| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015C13 | Sequence | 614 | 003508 (9) | gb|EPS73081.1| | 3e-62 | hypothetical protein M569_01675, partial [Genlisea aurea] | 668 | 002679 (3) | ref|XP_009619283.1| | 1e-40 | PREDICTED: CSC1-like protein RXW8 [Nicotiana tomentosiformis] |
| JMFF024F01 | Sequence | 456 | 003508 (9) | ref|XP_009609764.1| | 1e-37 | PREDICTED: CSC1-like protein RXW8 [Nicotiana tomentosiformis] | 728 | 002679 (3) | ref|XP_009619283.1| | 4e-59 | PREDICTED: CSC1-like protein RXW8 [Nicotiana tomentosiformis] |
| JMFF043O04 | Sequence | 628 | 003508 (9) | gb|EYU26139.1| | 4e-63 | hypothetical protein MIMGU_mgv1a022719mg, partial [Erythranthe guttata] | 580 | 002679 (3) | ref|XP_009619283.1| | 2e-25 | PREDICTED: CSC1-like protein RXW8 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF024F01+ CGTTTACTTTGCCCTTGCTTACATTATATACCGCAATCAGA
____________________________________________________________
consensus CGTTTACTTTGCCCTTGCTTACATTATATACCGCAATCAGA
. : . : . : . : . : . :
rJMFF024F01+ TTCTCAACGTATATGTTACAAAGTACCAGACCGGGGGTCTTTATTGGATCATTGTGCACA
rJMFF015C13+ ATTGGATCATTGTGCACA
____________________________________________________________
consensus TTCTCAACGTATATGTTACAAAGTACCAGACCGGGGGTCTTTATTGGATCATTGTGCACA
. : . : . : . : . : . :
rJMFF024F01+ AGGCAACCATCTTCTCATTGGTGCTCACACAGATCATAGCTTTGGGAGTGTTTGGGCTCA
rJMFF015C13+ AGGCAACCATNTTTTCATTGGTGCTCACACAGATCATAGCTTTGGGAGTGTTTGGGCTCA
____________________________________________________________
consensus AGGCAACCATCTTTTCATTGGTGCTCACACAGATCATAGCTTTGGGAGTGTTTGGGCTCA
. : . : . : . : . : . :
rJMFF024F01+ AAAAATCCACTGTGGCATCGGGATTCACGTTTCCTTTGATAATCTGCACACTCCTTTTCA
rJMFF015C13+ AAAAATCCACTGTGGCATCGGGATTCACGTTTCCTTTGATAATCTGCACACTCCTTTTCA
rJMFF043O04+ GGATTCACGTTTCCTTTGATAATCTGCACACTCCTTTTCA
____________________________________________________________
consensus AAAAATCCACTGTGGCATCGGGATTCACGTTTCCTTTGATAATCTGCACACTCCTTTTCA
. : . : . : . : . : . :
rJMFF024F01+ ACGAGTATTGCAGGCAAAGATTTCATCCGGTATTAAGAAACCTCCCTGCACAGATCCTGG
rJMFF015C13+ ACGAGTATTGCAGGCAAAGATTTCATCCGGTATTAAGAAACCTCCCTGCACAGATCCTGG
rJMFF043O04+ ACGAGTATTGCAGGCAAAGATTTCATCCGGTATTAAGAAACCTCCCTGCACAGATCCTGG
____________________________________________________________
consensus ACGAGTATTGCAGGCAAAGATTTCATCCGGTATTAAGAAACCTCCCTGCACAGATCCTGG
. : . : . : . : . : . :
rJMFF024F01+ TTGACATGGATAGGAAGGATGAGCAGGAAGAGCGGATGAAAGATATCTACCAAAAGGTGA
rJMFF015C13+ TTGACATGGATAGGAAGGATGAGCAGGAAGAGCGGATGAAAGATATCTACCAAAAGGTGA
rJMFF043O04+ TTGACATGGATAGGAAGGATGAGCAGGAAGAGCGGATGAAAGATATCTACCAAAAGGTGA
____________________________________________________________
consensus TTGACATGGATAGGAAGGATGAGCAGGAAGAGCGGATGAAAGATATCTACCAAAAGGTGA
. : . : . : . : . : . :
rJMFF024F01+ CGTCGGCTTATTGTCAGTTCAGAAGAAGTTCAGTCACTCTAGGTAGCCCTCATCCCTTGA
rJMFF015C13+ CGTCGGCTTATTGTCAGTTCAGAAGAAGTTCAGTCACTCTAGGTAGCCCTCATCCCTTGA
rJMFF043O04+ CGTCGGCTTATTGTCAGTTCAGAAGAAGTTCAGTCACTCTAGGTAGCCCTCATCCCTTGA
____________________________________________________________
consensus CGTCGGCTTATTGTCAGTTCAGAAGAAGTTCAGTCACTCTAGGTAGCCCTCATCCCTTGA
. : . : . : . : . : . :
rJMFF024F01+ ATCCCAAGGAACAAAGCATGCTTCAAGAACTAGAAGACGACGTGAATCCAGCCGCTTTGA
rJMFF015C13+ ATCCCAAGGAACAAAGCATGCTTCAAGAACTAGAAGACGACGTGAATCCAGCCGCTTTGA
rJMFF043O04+ ATCCCAAGGAACAAAGCATGCTTCAAGAACTAGAAGACGACGTGAATCCAGCCGCTTTGA
____________________________________________________________
consensus ATCCCAAGGAACAAAGCATGCTTCAAGAACTAGAAGACGACGTGAATCCAGCCGCTTTGA
. : . : . : . : . : . :
rJMFF024F01+ AACCCGACATGCCTGCAGGATCATGGAATGGCCACACAAACTTAGAGATTGAAGAGGTGG
rJMFF015C13+ AACCCGACATGCCTGCAGGATCATGGAATGGCCACACAAACTTAGAGATTGAAGAGGTGG
rJMFF043O04+ AACCCGACATGCCTGCAGGATCATGGAATGGCCACACAAACTTAGAGATTGAAGAGGTGG
____________________________________________________________
consensus AACCCGACATGCCTGCAGGATCATGGAATGGCCACACAAACTTAGAGATTGAAGAGGTGG
. : . : . : . : . : . :
rJMFF024F01+ GCAAGTAATAGCGAGCGAGCTCAGATCAGAAAGTGCATGCATGGAAAGAGAAGAGGCAGA
rJMFF015C13+ GCAAGTAATAGCGAGCGAGCTCAGATCAGAAAGTGCATGCATGGAAAGAGAAGAGGCAGA
rJMFF043O04+ GCAAGTAATAGCGAGCGAGCTCAGATCAGAAAGTGCATGCATGGAAAGAGAAGAGGCAGA
____________________________________________________________
consensus GCAAGTAATAGCGAGCGAGCTCAGATCAGAAAGTGCATGCATGGAAAGAGAAGAGGCAGA
. : . : . : . : . : . :
rJMFF024F01+ CAGATAGCTACACAAATTTATTGTGAAAATGTAACAGTACAGTACATTGTTGTTCTCAAG
rJMFF015C13+ CAGATAGCTACACAAATTTATTGTGAAAATGTAACAGTACAGTACATTGTTGTTCTCAAG
rJMFF043O04+ CAGATAGCTACACAAATTTATTGTGAAAATGTAACAGTACAGTACATTGTTGTTCTCAAG
____________________________________________________________
consensus CAGATAGCTACACAAATTTATTGTGAAAATGTAACAGTACAGTACATTGTTGTTCTCAAG
. : . : . : . : . : . :
rJMFF024F01+ AGCTCATGAAGCCTGCAAATATGTACAGAAAGAGAAGAAATTAAAACATGTCGTCTGTAC
rJMFF015C13+ AGCTCATGAAGCCTGCAAATATGTACAGAAAGAGAAGAAATTAAAACATGTCGTCTGTAC
rJMFF043O04+ AGCTCATGAAGCCTGCAAATATGTACAGAAAGAGAAGAAATTAAAACATGTCGTCTGTAC
____________________________________________________________
consensus AGCTCATGAAGCCTGCAAATATGTACAGAAAGAGAAGAAATTAAAACATGTCGTCTGTAC
. : . : . : . : . : . :
rJMFF024F01+ ATATCTGTAATATTCATACATCAA
rJMFF015C13+ ATATCTGTAATATTCATACATCAATTTTGATTTTTAATACAAAAGGAAGG
rJMFF043O04+ ATATCTGTAATATTCATACATCAATTTTGATTTTTAATACAAAAGGAAGGGGAGTTCGGG
____________________________________________________________
consensus ATATCTGTAATATTCATACATCAATTTTGATTTTTAATACAAAAGGAAGGGGAGTTCGGG