Contig 002691:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004I22Sequence734002691 (4)ref|XP_002513189.1|8e-83arginine/serine rich splicing factor sf4/14, putative [Ricinus communis] gb|EEF
JMFF045I23Sequence645006228 (2)ref|XP_009757640.1|6e-39PREDICTED: SURP and G-patch domain-containing protein 1-like protein [Nicotiana596002691 (4)ref|XP_002513189.1|6e-51arginine/serine rich splicing factor sf4/14, putative [Ricinus communis] gb|EEF
JMFN035J20Sequence446002691 (4)ref|XP_002513189.1|1e-67arginine/serine rich splicing factor sf4/14, putative [Ricinus communis] gb|EEF
JMFS115G06Sequence614002691 (4)gb|KJB22222.1|3e-84hypothetical protein B456_004G035900 [Gossypium raimondii] gb|KJB22223.1| hypoth

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS115G06-                        TCTCAAAGGTCATATCAGCAACGCTCGAATTATCAAATTCCAGCATC
                      ____________________________________________________________
consensus                          TCTCAAAGGTCATATCAGCAACGCTCGAATTATCAAATTCCAGCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS115G06-           AGCTTTGTATGGTACAGCAGATGCTTCTAGAGAGGATGCATATACTGGAAGATATGGTGA
                      ____________________________________________________________
consensus             AGCTTTGTATGGTACAGCAGATGCTTCTAGAGAGGATGCATATACTGGAAGATATGGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035J20-                                                                   AGGC
JMFS115G06-           ACCTAATCCTCCAACAGCAGCAGATCCAATAGCAATGATGGAGTTTTACATGAAGAAGGC
rJMFF004I22+                    CCAACAGCAGCAGATCCAATAGTAATGATGGAGTTTTACATGAAGAAGGC
                      ____________________________________________________________
consensus             ACCTAATCCTCCAACAGCAGCAGATCCAATAGTAATGATGGAGTTTTACATGAAGAAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035J20-           TGCACAAGAAGAGAAATTGAGGCCCCTAAAGTCATCAAAGGATGAGATGCCTCCACCCCC
JMFS115G06-           TGCACAAGAAGAGAAATTGAGGCCCCTAAAGTCATCAAAGGATGAGATGCCTCCACCCCC
rJMFF004I22+          TGCACAAGAAGAGAAATTGAGGCCCCTAAAGTCATCAAAGGATGAGATGCCTCCACCCCC
                      ____________________________________________________________
consensus             TGCACAAGAAGAGAAATTGAGGCCCCTAAAGTCATCAAAGGATGAGATGCCTCCACCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035J20-           TTCCCTTCAAGTTGCTGCTTCTTCTGGCAAGAAAGGGCATCATATGGGAGACTATATCCC
JMFS115G06-           TTCCCTTCAAGTTGCTGCTTCTTCTGGCAAGAAAGGGCATCATATGGGAGACTATATCCC
rJMFF004I22+          TTCCCTTCAAGTTGCTGCTTCTTCTGGCAAGAAAGGGCATCATATGGGAGACTATATCCC
                      ____________________________________________________________
consensus             TTCCCTTCAAGTTGCTGCTTCTTCTGGCAAGAAAGGGCATCATATGGGAGACTATATCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035J20-           ACCCGAAGAGCTTGCAAAGTTCATGGCTAACTGCAATGATGCTGCTGCGCAGAAAGCAAC
JMFS115G06-           ACCCGAAGAGCTTGCAAAGTTCATGGCTAACTGCAATGATGCTGCTGCGCAGAAAGCAAC
rJMFF004I22+          ACCCGAAGAGCTTGCAAAGTTCATGGCTAACTGCAATGATGCTGCTGCGCAGAAAGCAAC
rJMFF045I23+              GAAGAGCTTGCAAAGTTCATGGCTAACTGCAATGATGCTGCTGCGCAGAAAGCAAC
                      ____________________________________________________________
consensus             ACCCGAAGAGCTTGCAAAGTTCATGGCTAACTGCAATGATGCTGCTGCGCAGAAAGCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035J20-           CAAGGAGATTGCTGAGAGGAACAAAATTCAGGCCAATAATATCGGTCACAAACTGTTATC
JMFS115G06-           CAAGGAGATTGCTGAGAGGAACAAAATTCAGGCCAATAATATCGGTCACAAACTGTTATC
rJMFF004I22+          CAAGGAGATTGCTGAGAGGAACAAAATTCAGGCCAATAATATCGGTCACAAACTGTTATC
rJMFF045I23+          CAAGGAGATTGCTGAGAGGAACAAAATTCAGGCCAATAATATCGGTCACAAACTGTTATC
                      ____________________________________________________________
consensus             CAAGGAGATTGCTGAGAGGAACAAAATTCAGGCCAATAATATCGGTCACAAACTGTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035J20-           AAAAATGGGATGGAGAGAAGGTGAAGGTCTGGGCAGCTCTAGAAGCGGTATTGCTGATCC
JMFS115G06-           AAAAATGGGATGGAGAGAAGGTGAAGGTCTGGGAAGCTCTAGAAGCGGTATTGCTGATCC
rJMFF004I22+          AAAAATGGGATGGAGAGAAGGTGAAGGTCTGGGAAGCTCTAGAAGCGGTATTGCTGATCC
rJMFF045I23+          AAAAATGGGATGGAGAGAAGGTGAAGGTCTGGGAAGCTCTAGAAGCGGTATTGCTGATCC
                      ____________________________________________________________
consensus             AAAAATGGGATGGAGAGAAGGTGAAGGTCTGGGAAGCTCTAGAAGCGGTATTGCTGATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035J20-           AATTACAGCAGGTGAAGTAAAGTCAAACAACCTCGGGGTTGGTGCTCATAATCCCGGGGA
JMFS115G06-           AATTACAGCAGGTGAAGTAAAGTCAAACAACCTCGGGGTTGGTGCTCATAATCCCGGGGA
rJMFF004I22+          AATTACAGCAGGTGAAGTAAAGTCAAACAACCTCGGGGTTGGTGCTCATAATCCCGGGGA
rJMFF045I23+          AATTACAGCAGGTGAAGTAAAGTCAAACAACCTCGGGGTTGGTGCTCATAATCCCGGGGA
                      ____________________________________________________________
consensus             AATTACAGCAGGTGAAGTAAAGTCAAACAACCTCGGGGTTGGTGCTCATAATCCCGGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035J20-           GGTCACTCCAGAAGACGATATCTATGAGCAGTACAAGAAGCGGATGATGCTGGGCTATCC
JMFS115G06-           GGTCACTCCAGAAGACGATATCTATGAGCAGTACAAGAAGCGGATGATGCTGGGCTATCG
rJMFF004I22+          GGTCACTCCAGAAGACGATATCTATGAGCAGTACAAGAAGCGGATGATGCTGGGCTATCG
rJMFF045I23+          GGTCACTCCAGAAGACGATATCTATGAGCAGTACAAGAAGCGGATGATGCTGGGCTATCG
                      ____________________________________________________________
consensus             GGTCACTCCAGAAGACGATATCTATGAGCAGTACAAGAAGCGGATGATGCTGGGCTATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035J20-           ATACAGGCCAAATCCTTTGAAC                                      
JMFS115G06-           ATACAGGCCAAATCCTTTGAAC                                      
rJMFF004I22+          ATACAGGCCAAATCCTTTGAACAATCCTCGGAAATCGTATTACTGAGACGATTTCTTGAT
rJMFF045I23+          ATACAGGCCAAATCCTTTGAACAATCCTCGGAAATCGTATTACTGAGACGATTTCTTGAT
                      ____________________________________________________________
consensus             ATACAGGCCAAATCCTTTGAACAATCCTCGGAAATCGTATTACTGAGACGATTTCTTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I22+          CTCTCCAATCGTATCTGCCATGGAATGCTGTAATAACACCTCTGCATCAAAGCACCCCAG
rJMFF045I23+          CTCTCCAATCGTATCTGCCATGGAATGCTGTAATAACACCTCTGCATCAAAGCACCCCAG
                      ____________________________________________________________
consensus             CTCTCCAATCGTATCTGCCATGGAATGCTGTAATAACACCTCTGCATCAAAGCACCCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I22+          CTCTCGGTCTATATTGTTTTTCAGGAAAAGAATCCACTTTTAAAGTTTGTGTCCTTACAG
rJMFF045I23+          CTCTCGGTCTATATTGTTTTTCAGGAAAAGAATCCACTTTTAAAGTTTGTGTCCTTACAG
                      ____________________________________________________________
consensus             CTCTCGGTCTATATTGTTTTTCAGGAAAAGAATCCACTTTTAAAGTTTGTGTCCTTACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I22+          ATTGAATGACTTCCCTGCAAATTTGTATTAAGTGTTGAAATTAAACTTGCTTGCTTATTT
rJMFF045I23+          ATTGAATGACTTCCCTGCAAATTTGTATTAAGTGTTGAAATTAAACTTGCTTGCTTATTT
                      ____________________________________________________________
consensus             ATTGAATGACTTCCCTGCAAATTTGTATTAAGTGTTGAAATTAAACTTGCTTGCTTATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF004I22+          ATCATAATGGCCCATCTCCAGGTC                                    
rJMFF045I23+          ATCATAATGGCCCATCTCCAGGTCATCTTCTTAATGAATGTCTTATCTCATTCCTTGCCC
                      ____________________________________________________________
consensus             ATCATAATGGCCCATCTCCAGGTCATCTTCTTAATGAATGTCTTATCTCATTCCTTGCCC