| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031A20 | Sequence | 582 | 012957 (7) | dbj|BAF64713.1| | 9e-100 | 70 kDa subunit of replication protein A [Ipomoea nil] | 736 | 002682 (7) | dbj|BAF64713.1| | 3e-154 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMFF033K02 | Sequence | 580 | 012957 (7) | dbj|BAF64713.1| | 7e-99 | 70 kDa subunit of replication protein A [Ipomoea nil] | 783 | 002682 (7) | dbj|BAF64713.1| | 7e-171 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMFF043I21 | Sequence | 644 | 012957 (7) | dbj|BAF64713.1| | 5e-107 | 70 kDa subunit of replication protein A [Ipomoea nil] | 533 | 002682 (7) | dbj|BAF64713.1| | 2e-81 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMFF043J01 | Sequence | 632 | 012957 (7) | dbj|BAF64713.1| | 2e-111 | 70 kDa subunit of replication protein A [Ipomoea nil] | 603 | 002682 (7) | dbj|BAF64713.1| | 3e-125 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMFF044A15 | Sequence | 629 | 012957 (7) | dbj|BAF64713.1| | 1e-104 | 70 kDa subunit of replication protein A [Ipomoea nil] | 533 | 002682 (7) | dbj|BAF64713.1| | 2e-81 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMSF020A13 | Sequence | 676 | 012957 (7) | dbj|BAF64713.1| | 4e-124 | 70 kDa subunit of replication protein A [Ipomoea nil] | 761 | 002682 (7) | dbj|BAF64713.1| | 5e-161 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMSF041F22 | Sequence | 788 | 012957 (7) | dbj|BAF64713.1| | 1e-154 | 70 kDa subunit of replication protein A [Ipomoea nil] | 662 | 002682 (7) | dbj|BAF64713.1| | 2e-134 | 70 kDa subunit of replication protein A [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
rJMSF020A13+ CCAGTAGTTGCAA
rJMFF033K02+ CCAGTAGTTGCAA
____________________________________________________________
consensus CCAGTAGTTGCAA
. : . : . : . : . : . :
rJMSF020A13+ TCAGATCAGTTAAAGTTGGAGATTTCCCAAGGTTTATCTTTATCTGCAATTACTAGAAGT
rJMFF033K02+ TCAGATCAGTTAAAGTTGGAGATTT-CCAAGGTTTATCTTTATCTGCAATTACTAGAAGT
rJMFF031A20+ TACTAGAAGT
____________________________________________________________
consensus TCAGATCAGTTAAAGTTGGAGATTTCCCAAGGTTTATCTTTATCTGCAATTACTAGAAGT
. : . : . : . : . : . :
rJMSF020A13+ ACTGTACTGGTGAACCCGGATATGCCTGAAGCCAAGAAATTGAGATCTTGGTATGATTGT
rJMFF033K02+ ACTGTACTGGTGAACCCGGATATGCCTGAAGCCAAGAAATTGAGATCTTGGTATGATTGT
rJMFF031A20+ ACTGTACTGGTGANCCCGGATATGCCTGAAGCCAAGAAATTGAGATCTTGGTATGATTGT
____________________________________________________________
consensus ACTGTACTGGTGAACCCGGATATGCCTGAAGCCAAGAAATTGAGATCTTGGTATGATTGT
. : . : . : . : . : . :
rJMSF020A13+ GAAGGGAAAGAAACCTCATTGACTTCGGTT-GGCTCTGGTTTGAGCTCCTCTGCCAAAGG
rJMSF041F22+ AAAGAAACCTCATTGACTTCGGTTNGGCTCTGGTTTGAGCTCCTCTGCCAAAGG
rJMFF033K02+ GAAGGGAAAGAAACCTCATTGACTTCGGTT-GGCTCTGGTTTGAGCTCCTCTGCCAAAGG
rJMFF031A20+ GAAGGGAAAGAAACCTCATTGACTTCGGTT-GGCTCTGGTTTGAGCTCCTCTGCCAAAGG
____________________________________________________________
consensus GAAGGGAAAGAAACCTCATTGACTTCGGTT-GGCTCTGGTTTGAGCTCCTCTGCCAAAGG
. : . : . : . : . : . :
rJMSF020A13+ CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
rJMSF041F22+ CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
rJMFF033K02+ CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
rJMFF031A20+ CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
rJMFF043J01+ GATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
____________________________________________________________
consensus CGTATTGTGGTCCATGTACTCGGATAGAGTATCCCTACTTCATATAACCAGTAACCCAAA
. : . : . : . : . : . :
rJMSF020A13+ CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
rJMSF041F22+ CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
rJMFF033K02+ CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
rJMFF031A20+ CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
rJMFF043J01+ CCTGGGTGAGGACAAGCCTGTGTTNTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
____________________________________________________________
consensus CCTGGGTGAGGACAAGCCTGTGTTTTTCAGTATAAAGGCAAATATTAGCTTCATTAAACC
. : . : . : . : . : . :
rJMSF020A13+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
rJMSF041F22+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
rJMFF033K02+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
rJMFF031A20+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
rJMFF043J01+ TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
____________________________________________________________
consensus TGAACAAGCGATGTGGTATAGAGCGTGTAAAACGTGTAACAAGAAAGTGACTGAGGCCAT
. : . : . : . : . : . :
rJMSF020A13+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMSF041F22+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF033K02+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF031A20+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF043J01+ TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF043I21+ GGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
rJMFF044A15+ GGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
____________________________________________________________
consensus TGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAGAATGACACAGATTGTAGCTTGAGATA
. : . : . : . : . : . :
rJMSF020A13+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMSF041F22+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF033K02+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF031A20+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF043J01+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF043I21+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
rJMFF044A15+ TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
____________________________________________________________
consensus TATAGTTGCCATGAGGGTGTCTGATACAAGTGGCGAGGCTTGGCTCTCTGTCTTCAATGA
. : . : . : . : . : . :
rJMSF020A13+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMSF041F22+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF033K02+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF031A20+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF043J01+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF043I21+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
rJMFF044A15+ ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
____________________________________________________________
consensus ACAAGCAGAAAAAATAATTGGATGCTCTGCAGATGAGCTTGACAGGCTGAGATCTCAGGA
. : . : . : . : . : . :
rJMSF020A13+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMSF041F22+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF033K02+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF031A20+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF043J01+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF043I21+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
rJMFF044A15+ TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
____________________________________________________________
consensus TGGAGATAGTAGTGCTTACCAAATGAAATTGAAGGAAGCAACATGGGTTCCTTATCTTTT
. : . : . : . : . : . :
rJMSF020A13+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMSF041F22+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF033K02+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF031A20+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF043J01+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF043I21+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
rJMFF044A15+ CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
____________________________________________________________
consensus CCGGGTCAGCGTTACCCCTCAAGAGTACAATAACGAAAAGAGGCAAAGGATAACAGTCAG
. : . : . : . : . : . :
rJMSF020A13+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMSF041F22+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF033K02+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF031A20+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF043J01+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF043I21+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
rJMFF044A15+ AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
____________________________________________________________
consensus AGCGGCGGCTCCAGTTGATTTTGCAGCTGAATCCAGATACTTTCTGGAAGAAATGGCTAA
. : . : . : . : . : . :
rJMSF020A13+ GATGAACATCTGTGTATAAC
rJMSF041F22+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATT
rJMFF033K02+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATT
rJMFF031A20+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
rJMFF043J01+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
rJMFF043I21+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
rJMFF044A15+ GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
____________________________________________________________
consensus GATGAACATCTGTGTATAACTGGCTTTTGTAAATTAAAACAATCAGAGTATTTTCTTTCA
. : . : . : . : . : . :
rJMFF031A20+ CTAAATC
rJMFF043J01+ CTAAATCTAGATTATTGGTTCCTTT
rJMFF043I21+ CTAAATCTAGATTATTGGTTCCTTTGCTGATCAGATCTGTTAGATTTGCATTTTGCAGTC
rJMFF044A15+ CTAAATCTAGATTATTGGTTCCTTTGCTGATCAGATCTGTTAGATTTGCATTTTGCAGTC
____________________________________________________________
consensus CTAAATCTAGATTATTGGTTCCTTTGCTGATCAGATCTGTTAGATTTGCATTTTGCAGTC
. : . : . : . : . : . :
rJMFF043I21+ CAATCCTATTCCTATCCATTAAACAATGCTAAATAAAACTGGAAAAAAGGCAGATTCTTT
rJMFF044A15+ CAATCCTATTCCTATCCATTAAACAATGCTAAATAAAACTGGAAAAAAGGCAGATTCTTT
____________________________________________________________
consensus CAATCCTATTCCTATCCATTAAACAATGCTAAATAAAACTGGAAAAAAGGCAGATTCTTT