Contig 002712:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047P07Sequence612013112 (5)emb|CAN74575.1|4e-41hypothetical protein VITISV_000297 [Vitis vinifera]610002712 (2)gb|KJB34632.1|6e-21hypothetical protein B456_006G076100 [Gossypium raimondii]
JMSF039J13Sequence656022201emb|CAN74575.1|3e-38hypothetical protein VITISV_000297 [Vitis vinifera]789002712 (2)gb|KJB34632.1|2e-37hypothetical protein B456_006G076100 [Gossypium raimondii]

Alignment

This contig is upended


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rJMSF039J13+                                                                    TG
                      ____________________________________________________________
consensus                                                                       TG
 
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rJMSF039J13+          AAAGGCCAGGAAACTGGTCAAAAAACCATGTCTCTAACTCAAATTCCTTCGTGACTGGCA
                      ____________________________________________________________
consensus             AAAGGCCAGGAAACTGGTCAAAAAACCATGTCTCTAACTCAAATTCCTTCGTGACTGGCA
 
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rJMSF039J13+          TCCCTAGCATTAAAAGTACAAGCATCCCTAGTACAAAAAGTACAGGCATCCCTAGCATAC
                      ____________________________________________________________
consensus             TCCCTAGCATTAAAAGTACAAGCATCCCTAGTACAAAAAGTACAGGCATCCCTAGCATAC
 
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rJMSF039J13+          AAAATACAAGCATCCCTAGCATAAAAAGTGTGGGATCGAAACAACAAGAAGTCGGGTCAT
                      ____________________________________________________________
consensus             AAAATACAAGCATCCCTAGCATAAAAAGTGTGGGATCGAAACAACAAGAAGTCGGGTCAT
 
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rJMSF039J13+          CACCAGAGGATGACAGTATTAATGAGATATTGGAGAAGAGGCCTTGATTGCTGCCCACAG
                      ____________________________________________________________
consensus             CACCAGAGGATGACAGTATTAATGAGATATTGGAGAAGAGGCCTTGATTGCTGCCCACAG
 
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rJMSF039J13+          AAGAGAAATTGAAGACACCATGGAGATTGTTCGTGAAGAGATGAAACTGTTGGCTGAAGT
rJMFF047P07+                                                            TGGCTGAAGT
                      ____________________________________________________________
consensus             AAGAGAAATTGAAGACACCATGGAGATTGTTCGTGAAGAGATGAAACTGTTGGCTGAAGT
 
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rJMSF039J13+          TGATCAGCCTGGGAGTCATATTGATAATTATGTGACGCAGTTGAGCATTGTGCTCTCACG
rJMFF047P07+          TGATCAGCCTGGGAGTCATATTGATAATTATGTGACGCAGTTGAGCATTGTGCTCTCACG
                      ____________________________________________________________
consensus             TGATCAGCCTGGGAGTCATATTGATAATTATGTGACGCAGTTGAGCATTGTGCTCTCACG
 
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rJMSF039J13+          CAAAGCTGCAAGCCTGGTTAGCCTCCAAGCTTGCCTTGCAAGGTTTCAACACCGGCTTAA
rJMFF047P07+          CAAAGCTGCAAGCCTGGTTAGCCTCCAAGCTTGCCTTGCAAGGTTTCAACACCGGCTTAA
                      ____________________________________________________________
consensus             CAAAGCTGCAAGCCTGGTTAGCCTCCAAGCTTGCCTTGCAAGGTTTCAACACCGGCTTAA
 
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rJMSF039J13+          AGAACAGGAAATATTGAGTAGAAAGAGAGGGCTATGATGCCAGGTGATACTCACAAACCT
rJMFF047P07+          AGAACAGGAAATATTGAGTAGAAAGAGAGGGCTATGATGCCAGGTGATACTCACAAACCT
                      ____________________________________________________________
consensus             AGAACAGGAAATATTGAGTAGAAAGAGAGGGCTATGATGCCAGGTGATACTCACAAACCT
 
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rJMSF039J13+          TGTATCACTTGTCACAGTGTAGTTTTTAAAGATATAGCACTCTAAAATGCATCATTTTAA
rJMFF047P07+          TGTATCACTTGTCACAGTGTAGTTTTTAAAGATATAGCACTCTAAAATGCATCATTTTAA
                      ____________________________________________________________
consensus             TGTATCACTTGTCACAGTGTAGTTTTTAAAGATATAGCACTCTAAAATGCATCATTTTAA
 
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rJMSF039J13+          AATCGTGCACATAAATCATCAACTGAATTTGTGGTGTGATGATTCTGTGCTTGAACAAAA
rJMFF047P07+          AATCGTGCACATAAATCATCAACTGAATTTGTGGTGTGATGATTCTGTGCTTGAACAAAA
                      ____________________________________________________________
consensus             AATCGTGCACATAAATCATCAACTGAATTTGTGGTGTGATGATTCTGTGCTTGAACAAAA
 
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rJMSF039J13+          AAGTACTTAAGGCCTCAATAGTGCTCCTGTGAAGCAGTTGTGCGGCTTCAAGGCCAGTTA
rJMFF047P07+          AAGTACTTAAGGCCTCAATAGTGCTCCTGTGAAGCAGTTGTGCGGCTTCAAGGCCAGTTA
                      ____________________________________________________________
consensus             AAGTACTTAAGGCCTCAATAGTGCTCCTGTGAAGCAGTTGTGCGGCTTCAAGGCCAGTTA
 
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rJMSF039J13+          GCTATGTTGAATTCTTTTGTGATGAAGGTTTGCATTCCAAATATCAACAACTGCAAAGCT
rJMFF047P07+          GCTATGTTGAATTCTTTTGTGATGAAGGTTTGCATTCCAAATATCAACAACTGCAAAGCT
                      ____________________________________________________________
consensus             GCTATGTTGAATTCTTTTGTGATGAAGGTTTGCATTCCAAATATCAACAACTGCAAAGCT
 
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rJMSF039J13+          TGTAATTATCAGCCAGTTAGCTATGTTGAATTCTTTTGTGAATGAAGGTTTGCATTCCAA
rJMFF047P07+          TGTAATTATCAGCCAGTTAGCTATGTTGAATTCTTTTGTGAATGAAGGTTTGCATTCCAA
                      ____________________________________________________________
consensus             TGTAATTATCAGCCAGTTAGCTATGTTGAATTCTTTTGTGAATGAAGGTTTGCATTCCAA
 
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rJMSF039J13+          ATATCAA                                                     
rJMFF047P07+          ATATCAACAACTGCAAAGCTTGTAATTATCAAATGTTGTTTCTTGTAAATTAGTCGAATA
                      ____________________________________________________________
consensus             ATATCAACAACTGCAAAGCTTGTAATTATCAAATGTTGTTTCTTGTAAATTAGTCGAATA
 
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rJMFF047P07+          TTTTGATTGATGAGGTTCAGATTTCAGTCTTTTTGATGAATATACTAACTTGGCCCCCCG
                      ____________________________________________________________
consensus             TTTTGATTGATGAGGTTCAGATTTCAGTCTTTTTGATGAATATACTAACTTGGCCCCCCG