGAGATATGGCTTGCCGCCATCGTTTTTGTCTGTTGTCTTGGCACCATCAGTTAAAAGTG
____________________________________________________________
consensus TGAGATATGGCTTGCCGCCATCGTTTTTGTCTGTTGTCTTGGCACCATCAGTTAAAAGTG
. : . : . : . : . : . :
rJMSF007M16+ AGAAAAAAGTGCGTTCTATTCNCGAGTCACTTTGTGACAGCTCAAACAGTACCTACTGGA
rJMSF020B13+ AGAAAAAAGTGCGTTCTATTCTCGAGTCACTTTGTGACAGCTCAAACAGTACCTACTGGA
rJMFF006F12+ AGAAAAAAGTGCGTTCTATTCTCGAGTCACTTTGTGACAGCTCAAACAGTACCTACTGGA
rJMFF040J10+ AGAAAAAAGTGCGTTCTATTCTCGAGTCACTTTGTGACAGCTCAAACAGTACCTACTGGA
rJMFF032N24+ AGAAAAAAGTGCGTTCTATTCTCGAGTCACTTTGTGACAGCTCAAACAGTACCTACTGGA
rJMFF044K06+ AGAAAAAAGTGCGTTCTATTCTCGAGTCACTTTGTGACAGCTCAAACAGTACCTACTGGA
rJMFF049B24+ AGAAAAAAGTGCGTTCTATTCTCGAGTCACTTTGTGACAGCTCAAACAGTACCTACTGGA
____________________________________________________________
consensus AGAAAAAAGTGCGTTCTATTCTCGAGTCACTTTGTGACAGCTCAAACAGTACCTACTGGA
. : . : . : . : . : . :
rJMSF007M16+ AAACNGAGGATGAAGGAGCAGTGGGTGTTTTTGGAGGCGATACAGATGCTCATCCNTATG
rJMSF020B13+ AAACTGAGGATGAAGGAGCAGTGGGTGTTTTTGGAGGCGATACAGATGCTCATCCTTATG
rJMFF006F12+ AAACTGAGGATGAAGGAGCAGTGGGTGTTTTTGGAGGCGATACAGATGCTCATCCTTATG
rJMFF040J10+ AAACTGAGGATGAAGGAGCAGTGGGTGTTTTTGGAGGCGATACAGATGCTCATCCTTATG
rJMFF032N24+ AAACTGAGGATGAAGGAGCAGTGGGTGTTTTTGGAGGCGATACAGATGCTCATCCTTATG
rJMFF044K06+ AAACTGAGGATGAAGGAGCAGTGGGTGTTTTTGGAGGCGATACAGATGCTCATCCTTATG
rJMFF049B24+ AAACTGAGGATGAAGGAGCAGTGGGTGTTTTTGGAGGCGATACAGATGCTCATCCTTATG
____________________________________________________________
consensus AAACTGAGGATGAAGGAGCAGTGGGTGTTTTTGGAGGCGATACAGATGCTCATCCTTATG
. : . : . : . : . : . :
rJMSF007M16+ TCTCGTTTTCCATAAATCTTGTTTGAGTTGAGGCATTGATTGATTTCATTTGGTGGTCTG
rJMSF020B13+ TCTCGTTTTCCATAAATCTTGTTTGAGTTGAGGCATTGATTGATTTCATTTGGTGGTCTG
rJMFF006F12+ TCTCGTTTTCCATAAATCTTGTTTGAGTTGAGGCATTGATTGATTTCATTTGGTGGTCTG
rJMFF040J10+ TCTCGTTTTCCATAAATCTTGTTTGAGTTGAGGCATTGATTGATTTCATTTGGTGGTCTG
rJMFF032N24+ TCTCGTTTTCCATAAATCTTGTTTGAGTTGAGGCATTGATTGATTTCATTTGGTGGTCTG
rJMFF044K06+ TCTCGTTTTCCATAAATCTTGTTTGAGTTGAGGCATTGATTGATTTCATTTGGTGGTCTG
rJMFF049B24+ TCTCGTTTTCCATAAATCTTGTTTGAGTTGAGGCATTGATTGATTTCATTTGGTGGTCTG
____________________________________________________________
consensus TCTCGTTTTCCATAAATCTTGTTTGAGTTGAGGCATTGATTGATTTCATTTGGTGGTCTG
. : . : . : . : . : . :
rJMSF007M16+ ATATATTTGTTCTTTTTGTAGCCTTCTTCAATAAAATAGGAGTGTGATTGGTGAGATTGT
rJMSF020B13+ ATATATTTGTTCTTTTTGTAGCCTTCTTCAATAAAATAGGAGTGTGA-TGGTGAGATTGT
rJMFF006F12+ ATATATTTGTTCTTTTTGTAGCCTTCTTCAATAAAATAGGAGTGTGA-TGGTGAGATTGT
rJMFF040J10+ ATATATTTGTTCTTTTTGTAGCCTTCTTCAATAAAATAGGAGTGTGA-TGGTGAGATTGT
rJMFF032N24+ ATATATTTGTTCTTTTTGTAGCCTTCTTCAATAAAATAGGAGTGTGA-TGGTGAGATTGT
rJMFF044K06+ ATATATTTGTTCTTTTTGTAGCCTTCTTCAATAAAATAGGAGTGTGA-TGGTGAGATTGT
rJMFF049B24+ ATATATTTGTTCTTTTTGTAGCCTTCTTCAATAAAATAGGAGTGTGA-TGGTGAGATTGT
____________________________________________________________
consensus ATATATTTGTTCTTTTTGTAGCCTTCTTCAATAAAATAGGAGTGTGA-TGGTGAGATTGT
. : . : . : . : . : . :
rJMSF007M16+ ACTATACAGAAATTTCCTAAGTTATAGTAATT
rJMSF020B13+ ACTATACAGAAATTTCCTAAGTTATAGTAATTTGTTTGTTAAATGCAGCAGTAGCAGCTG
rJMFF006F12+ ACTATACAGAAATTTCCTAAGTTATAGTAATTTGTTTGTTAAATGCAGCAGTAGCAGCTG
rJMFF040J10+ ACTATACAGAAATTTCCTAAGTTATAGTAATTTGTTTGTTAAATGCAGCAGTAGCAGCTG
rJMFF032N24+ ACTATACAGAAATTTCCTAAGTTATAGTAATTTGTTTGTTAAATGCAGCAGTAGCAGCTG
rJMFF044K06+ ACTATACAGAAATTTCCTAAGTTATAGTAATTTGTTTGTTAAATGCAGCAGTAGCAGCTG
rJMFF049B24+ ACTATACAGAAATTTCCTAAGTTATAGTAATTTGTTTGTTAAATGCAGCAGTAGCAGCTG
____________________________________________________________
consensus ACTATACAGAAATTTCCTAAGTTATAGTAATTTGTTTGTTAAATGCAGCAGTAGCAGCTG
. : . : . : . : . : . :
rJMSF020B13+ CTGCTTGAATTGTAATAATATTCTTTATCCTCATCTCCTCCTATGAGGTCTT
rJMFF006F12+ CTGCTTGAATTGTAATAATATTCTTTATCCTCATCTCCTCCTATGAGGTCTTATTTTCTT
rJMFF040J10+ CTGCTTGAATTGTAATAATATTCTTTATCCTCATCTCCTCCTATGAGGTCTTATTTTCTT
rJMFF032N24+ CTGCTTGAATTGTAATAATATTCTTTATCCTCATCTCCTCCTATGAGGTCTTATTTTCTT
rJMFF044K06+ CTGCTTGAATTGTAATAATATTCTTTATCCTCATCTCCTCCTATGAGGTCTTATTTTCTT
rJMFF049B24+ CTGCTTGAATTGTAATAATATTCTTTATCCTCATCTCCTCCTATGAGGTCTTATTTTCTT
____________________________________________________________
consensus CTGCTTGAATTGTAATAATATTCTTTATCCTCATCTCCTCCTATGAGGTCTTATTTTCTT
. : . : . : . : . : . :
rJMFF006F12+ GAGTTTTAAAATGTATTAAGGTTAAATTGTCCCATTGTT
rJMFF040J10+ GAGTTTTAAAATGTATTAAGGTTAAATTGTCCCATTGTT
rJMFF032N24+ GAGTTTTAAAATGTATTAAGGTTAAATTGTCCCATTGTT
rJMFF044K06+ GAGTTTTAAAATGTATTAAGGTTAAATTGTCCCATTG-TTGGAGCTACAAAGTATAAATT
rJMFF049B24+ GAGTTTTAAAATGTATTAAGGTTAAATTGTCCCATTGTTTGGAGCTACAAAGTATAAATT
____________________________________________________________
consensus GAGTTTTAAAATGTATTAAGGTTAAATTGTCCCATTGTTTGGAGCTACAAAGTATAAATT
. : . : . : . : . : . :
rJMFF044K06+ AAAGGGAGTATTAAATACCAAAAAAAAAAAAAAA
rJMFF049B24+ AAAGGGAGTATTAAATACCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus AAAGGGAGTATTAAATACCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG