Contig 002715:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003O08Sequence539010673 (6)ref|XP_006351772.1|159PREDICTED: uncharacterized protein LOC102578792 [Solanum tuberosum]733002715 (5)ref|XP_009615990.1|171PREDICTED: uncharacterized protein LOC104108615 [Nicotiana tomentosiformis]
JMFF048D07Sequence388010673 (6)ref|XP_006351772.1|95.5PREDICTED: uncharacterized protein LOC102578792 [Solanum tuberosum]244002715 (5)
JMFN041E14Sequence621002715 (5)ref|XP_009790037.1|96.7PREDICTED: uncharacterized protein LOC104237564 [Nicotiana sylvestris]
JMSF020G13Sequence671010673 (6)ref|XP_006351772.1|159PREDICTED: uncharacterized protein LOC102578792 [Solanum tuberosum]771002715 (5)ref|XP_006351772.1|196PREDICTED: uncharacterized protein LOC102578792 [Solanum tuberosum]
JMSF026P23Sequence611010673 (6)ref|XP_006351772.1|142PREDICTED: uncharacterized protein LOC102578792 [Solanum tuberosum]689002715 (5)ref|XP_009790037.1|165PREDICTED: uncharacterized protein LOC104237564 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN041E14-                                                                   GATC
rJMSF020G13+            TCGGNTGAGCCGCGGCTTCAAGGCGCGTTGGTCNAAGTCTCAGCATTCTTATTGGATC
rJMFF003O08+                                                                  GATC
                      ____________________________________________________________
consensus               TCGGNTGAGCCGCGGCTTCAAGGCGCGTTGGTCNAAGTCTCAGCATTCTTATTGGATC
 
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rJMSF026P23+                                  CAGATGAAGAAAGCATGAAATATGATGAACTTAGAC
JMFN041E14-           AAGCAAGACAGTTGTGGAAAGAGGCAGATGAAGAAAGCATGAAATATGATGAACTAAGAC
rJMSF020G13+          AAGCAAGACAGTTGTGGAAAGAGGCAGATGAAGAAAGCATGAAATATGATGAACTAAGAC
rJMFF003O08+          AAGCAAGACAGTTGTGGAAAGAGGCAGATGAAGAAAGCATGAAATATGATGAACTAAGAC
                      ____________________________________________________________
consensus             AAGCAAGACAGTTGTGGAAAGAGGCAGATGAAGAAAGCATGAAATATGATGAACTAAGAC
 
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rJMSF026P23+          AAACAAACATGAATATGCTGGTGTCATGGCTGCCACTGCTGTGCCGCGCAAGCAATGGCA
JMFN041E14-           AAACAAACATGAATATGCTGGTGTCATGGCTGCCACTGCTGTGCCGCGCAAGCAATGGCA
rJMSF020G13+          AAACAAACATGAATATGCTGGTGTCATGGCTGCCACTGCTGTGCCGCGCAAGCAATGGCA
rJMFF003O08+          AAACAAACATGAATATGCTGGTGTCATGGCTGCCACTGCTGTGCCGCGCAAGCAATGGCA
                      ____________________________________________________________
consensus             AAACAAACATGAATATGCTGGTGTCATGGCTGCCACTGCTGTGCCGCGCAAGCAATGGCA
 
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rJMSF026P23+          CAGACACTCCGG--TTTTGAGCATCAACAAGAGAGCGGAGCTAGAGAGAACGTTGGAGCT
JMFN041E14-           CAGACACTCCGGGATTTAGAGCATCAACAACAGAGCGGAGCTAGAGAGAACGTTGGAGCT
rJMSF020G13+          CAGACACTCCGG--TTTTGAGCATCAACAAGAGAGCGGAGCTAGAGAGAACGTTGGAGCT
rJMFF003O08+          CAGACACTCCGG--TTTTGAGCATCAACAAGAGAGCGGAGCTAGAGAGAACGTTGGAGCT
                      ____________________________________________________________
consensus             CAGACACTCCGG--TTTTGAGCATCAACAAGAGAGCGGAGCTAGAGAGAACGTTGGAGCT
 
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rJMSF026P23+          GATAATAAACACGTTGGATGAAGAAGAGCAAGAAAAAGTGCTGTCCCTTTGGCTCCAGCA
JMFN041E14-           GATAATAAACACGTTGGATGAAGAATAGCAAGAAAAAATGCTGTCCCTTTGGCTCCAGAA
rJMSF020G13+          GATAATAAACACGTTGGATGAAGAAGAGCAAGAAAAAGTGCTGTCCCTTTGGCTCCAGCA
rJMFF003O08+          GATAATAAACACGTTGGATGAAGAAGAGCAAGAAAAAGTGCTGTCCCTTTGGCTCCAGCA
                      ____________________________________________________________
consensus             GATAATAAACACGTTGGATGAAGAAGAGCAAGAAAAAGTGCTGTCCCTTTGGCTCCAGCA
 
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rJMSF026P23+          CTTCACTTATTGCCCGTCATCCGACTGGCCAAACCTCCATGATATTTACACTCGTTGGTG
JMFN041E14-           CTTCACTAATTGCCCGTCATCCGACTGGCCAAACCTCCATGATATTTACACTCGTTGGTG
rJMSF020G13+          CTTCACTTATTGCCCGTCATCCGACTGGCCAAACCTCCATGATATTTACACTCGTTGGTG
rJMFF003O08+          CTTCACTTATTGCCCGTCATCCGACTGGCCAAACCTCCATGATATTTACACTCGTTGGTG
                      ____________________________________________________________
consensus             CTTCACTTATTGCCCGTCATCCGACTGGCCAAACCTCCATGATATTTACACTCGTTGGTG
 
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rJMSF026P23+          CACTGCTTCTCGCACCTCCCTCTTGCTCCTCAACTGAAACACCGGTACTGGTACTATACA
JMFN041E14-           CACTGCTTCACGCACCTCCCTCTTGATCCTCAACTGAAACACCGGTACTGGTACTATACA
rJMSF020G13+          CACTGCTTCTCGCACCTCCCTCTTGCTCCTCAACTGAAACACCGGTACTGGTACTATACA
rJMFF003O08+          CACTGCTTCTCGCACCTCCCTCTTGCTCCTCAACTGAAACACCGGTACTGGTACTATACA
                      ____________________________________________________________
consensus             CACTGCTTCTCGCACCTCCCTCTTGCTCCTCAACTGAAACACCGGTACTGGTACTATACA
 
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rJMSF026P23+          TTCTTGGTTCAAATTGATGCTTTAGTTAACTCCATTTTACTGCCTGAGTTCCTATGGAGT
JMFN041E14-           TTCTTGGTTCAAATTGATGCTTTAATTAACTCCATTTTACTGCCTGAGTTCCTATGGAGT
rJMSF020G13+          TTCTTGGTTCAAATTGATGCTTTAGTTAACTCCATTTTACTGCCTGAGTTCCTATGGAGT
rJMFF003O08+          TTCTTGGTTCAAATTGATGCTTTAGTTAACTCCATTTTACTGCCTGAGTTCCTATGGAGT
                      ____________________________________________________________
consensus             TTCTTGGTTCAAATTGATGCTTTAGTTAACTCCATTTTACTGCCTGAGTTCCTATGGAGT
 
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rJMSF026P23+          CTTAAATCTTTGAAGATGAGAGTTGAAGCTCCTGTGAATACCAAAGCTCCATTACGCCCA
JMFN041E14-           CTTAAATCTTTGAAGATGATAGTTGAAGCTCCTGTGAATACCAAAGCTCCATTACGCCCA
rJMSF020G13+          CTTAAATCTTTGAAGATGAGAGTTGAAGCTCCTGTGAATACCAAAGCTCCATTACGCCCA
rJMFF003O08+          CTTAAATCTTTGAAGATGAGAGTTGAAGCTCCTGTGAATACCAAAGCTCCATTACGCCCA
                      ____________________________________________________________
consensus             CTTAAATCTTTGAAGATGAGAGTTGAAGCTCCTGTGAATACCAAAGCTCCATTACGCCCA
 
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rJMSF026P23+          AATAGGCATAAAATGATCGAGATTCCATAGTGAACAACCTCGTGGAAGACTAGTACTACC
JMFN041E14-           AATATGCATAAAATGATCGAGATTCCATATTGAACAACCTCGAGGAAGACTAGTACTACC
rJMSF020G13+          AATAGGCATAAAATGATCGAGATTCCATAGTGAACAACCTCGTGGAAGACTAGTACTACC
rJMFF003O08+          AATAGGCATAAAATGATCGAGATTCCATAGTGAACAACCTCGTGGAAGACTAGTACTACC
rJMFF048D07+                                                                  TACC
                      ____________________________________________________________
consensus             AATAGGCATAAAATGATCGAGATTCCATAGTGAACAACCTCGTGGAAGACTAGTACTACC
 
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rJMSF026P23+          CGAGCTTCATTTCTACTAGTTTGGACCTGTTCTTCACCGATTAGGTAGCACAGGGACTTT
JMFN041E14-           CGAGCTTCATTTCTACTAGTTTGGACCTGATCTTC-CCGATTATGTAGCACAGGGACTTT
rJMSF020G13+          CGAGCTTCATTTCTACTAGTTTGGACCTGTTCTTCACCGATTAGGTAGCACAGGGACTTT
rJMFF003O08+          CGAGCTTCATTTCTACTAGTTTGGACCTGTTCTTCACCGATTAGGTAGCACAGGGACTTT
rJMFF048D07+          CGAGCTTCATTTCTACTAGTTTGGACCTGTTCTTCACCGATTAGGTAGCACAGGGACTTT
                      ____________________________________________________________
consensus             CGAGCTTCATTTCTACTAGTTTGGACCTGTTCTTCACCGATTAGGTAGCACAGGGACTTT
 
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rJMSF026P23+          AGCAATCAACCATATGTCAATTCAGTCTTGCTCTATAGTTTTCACGAAACATTTAGTCAG
JMFN041E14-           AGCA                                                        
rJMSF020G13+          AGCAATCAACCATATGTCAATTCAGTCTTGCTCTATAGTTTTCACGAAACATTTAGTCAG
rJMFF003O08+          AGCAATCAACCATATGTCAATTCAGTCTTGCTCTATAGTTTTCACGAAACATTTAGTCAG
rJMFF048D07+          AGCAATCAACCATATGTCAATTCAGTCTTGCTCTATAGTTTTCACGAAACATTTAGTCAG
                      ____________________________________________________________
consensus             AGCAATCAACCATATGTCAATTCAGTCTTGCTCTATAGTTTTCACGAAACATTTAGTCAG
 
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rJMSF026P23+          GTGTTCTATTGTTGTAGTGCCTGTCAATTACTTGCAAAATCATG                
rJMSF020G13+          GTGTTCTATTGTTGTAGTGCCTGTCAATTACTTGCAAAATCATG                
rJMFF003O08+          GTGTTCTATTGTTGTAGTGCCTGTCAATTACTTGCAAAATCATGTAAAATTACAGGATAT
rJMFF048D07+          GTGTTCTATTGTTGTAGTGCCTGTCAATTACTTGCAAAATCATGTAAAATTACAGGATAT
                      ____________________________________________________________
consensus             GTGTTCTATTGTTGTAGTGCCTGTCAATTACTTGCAAAATCATGTAAAATTACAGGATAT
 
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rJMFF003O08+          TCTCATTCATA                                                 
rJMFF048D07+          TCTCATTCATATATATATATTACTTCTCAGCTAAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TCTCATTCATATATATATATTACTTCTCAGCTAAAAAAAAAAAAAAAAACTCTCCAGGGT