| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004G23 | Sequence | 222 | 005892 (6) | 380 | 002671 (7) | emb|CAN77628.1| | 6e-75 | hypothetical protein VITISV_029424 [Vitis vinifera] | |||
| JMFF040N10 | Sequence | 566 | 005892 (6) | ref|XP_008348693.1| | 4e-45 | PREDICTED: dihydroorotase, mitochondrial-like isoform X1 [Malus domestica] | 786 | 002671 (7) | emb|CAN77628.1| | 2e-73 | hypothetical protein VITISV_029424 [Vitis vinifera] |
| JMFF043D19 | Sequence | 633 | 005892 (6) | ref|XP_008348693.1| | 1e-44 | PREDICTED: dihydroorotase, mitochondrial-like isoform X1 [Malus domestica] | 628 | 002671 (7) | emb|CAN77628.1| | 2e-70 | hypothetical protein VITISV_029424 [Vitis vinifera] |
| JMFN020H07 | Sequence | 578 | 002671 (7) | emb|CAN77628.1| | 1e-62 | hypothetical protein VITISV_029424 [Vitis vinifera] | |||||
| JMSF025L15 | Sequence | 682 | 005892 (6) | ref|XP_002274917.2| | 2e-90 | PREDICTED: dihydroorotase, mitochondrial isoform X2 [Vitis vinifera] | 758 | 002671 (7) | emb|CAN77628.1| | 7e-114 | hypothetical protein VITISV_029424 [Vitis vinifera] |
| JMSF026L15 | Sequence | 566 | 005892 (6) | ref|XP_010656978.1| | 7e-70 | PREDICTED: dihydroorotase, mitochondrial isoform X1 [Vitis vinifera] | 814 | 002671 (7) | ref|XP_010656979.1| | 4e-119 | PREDICTED: dihydroorotase, mitochondrial isoform X3 [Vitis vinifera] emb|CBI2186 |
| JMSF051F11 | Sequence | 137 | 005892 (6) | 792 | 002671 (7) | ref|XP_010656979.1| | 9e-131 | PREDICTED: dihydroorotase, mitochondrial isoform X3 [Vitis vinifera] emb|CBI2186 | |||
This contig is upended
. : . : . : . : . : . :
rJMSF051F11+ GAGAGGTNACTAGCCCAGAGGTTGATGTATTTGATCGAGAAAAGGTATT
rJMSF026L15+ CAGAGGTTGATGTATTTGATCGAG-AAAGGTATT
____________________________________________________________
consensus GAGAGGTNACTAGCCCAGAGGTTGATGTATTTGATCGAGAAAAGGTATT
. : . : . : . : . : . :
rJMSF051F11+ CATTGAGACAGTTTTAGGCCCTTTGGTTCAGAGACTTCCACAGTTGAAGATTGTGATGGA
rJMSF026L15+ CATTGAGACAGTTTTAGGCCCTTTGGTTCAGAGACTTCCACAGNTGAAGATTGTGATGGA
rJMSF025L15+ GAAGATTGTGATGGA
rJMFF040N10+ GAAGATTGTGATGGA
____________________________________________________________
consensus CATTGAGACAGTTTTAGGCCCTTTGGTTCAGAGACTTCCACAGTTGAAGATTGTGATGGA
. : . : . : . : . : . :
rJMSF051F11+ GCACGTCACCACC-TCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
rJMSF026L15+ GCACGTCACCACC-TCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
rJMFF004G23+ CGTGAAGGATCTGTTG
rJMSF025L15+ GCACGTCACCACC-TCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
rJMFF040N10+ GCACGTCACCACCTTCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
____________________________________________________________
consensus GCACGTCACCACC-TCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
. : . : . : . : . : . :
rJMSF051F11+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
rJMSF026L15+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTNCAAGGGGGAC
rJMFF004G23+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
rJMSF025L15+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
rJMFF040N10+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
____________________________________________________________
consensus CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
. : . : . : . : . : . :
rJMSF051F11+ TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMSF026L15+ TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMFF004G23+ TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMSF025L15+ TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMFF040N10+ TGCAGCCACACAATTATT-TCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMFF043D19+ AAAAGAGAGATCCATAGACAAGCTATTG
____________________________________________________________
consensus TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
. : . : . : . : . : . :
rJMSF051F11+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMSF026L15+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMFF004G23+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMSF025L15+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMFF040N10+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
JMFN020H07- GCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMFF043D19+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
____________________________________________________________
consensus TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
. : . : . : . : . : . :
rJMSF051F11+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMSF026L15+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMFF004G23+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMSF025L15+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMFF040N10+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
JMFN020H07- ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMFF043D19+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
____________________________________________________________
consensus ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
. : . : . : . : . : . :
rJMSF051F11+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMSF026L15+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMFF004G23+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMSF025L15+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMFF040N10+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
JMFN020H07- TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMFF043D19+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
____________________________________________________________
consensus TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
. : . : . : . : . : . :
rJMSF051F11+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
rJMSF026L15+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
rJMFF004G23+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAA
rJMSF025L15+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
rJMFF040N10+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
JMFN020H07- CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCTAGGAACACAACCAAAATTAAACTGA
rJMFF043D19+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
____________________________________________________________
consensus CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
. : . : . : . : . : . :
rJMSF051F11+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
rJMSF026L15+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
rJMSF025L15+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
rJMFF040N10+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
JMFN020H07- CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
rJMFF043D19+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
____________________________________________________________
consensus CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
. : . : . : . : . : . :
rJMSF051F11+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
rJMSF026L15+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
rJMSF025L15+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
rJMFF040N10+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
JMFN020H07- TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
rJMFF043D19+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
____________________________________________________________
consensus TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
. : . : . : . : . : . :
rJMSF051F11+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
rJMSF026L15+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
rJMSF025L15+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
rJMFF040N10+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
JMFN020H07- TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
rJMFF043D19+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
____________________________________________________________
consensus TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
. : . : . : . : . : . :
rJMSF051F11+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
rJMSF026L15+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
rJMSF025L15+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
rJMFF040N10+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
JMFN020H07- TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
rJMFF043D19+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
____________________________________________________________
consensus TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
. : . : . : . : . : . :
rJMSF051F11+ AACAGCTTTT
rJMSF026L15+ AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
rJMSF025L15+ AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
rJMFF040N10+ AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
JMFN020H07- AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
rJMFF043D19+ AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
____________________________________________________________
consensus AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
. : . : . : . : . : . :
rJMSF026L15+ TG
rJMSF025L15+ TGT
rJMFF040N10+ TGTTAAACCTCTTAATTAAGAAGAAA
JMFN020H07- TGTTAAACCTCTTAATTAAGAAGAAATATTAGTATTTTTGTTT
rJMFF043D19+ TGTTAAACCTCTTAATTAAGAAGAAATATTAGTATTTTTGTTTACAAAAAAAAAAAAAAA
____________________________________________________________
consensus TGTTAAACCTCTTAATTAAGAAGAAATATTAGTATTTTTGTTTACAAAAAAAAAAAAAAA