Contig 002682:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031A20Sequence582012957 (7)dbj|BAF64713.1|9e-10070 kDa subunit of replication protein A [Ipomoea nil]736002682 (7)dbj|BAF64713.1|3e-15470 kDa subunit of replication protein A [Ipomoea nil]
JMFF033K02Sequence580012957 (7)dbj|BAF64713.1|7e-9970 kDa subunit of replication protein A [Ipomoea nil]783002682 (7)dbj|BAF64713.1|7e-17170 kDa subunit of replication protein A [Ipomoea nil]
JMFF043I21Sequence644012957 (7)dbj|BAF64713.1|5e-10770 kDa subunit of replication protein A [Ipomoea nil]533002682 (7)dbj|BAF64713.1|2e-8170 kDa subunit of replication protein A [Ipomoea nil]
JMFF043J01Sequence632012957 (7)dbj|BAF64713.1|2e-11170 kDa subunit of replication protein A [Ipomoea nil]603002682 (7)dbj|BAF64713.1|3e-12570 kDa subunit of replication protein A [Ipomoea nil]
JMFF044A15Sequence629012957 (7)dbj|BAF64713.1|1e-10470 kDa subunit of replication protein A [Ipomoea nil]533002682 (7)dbj|BAF64713.1|2e-8170 kDa subunit of replication protein A [Ipomoea nil]
JMSF020A13Sequence676012957 (7)dbj|BAF64713.1|4e-12470 kDa subunit of replication protein A [Ipomoea nil]761002682 (7)dbj|BAF64713.1|5e-16170 kDa subunit of replication protein A [Ipomoea nil]
JMSF041F22Sequence788012957 (7)dbj|BAF64713.1|1e-15470 kDa subunit of replication protein A [Ipomoea nil]662002682 (7)dbj|BAF64713.1|2e-13470 kDa subunit of replication protein A [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020A13+ CCAGTAGTTGCAA
rJMFF033K02+ CCAGTAGTTGCAA
                      ____________________________________________________________
consensus CCAGTAGTTGCAA
 
. : . : . : . : . : . :
rJMSF020A13+ TCAGATCAGTTAAAGTTGGAGATTTCCCAAGGTTTATCTTTATCTGCAATTACTAGAAGT
rJMFF033K02+ TCAGATCAGTTAAAGTTGGAGATTT-CCAAGGTTTATCTTTATCTGCAATTACTAGAAGT
rJMFF031A20+ TACTAGAAGT
                      ____________________________________________________________
consensus TCAGATCAGTTAAAGTTGGAGATTTCCCAAGGTTTATCTTTATCTGCAATTACTAGAAGT
 
. : . : . : . : . : . :
rJMSF020A13+ ACTGTACTGGTGAACCCGGATATGCCTGAAGCCAAGAAATTGAGATCTTGGTATGATTGT
rJMFF033K02+ ACTGTACTGGTGAACCCGGATATGCCTGAAGCCAAGAAATTGAGATCTTGGTATGATTGT
rJMFF031A20+ ACTGTACTGGTGANCCCGGATATGCCTGAAGCCAAGAAATTGAGATCTTGGTATGATTGT
                      ____________________________________________________________
consensus ACTGTACTGGTGAACCCGGATATGCCTGAAGCCAAGAAATTGAGATCTTGGTATGATTGT
 
. : . : . : . : . : . :
rJMSF020A13+ GAAGGGAAAGAAACCTCATTGACTTCGGTT-GGCTCTGGTTTGAGCTCCTCTGCCAAAGG
rJMSF041F22+ AAAGAAACCTCATTGACTTCGGTTNGGCTCTGGTTTGAGCTCCTCTGCCAAAGG
rJMFF033K02+ GAAGGGAAAGAAACCTCATTGACTTCGGTT-GGCTCTGGTTTGAGCTCCTCTGCCAAAGG
rJMFF031A20+ GAAGGGAAAGAAACCTCATTGACTTCGGTT-GGCTCTGGTTTGAGCTCCTCTGCCAAAGG
                      ____________________________________________________________
consensus GAAGGGAAAGAAACCTCATTGACTTCGGTT-GGCTCTGGTTTGAGCTCCTCTGCCAAAGG
 
. : . : . : . : . : . :
rJMSF020A13+ CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
rJMSF041F22+ CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
rJMFF033K02+ CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
rJMFF031A20+ CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
rJMFF043J01+ GATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
                      ____________________________________________________________
consensus CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
 
. : . : . : . : . : . :
rJMSF020A13+ CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
rJMSF041F22+ CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
rJMFF033K02+ CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
rJMFF031A20+ CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
rJMFF043J01+ CCTGGGTGAGGACAAGCCTGTGTTNTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
                      ____________________________________________________________
consensus CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
 
. : . : . : . : . : . :
rJMSF020A13+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
rJMSF041F22+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
rJMFF033K02+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
rJMFF031A20+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
rJMFF043J01+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
                      ____________________________________________________________
consensus TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
 
. : . : . : . : . : . :
rJMSF020A13+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMSF041F22+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF033K02+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF031A20+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF043J01+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF043I21+ GGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF044A15+ GGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
                      ____________________________________________________________
consensus TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
 
. : . : . : . : . : . :
rJMSF020A13+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMSF041F22+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF033K02+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF031A20+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF043J01+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF043I21+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF044A15+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
                      ____________________________________________________________
consensus TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
 
. : . : . : . : . : . :
rJMSF020A13+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMSF041F22+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF033K02+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF031A20+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF043J01+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF043I21+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF044A15+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
                      ____________________________________________________________
consensus ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
 
. : . : . : . : . : . :
rJMSF020A13+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMSF041F22+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF033K02+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF031A20+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF043J01+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF043I21+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF044A15+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
                      ____________________________________________________________
consensus TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
 
. : . : . : . : . : . :
rJMSF020A13+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMSF041F22+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF033K02+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF031A20+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF043J01+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF043I21+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF044A15+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
                      ____________________________________________________________
consensus CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
 
. : . : . : . : . : . :
rJMSF020A13+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMSF041F22+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF033K02+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF031A20+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF043J01+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF043I21+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF044A15+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
                      ____________________________________________________________
consensus AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
 
. : . : . : . : . : . :
rJMSF020A13+ GATGAACATCTGTGTATAAC
rJMSF041F22+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATT
rJMFF033K02+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATT
rJMFF031A20+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
rJMFF043J01+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
rJMFF043I21+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
rJMFF044A15+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
                      ____________________________________________________________
consensus GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
 
. : . : . : . : . : . :
rJMFF031A20+ CTAAATC
rJMFF043J01+ CTAAATCTAGATTATTGGTTCCTTT
rJMFF043I21+ CTAAATCTAGATTATTGGTTCCTTTGCTGATCAGATCTGTTAGATTTGCATTTTGCAGTC
rJMFF044A15+ CTAAATCTAGATTATTGGTTCCTTTGCTGATCAGATCTGTTAGATTTGCATTTTGCAGTC
                      ____________________________________________________________
consensus CTAAATCTAGATTATTGGTTCCTTTGCTGATCAGATCTGTTAGATTTGCATTTTGCAGTC
 
. : . : . : . : . : . :
rJMFF043I21+ CAATCCTATTCCTATCCATTAAACAATGCTAAATAAAACTGGAAAAAAGGCAGATTCTTT
rJMFF044A15+ CAATCCTATTCCTATCCATTAAACAATGCTAAATAAAACTGGAAAAAAGGCAGATTCTTT
                      ____________________________________________________________
consensus CAATCCTATTCCTATCCATTAAACAATGCTAAATAAAACTGGAAAAAAGGCAGATTCTTT