| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF030J19 | Sequence | 438 | 000265 (5) | emb|CDP15344.1| | 1e-20 | unnamed protein product [Coffea canephora] | 661 | 002706 (4) | ref|XP_009788755.1| | 1e-93 | PREDICTED: cytochrome P450 76A2-like [Nicotiana sylvestris] |
| JMFF047G12 | Sequence | 360 | 000265 (5) | emb|CDP15344.1| | 6e-10 | unnamed protein product [Coffea canephora] | 351 | 002706 (4) | ref|XP_009788755.1| | 3e-21 | PREDICTED: cytochrome P450 76A2-like [Nicotiana sylvestris] |
| JMSF003O18 | Sequence | 289 | 000265 (5) | emb|CDP15344.1| | 4e-04 | unnamed protein product [Coffea canephora] | 714 | 002706 (4) | ref|XP_009788755.1| | 1e-101 | PREDICTED: cytochrome P450 76A2-like [Nicotiana sylvestris] |
| JMSF009F22 | Sequence | 412 | 000265 (5) | emb|CDP15344.1| | 2e-26 | unnamed protein product [Coffea canephora] | 763 | 002706 (4) | ref|XP_009788755.1| | 2e-101 | PREDICTED: cytochrome P450 76A2-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF003O18+ GAGGTCAAAGGTTTCGAAACT
____________________________________________________________
consensus GAGGTCAAAGGTTTCGAAACT
. : . : . : . : . : . :
rJMSF003O18+ TACATGTATTAATTTTAAAAATTGTGATTTTGGTAGGGCCACATTTATTTACTAGAACAG
rJMSF009F22+ AGGGCCACATTTATTTACTAGAACAG
____________________________________________________________
consensus TACATGTATTAATTTTAAAAATTGTGATTTTGGTAGGGCCACATTTATTTACTAGAACAG
. : . : . : . : . : . :
rJMSF003O18+ GGCCACCAAAATTTAAAATACGGCCCTGACTAGCAGCACGGTGGAATGGGCACTAACGGA
rJMSF009F22+ GGCCACCAAAATTTAAAATACGGCCCTGACTAGCAGCACGGTGGAATGGGCACTAACGGA
____________________________________________________________
consensus GGCCACCAAAATTTAAAATACGGCCCTGACTAGCAGCACGGTGGAATGGGCACTAACGGA
. : . : . : . : . : . :
rJMSF003O18+ GCTCCTGCGAAACCCGAAAGCAATGACCAAAGCAAAAGAAGAGATTCGTGGAATTGTGGG
rJMSF009F22+ GCTCCTGCGAAACCCGAAAGCAATGACCAAAGCAAAAGAAGAGATTCGTGGAATTGTGGG
rJMFF030J19+ TGCGAAACCCGAAAGCAATGACCAAAGCAAAAGAAGAGATTCGTGGAATTGTGGG
____________________________________________________________
consensus GCTCCTGCGAAACCCGAAAGCAATGACCAAAGCAAAAGAAGAGATTCGTGGAATTGTGGG
. : . : . : . : . : . :
rJMSF003O18+ ACCAACCCGGAGATTCGAGGAATCCGACATTGATAATCTGCAGTATCTACAAGCTGTGGT
rJMSF009F22+ ACCAACCCGGAGATTCGAGGAATCCGACATTGATAATCTGCAGTATCTACAAGCTGTGGT
rJMFF030J19+ ACCAACCCGGAGATTCGAGGAATCCGACATTGATAATCTGCAGTATCTACAAGCTGTGGT
____________________________________________________________
consensus ACCAACCCGGAGATTCGAGGAATCCGACATTGATAATCTGCAGTATCTACAAGCTGTGGT
. : . : . : . : . : . :
rJMSF003O18+ TAAAGAAACACTGCGTCTCCATCCCCCAGCACCTTTCTTGATCCCAAGAAGAGCAATTCA
rJMSF009F22+ TAAAGAAACACTGCGTCTCCATCCCCCAGCACCTTTCTTGATCCCAAGAAGAGCAATTCA
rJMFF030J19+ TAAAGAAACACTGCGTCTCCATCCCCCAGCACCTTTCTTGATCCCAAGAAGAGCAATTCA
____________________________________________________________
consensus TAAAGAAACACTGCGTCTCCATCCCCCAGCACCTTTCTTGATCCCAAGAAGAGCAATTCA
. : . : . : . : . : . :
rJMSF003O18+ AGACACTAAATTTATGGGCTATGACATACCCAAAGACACTCAGGTCTTCATAAATGTCTG
rJMSF009F22+ AGACACTAAATTTATGGGCTATGACATACCCAAAGACACTCAGGTCTTCATAAATGTCTG
rJMFF030J19+ AGACACTAAATTTATGGGCTATGACATACCCAAAGACACTCAGGTCTTCATAAATGTCTG
____________________________________________________________
consensus AGACACTAAATTTATGGGCTATGACATACCCAAAGACACTCAGGTCTTCATAAATGTCTG
. : . : . : . : . : . :
rJMSF003O18+ GGCAATTGGCAGGGACCATGAAAGCTGGGAGGACCCTTTGTCTTTCAAGCCTGAGAGGTT
rJMSF009F22+ GGCAATTGGCAGGGACCATGAAAGCTGGGAGGACCCTTTGTCTTTCAAGCCTGAGAGGTT
rJMFF030J19+ GGCAATTGGCAGGGACCATGAAAGCTGGGAGGACCCTTTGTCTTTCAAGCCTGAGAGGTT
____________________________________________________________
consensus GGCAATTGGCAGGGACCATGAAAGCTGGGAGGACCCTTTGTCTTTCAAGCCTGAGAGGTT
. : . : . : . : . : . :
rJMSF003O18+ CCTGGGCTCCAACATAGACTTCAAGGGACAGAACTTTGAGTTTCTGCCGTTTGGTGCGGG
rJMSF009F22+ CCTGGGCTCCAACATAGACTTCAAGGGACAGAACTTTGAGTTTCTGCCGTTTGGTGCGGG
rJMFF030J19+ CCTGGGCTCCAACATAGACTTCAAGGGACAGAACTTTGAGTTTCTGCCGTTTGGTGCGGG
____________________________________________________________
consensus CCTGGGCTCCAACATAGACTTCAAGGGACAGAACTTTGAGTTTCTGCCGTTTGGTGCGGG
. : . : . : . : . : . :
rJMSF003O18+ CAGGAGAATGTGTGCAGGTCTGCCATTAGGTAACAGGATGCTGCATTTTGTTCTGGGATC
rJMSF009F22+ CAGGAGAATGTGTGCAGGTCTGCCATTAGGTAACAGGATGCTGCATTTTGTTCTGGGATC
rJMFF030J19+ CAGGAGAATGTGTGCAGGTCTGCCATTAGGTAACAGGATGCTGCATTTTGTTCTGGGATC
rJMFF047G12+ TGTGTGCAGGTCTGCCATTAGGTAACAGGATGCTGCATTTTGTTCTGGGATC
____________________________________________________________
consensus CAGGAGAATGTGTGCAGGTCTGCCATTAGGTAACAGGATGCTGCATTTTGTTCTGGGATC
. : . : . : . : . : . :
rJMSF003O18+ ATTGCTTCATACTTTTGACTGGGAACTTGAAGGCAATGTGAGCTCAGAATCTCTGGACAT
rJMSF009F22+ ATTGCTTCATACTTTTGACTGGGAACTTGAAGGCAATGTGAGCTCAGAATCTCTGGACAT
rJMFF030J19+ ATTGCTTCATACTTTTGACTGGGAACTTGAAGGCAATGTGAGCTCAGAATCTCTGGACAT
rJMFF047G12+ ATTGCTTCATACTTTTGACTGGGAACTTGAAGGCAATGTGAGCTCAGAATCTCTGGACAT
____________________________________________________________
consensus ATTGCTTCATACTTTTGACTGGGAACTTGAAGGCAATGTGAGCTCAGAATCTCTGGACAT
. : . : . : . : . : . :
rJMSF003O18+ GGCAGAAAGAATGGGAATCACAGTCAGAAAATTTGAACCTCTGAAAGCAATACCAAGGAG
rJMSF009F22+ GGCAGAAAGAATGGGAATCACAGTCAGAAAATTTGAACCTCTGAAAGCAATACCAAGGAG
rJMFF030J19+ GGCAGAAAGAATGGGAATCACAGTCAGAAAATTTGAACCTCTGAAAGCAATACCAAGGAG
rJMFF047G12+ GGCAGAAAGAATGGGAATCACAGTCAGAAAATTTGAACCTCTGAAAGCAATACCAAGGAG
____________________________________________________________
consensus GGCAGAAAGAATGGGAATCACAGTCAGAAAATTTGAACCTCTGAAAGCAATACCAAGGAG
. : . : . : . : . : . :
rJMSF003O18+ AGTTGTGGCTTGACAGAAGCTAGAATTCTACCT
rJMSF009F22+ AGTTGTGGCTTGACAGAAGCTAGAATTCTACCTTGTAATTATTCTATTTTAGTTTCCAAT
rJMFF030J19+ AGTTGTGGCTTGACAGAAGCTAGAATTCTACCTTGTAATTATTCTATTTTAGTTTCCAAT
rJMFF047G12+ AGTTGTGGCTTGACAGAAGCTAGAATTCTACCTTGTAATTATTCTATTTTAGTTTCCAAT
____________________________________________________________
consensus AGTTGTGGCTTGACAGAAGCTAGAATTCTACCTTGTAATTATTCTATTTTAGTTTCCAAT
. : . : . : . : . : . :
rJMSF009F22+ GAATAAGGTCAATAATGGACCATGTAAACTTCATCTGCTTGCA
rJMFF030J19+ GAATAAGGTCAATAATGGA-CATGTAAACTTCATCTGCTTGCAAATATGCTCATATATAT
rJMFF047G12+ GAATAAGGTCAATAATGGA-CATGTAAACTTCATCTGCTTGCAAATATGCTCATATATAT
____________________________________________________________
consensus GAATAAGGTCAATAATGGA-CATGTAAACTTCATCTGCTTGCAAATATGCTCATATATAT
. : . : . : . : . : . :
rJMFF030J19+ TACATTA
rJMFF047G12+ TACATTATGCCTCAATGCAATTATAATTCTAAGAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus TACATTATGCCTCAATGCAATTATAATTCTAAGAAAAAAAAAAAAAAAACTCTCCAGGGT