Contig 002680:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003C09Sequence420011617 (4)dbj|BAM78523.1|2e-07SUPPRESSOR OF GENE SILENCING 3 [Nicotiana tabacum]764002680 (2)emb|CDP14587.1|1e-50unnamed protein product [Coffea canephora]
JMFF043O16Sequence672011617 (4)ref|XP_007048634.1|4e-08XS domain-containing protein / XS zinc finger domain-containing protein-related508002680 (2)ref|XP_009773184.1|9e-05PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Nicotiana sylvestris] r

Alignment

This contig is upended


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rJMFF003C09+                GGCTGAGCGCNTCAGCAAGCATTTTACTGACAATGGAAGAGACAGGGAAGCNTG
                      ____________________________________________________________
consensus                   GGCTGAGCGCNTCAGCAAGCATTTTACTGACAATGGAAGAGACAGGGAAGCNTG
 
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rJMFF003C09+          GCAACGCAACAATATGATATTTTATCAGGGTGGAAAGCGCCAGCTGTTTGGTTACATGGC
                      ____________________________________________________________
consensus             GCAACGCAACAATATGATATTTTATCAGGGTGGAAAGCGCCAGCTGTTTGGTTACATGGC
 
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rJMFF003C09+          CACAAAGAAAGATCTAGACGTATTTAACCAGCATTCACAGGGTAAATCAAAACTGAAGTA
                      ____________________________________________________________
consensus             CACAAAGAAAGATCTAGACGTATTTAACCAGCATTCACAGGGTAAATCAAAACTGAAGTA
 
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rJMFF003C09+          TGAGATTAGATCTCATCTAGAGACGGTGGTCAATTCAATGAAGCAGATGAATGAGGATAA
                      ____________________________________________________________
consensus             TGAGATTAGATCTCATCTAGAGACGGTGGTCAATTCAATGAAGCAGATGAATGAGGATAA
 
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rJMFF003C09+          TCAACAGCTAATCTGGTACAAGAACAACGCACAAAAGCACCAGAAAATTGCAAAGGCTGT
rJMFF043O16+                                          AAAAGCACCAGAAAATTGCAAAGGCTGT
                      ____________________________________________________________
consensus             TCAACAGCTAATCTGGTACAAGAACAACGCACAAAAGCACCAGAAAATTGCAAAGGCTGT
 
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rJMFF003C09+          TAAGGAATCTTTTATTGTGATGGGTGAGAAGTACCGCCAATCTGCAGAAGAAACAAAAAT
rJMFF043O16+          TAAGGAATCTTTTATTGTGATGGGTGAGAAGTACCGCCAATTTGCAGAAGAAACAAAAAT
                      ____________________________________________________________
consensus             TAAGGAATCTTTTATTGTGATGGGTGAGAAGTACCGCCAATTTGCAGAAGAAACAAAAAT
 
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rJMFF003C09+          TGTTCGTTCAAAAACGAAAGATCACCATGTGCAGAAAGAGGAGGAGATTGAGTATTTGGA
rJMFF043O16+          TGTTTGTTCAAAAACGAAAGATCCCCATGTGCAGAAAGAGGAGGAGATTGAGTATTTGGA
                      ____________________________________________________________
consensus             TGTTTGTTCAAAAACGAAAGATCCCCATGTGCAGAAAGAGGAGGAGATTGAGTATTTGGA
 
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rJMFF003C09+          ACATTTAGTTCAGCAAAAGATCCAAAGCATATTGGAAGTCAAGGACCAGTCAGCTGTTGA
rJMFF043O16+          ACATTTAGTTCAGCAAAAGTTCCAAAGCATATTGGAAGTCAAGGACCAGTCAGCTGTTGA
                      ____________________________________________________________
consensus             ACATTTAGTTCAGCAAAAGTTCCAAAGCATATTGGAAGTCAAGGACCAGTCAGCTGTTGA
 
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rJMFF003C09+          TAATCAAAGGTTTAGGGCCGAGGTGGGAAAATATTTTGAGTCATTGGAGCTGGAAAAGGT
rJMFF043O16+          TTATCAAAGGTTTAGGGCCGAGGTGGGAAAATATTTTGAGTCATTGGAGCTGGAAAAGGT
                      ____________________________________________________________
consensus             TTATCAAAGGTTTAGGGCCGAGGTGGGAAAATATTTTGAGTCATTGGAGCTGGAAAAGGT
 
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rJMFF003C09+          GGAACCCATGGAACGCAAGCAACTGCTGATAAAAGCCCACGGTGAATGGGTTAATAAGAT
rJMFF043O16+          GGAACCCATGGAACGCAAGCAACTGCTGATAAAAGCCCCCGGTGAATGGGTTAATAAGAT
                      ____________________________________________________________
consensus             GGAACCCATGGAACGCAAGCAACTGCTGATAAAAGCCCCCGGTGAATGGGTTAATAAGAT
 
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rJMFF003C09+          GAAACAGAGACACCGTGCAGAAGAGGCTGCGGTGGAGGAGGAATTTAATGCTGCATTAAC
rJMFF043O16+          GAAACAGAGACCCCGTGCAGAAGAGGCTGCGGTGGAGGAGGAATTTAATGCTGCATTAAC
                      ____________________________________________________________
consensus             GAAACAGAGACCCCGTGCAGAAGAGGCTGCGGTGGAGGAGGAATTTAATGCTGCATTAAC
 
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rJMFF003C09+          TAGGTTGCTTGAGATTTGAGAGGAGAGATTTGTAACTAGTTTATACTCTGCAGTTAATAG
rJMFF043O16+          TAGGTTGCTTGAGATTTGAGAGGAGAGATTTGTAACTAGTTTATACTTTGCAGTTAATAG
                      ____________________________________________________________
consensus             TAGGTTGCTTGAGATTTGAGAGGAGAGATTTGTAACTAGTTTATACTTTGCAGTTAATAG
 
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rJMFF003C09+          TTTTGGAACTCCAGAAAATTTTCGTGGAAGTTGAACTATTATATGCTTAT          
rJMFF043O16+          TTTTGGAACTCCAGAAAATTTTTGTGGAAGTTGAACTATTATATGCTTATGTTATCCGTG
                      ____________________________________________________________
consensus             TTTTGGAACTCCAGAAAATTTTTGTGGAAGTTGAACTATTATATGCTTATGTTATCCGTG