| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005K08 | Sequence | 462 | 002707 (8) | ref|XP_009618347.1| | 9e-38 | PREDICTED: RPM1-interacting protein 4 [Nicotiana tomentosiformis] | 569 | 002707 (8) | ref|XP_009618347.1| | 3e-37 | PREDICTED: RPM1-interacting protein 4 [Nicotiana tomentosiformis] |
| JMFF027N11 | Sequence | 568 | 002707 (8) | ref|XP_009618347.1| | 3e-37 | PREDICTED: RPM1-interacting protein 4 [Nicotiana tomentosiformis] | 565 | 002707 (8) | ref|XP_009618347.1| | 3e-37 | PREDICTED: RPM1-interacting protein 4 [Nicotiana tomentosiformis] |
| JMFF047H07 | Sequence | 591 | 002707 (8) | ref|XP_009618347.1| | 4e-37 | PREDICTED: RPM1-interacting protein 4 [Nicotiana tomentosiformis] | 532 | 002707 (8) | ref|XP_009618347.1| | 4e-37 | PREDICTED: RPM1-interacting protein 4 [Nicotiana tomentosiformis] |
| JMSF010E08 | Sequence | 311 | 002707 (8) | ref|XP_009618347.1| | 2e-38 | PREDICTED: RPM1-interacting protein 4 [Nicotiana tomentosiformis] | 489 | 002707 (8) | ref|XP_009618347.1| | 2e-37 | PREDICTED: RPM1-interacting protein 4 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF027N11+ ACGCCAACTCATACAAACAGAGAGAGAAAGAGAAAGAGAAACAAATCGTATCAACCA
rJMSF010E08+ GTATCAACCA
JMFF005K08- ACGCCAACTCATACAAACAGAGAGAGAAAGAGAAAGAGAAACAAATCGTATCAACCA
JMSF010E08- GTATCAACCA
JMFF027N11- ACGCCAACTCATACAAACAGAGAGAGAAAGAGAAAGAGAAACAAATCGTATCAACCA
rJMFF005K08+ ACGCCAACTCATACAAACAGAGAGAGAAAGAGAAAGAGAAACAAATCGTATCAACCA
JMFF047H07- ACGCCAACTCATACAAACAGAGAGAGAAAGAGAAAGAGAAACAAATCGTATCAACCA
____________________________________________________________
consensus ACGCCAACTCATACAAACAGAGAGAGAAAGAGAAAGAGAAACAAATCGTATCAACCA
. : . : . : . : . : . :
rJMFF027N11+ AAAGCTCTCCCTCTCTTTCTCTCTCATGGCGGAAATGGGGCGACCATTGCCAAAGTTTGG
rJMSF010E08+ AAAGCTCTCCCTCTCTTTCTCTCTCATGGCGGAAATGGGGCGACCATTGCCAAAGTTTGG
JMFF005K08- AAAGCTCTCCCTCTCTTTCTCTCTCATGGCGGAAATGGGGCGACCATTGCCAAAGTTTGG
JMSF010E08- AAAGCTCTCCCTCTCTTTCTCTCTCATGGCGGAAATGGGGCGACCATTGCCAAAGTTTGG
JMFF027N11- AAAGCTCTCCCTCTCTTTCTCTCTCATGGCGGAAATGGGGCGACCATTGCCAAAGTTTGG
rJMFF005K08+ AAAGCTCTCCCTCTCTTTCTCTCTCATGGCGGAAATGGGGCGACCATTGCCAAAGTTTGG
JMFF047H07- AAAGCTCTCCCTCTCTTTCTCTCTCATGGCGGAAATGGGGCGACCATTGCCAAAGTTTGG
rJMFF047H07+ CCCTCTCTTTCTCTCTCATGGCGGAAATGGGGCGACCATTGCCAAAGTTTGG
____________________________________________________________
consensus AAAGCTCTCCCTCTCTTTCTCTCTCATGGCGGAAATGGGGCGACCATTGCCAAAGTTTGG
. : . : . : . : . : . :
rJMFF027N11+ TGAGTGGGATGTCAATGATCCAGCTTCAGCAGAGGGGTTCACGGTGATTTTCAACAAAGC
rJMSF010E08+ TGAGTGGGATGTCAATGATCCAGCTTCAGCAGAGGGGTTCACGGTGATTTTCAACAAAGC
JMFF005K08- TGAGTGGGATGTCAATGATCCAGCTTCAGCAGAGGGGTTCACGGTGATTTTCAACAAAGC
JMSF010E08- TGAGTGGGATGTCAATGATCCAGCTTCAGCAGAGGGGTTCACGGTGATTTTCAACAAAGC
JMFF027N11- TGAGTGGGATGTCAATGATCCAGCTTCAGCAGAGGGGTTCACGGTGATTTTCAACAAAGC
rJMFF005K08+ TGAGTGGGATGTCAATGATCCAGCTTCAGCAGAGGGGTTCACGGTGATTTTCAACAAAGC
JMFF047H07- TGAGTGGGATGTCAATGATCCAGCTTCAGCAGAGGGGTTCACGGTGATTTTCAACAAAGC
rJMFF047H07+ TGAGTGGGATGTCAATGATCCAGCTTCAGCAGAGGGGTTCACGGTGATTTTCAACAAAGC
____________________________________________________________
consensus TGAGTGGGATGTCAATGATCCAGCTTCAGCAGAGGGGTTCACGGTGATTTTCAACAAAGC
. : . : . : . : . : . :
rJMFF027N11+ TAGAAATGAGAAAAGGGCAGGTGGCAGGCCAGAGTCGCCACCAAAGAGAGATCCTGGATA
rJMSF010E08+ TAGAAATGAGAAAAGGGCAGGTGGCAGGCCAGAGTCGCCACCAAAGAGAGATCCTGGATA
JMFF005K08- TAGAAATGAGAAAAGGGCAGGTGGCAGGCCAGAGTCGCCACCAAAGAGAGATCCTGGATA
JMSF010E08- TAGAAATGAGAAAAGGGCAGGTGGCAGGCCAGAGTCGCCACCAAAGAGAGATCCTGGATA
JMFF027N11- TAGAAATGAGAAAAGGGCAGGTGGCAGGCCAGAGTCGCCACCAAAGAGAGATCCTGGATA
rJMFF005K08+ TAGAAATGAGAAAAGGGCAGGTGGCAGGCCAGAGTCGCCACCAAAGAGAGATCCTGGATA
JMFF047H07- TAGAAATGAGAAAAGGGCAGGTGGCAGGCCAGAGTCGCCACCAAAGAGAGATCCTGGATA
rJMFF047H07+ TAGAAATGAGAAAAGGGCAGGTGGCAGGCCAGAGTCGCCACCAAAGAGAGATCCTGGATA
____________________________________________________________
consensus TAGAAATGAGAAAAGGGCAGGTGGCAGGCCAGAGTCGCCACCAAAGAGAGATCCTGGATA
. : . : . : . : . : . :
rJMFF027N11+ TAAACGTAAAGCTACTCTTGGAAAGCCTCAATCAAAGAAATGGTTCTGTTGCATGCAATC
rJMSF010E08+ TAAACGTAAAGCTACTCTTGGAAAGCCTCAATCAAAGAAATGGTTCTGTTGCATGCAATC
JMFF005K08- TAAACGTAAAGCTACTCTTGGAAAGCCTCAATCAAAGAAATGGTTCTGTTGCATGCAATC
JMSF010E08- TAAACGTAAAGCTACTCTTGGAAAGCCTCAATCAAAGAAATGGTTCTGTTGCATGCAATC
JMFF027N11- TAAACGTAAAGCTACTCTTGGAAAGCCTCAATCAAAGAAATGGTTCTGTTGCATGCAATC
rJMFF005K08+ TAAACGTAAAGCTACTCTTGGAAAGCCTCAATCAAAGAAATGGTTCTGTTGCATGCAATC
JMFF047H07- TAAACGTAAAGCTACTCTTGGAAAGCCTCAATCAAAGAAATGGTTCTGTTGCATGCAATC
rJMFF047H07+ TAAACGTAAAGCTACTCTTGGAAAGCCTCAATCAAAGAAATGGTTCTGTTGCATGCAATC
____________________________________________________________
consensus TAAACGTAAAGCTACTCTTGGAAAGCCTCAATCAAAGAAATGGTTCTGTTGCATGCAATC
. : . : . : . : . : . :
rJMFF027N11+ TTCTCCTGCTGAATGATGAACACTCTCTACGCTCATTTGTGCTGTAAAGATAATCTCCAG
rJMSF010E08+ TTCTCCTGCTGAATGATGAACACTCTCTACGCTCATTTGTGCTGTAAAGATAATCTCCAG
JMFF005K08- TTCTCCTGCTGAATGATGAACACTCTCTACGCTCATTTGTGCTGTAAAGATAATCTCCAG
JMSF010E08- TTCTCCTGCTGAATGATGAACACTCTCTACGCTCATTTGTGCTGTAAAGATAATCTCCA
JMFF027N11- TTCTCCTGCTGAATGATGAACACTCTCTACGCTCATTTGTGCTGTAAAGATAATCTCCAG
rJMFF005K08+ TTCTCCTGCTGAATGATGAACACTCTCTACGCTCATTTGTGCTGTAAAGATAATCTCCAG
JMFF047H07- TTCTCCTGCTGAATGATGAACACTCTCTACGCTCATTTGTGCTGTAAAGATAATCTCCAG
rJMFF047H07+ TTCTCCTGCTGAATGATGAACACTCTCTACGCTCATTTGTGCTGTAAAGATAATCTCCAG
____________________________________________________________
consensus TTCTCCTGCTGAATGATGAACACTCTCTACGCTCATTTGTGCTGTAAAGATAATCTCCAG
. : . : . : . : . : . :
rJMFF027N11+ AAACCACCGTGCAATTCATGTGTGTTCCACAAGACCGGAGCTCTAACTACACTGTGATAA
rJMSF010E08+ AAACCACCGTGCAATTCATGTGTGTTCCACAAGACCGGAGCTCTAACTACACTGTGATAA
JMFF005K08- AAACCACCGTGCAATTCATGTGTGTTCCACAAGACCGGAGCTCTAACTACACTGTGATAA
JMFF027N11- AAACCACCGTGCAATTCATGTGTGTTCCACAAGACCGGAGCTCTAACTACACTGTGATAA
rJMFF005K08+ AAACCACCGTGCAATTCATGTGTGTTCCACAAGACCGGAGCTCTAACTACACTGTGATAA
JMFF047H07- AAACCACCGTGCAATTCATGTGTGTTCCACAAGACCGGAGCTCTAACTACACTGTGATAA
rJMFF047H07+ AAACCACCGTGCAATTCATGTGTGTTCCACAAGACCGGAGCTCTAACTACACTGTGATAA
____________________________________________________________
consensus AAACCACCGTGCAATTCATGTGTGTTCCACAAGACCGGAGCTCTAACTACACTGTGATAA
. : . : . : . : . : . :
rJMFF027N11+ GTCATGCTGGAATTTCTTATTGATTATTTTTTTTTCTTTTTGGTTTGAGAAGTGATAGTG
rJMSF010E08+ GTCATGCTGGAATTTCTTATTGATTATTTTTTTTTCTTTTTGGTTTGAGAAGTGATAGTG
JMFF005K08- GTCATGCTGGAATTTCTTATTGATTATTTTTTTTTCTTTTTGGTT
JMFF027N11- GTCATGCTGGAATTTCTTATTGATTATTTTTTTTTCTTTTTGGTTTGAGAAGTGATAGTG
rJMFF005K08+ GTCATGCTGGAATTTCTTATTGATTATTTTTTTTTCTTTTTGGTTTGAGAAGTGATAGTG
JMFF047H07- GTCATGCTGGAATTTCTTATTGATTATTTTTTTTTCTTTTTGGTTTGAGAAGTGATAGTG
rJMFF047H07+ GTCATGCTGGAATTTCTTATTGATTATTTTTTTTTCTTTTTGGTTTGAGAAGTGATAGTG
____________________________________________________________
consensus GTCATGCTGGAATTTCTTATTGATTATTTTTTTTTCTTTTTGGTTTGAGAAGTGATAGTG
. : . : . : . : . : . :
rJMFF027N11+ TGCACCAAGTTGTTCTATTGTTCTGTTTTTATTTTCTATCATCGTTAAATCGAGGTCATG
rJMSF010E08+ TGCACCAAGTTGTTCTATTGTTCTGTTTTTATTTTCTATCATCGTTAAATCGAGGTC
JMFF027N11- TGCACCAAGTTGTTCTATTGTTCTGTTTTTATTTTCTATCATCGTTAAATCGAGGTCATG
rJMFF005K08+ TGCACCAAGTTGTTCTATTGTTCTGTTTTTATTTTCTATCATCGTTAAATCGAGGTCATG
JMFF047H07- TGCACCAAGTTGTTCTATTGTTCTGTTTTTATTTTCTATCATCGTTAAATCGAGGTCATG
rJMFF047H07+ TGCACCAAGTTGTTCTATTGTTCTGTTTTTATTTTCTATCATCGTTAAATCGAGGTCATG
____________________________________________________________
consensus TGCACCAAGTTGTTCTATTGTTCTGTTTTTATTTTCTATCATCGTTAAATCGAGGTCATG
. : . : . : . : . : . :
rJMFF027N11+ GTGAATCTCTCTTTAATGTATT
JMFF027N11- GTGAATCTCTCTTTAATGTATTTGCATAATG
rJMFF005K08+ GTGAATCTCTCTTTAATGTATTTGCATAATG
JMFF047H07- GTGAATCTCTCTTTAATGTATTTGCATAATGGATTTGAATGCTATTTACTTGTC
rJMFF047H07+ GTGAATCTCTCTTTAATGTATTTGCATAATGGATTTGAATGCTATTTACTTGTCACGGAT
____________________________________________________________
consensus GTGAATCTCTCTTTAATGTATTTGCATAATGGATTTGAATGCTATTTACTTGTCACGGAT