Contig 002670:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043C22Sequence644010694 (6)ref|XP_010262086.1|1e-07PREDICTED: zinc finger protein NUTCRACKER isoform X2 [Nelumbo nucifera]560002670 (5)ref|XP_009774627.1|2e-12PREDICTED: zinc finger protein NUTCRACKER-like [Nicotiana sylvestris] ref|XP_009
JMFF043E14Sequence557010694 (6)561002670 (5)ref|XP_009774627.1|2e-12PREDICTED: zinc finger protein NUTCRACKER-like [Nicotiana sylvestris] ref|XP_009
JMFF050B07Sequence555010694 (6)560002670 (5)ref|XP_006342974.1|4e-13PREDICTED: zinc finger protein MAGPIE-like isoform X1 [Solanum tuberosum] ref|X
JMFS143A05Sequence611002670 (5)ref|XP_009626387.1|1e-07PREDICTED: zinc finger protein NUTCRACKER-like [Nicotiana tomentosiformis] ref|X
JMSF025A14Sequence667010694 (6)ref|XP_010242235.1|4e-115PREDICTED: zinc finger protein NUTCRACKER-like isoform X2 [Nelumbo nucifera]758002670 (5)ref|XP_009626387.1|1e-21PREDICTED: zinc finger protein NUTCRACKER-like [Nicotiana tomentosiformis] ref|X

Alignment

This contig is upended


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JMFS143A05-                      TTTCCTTCAGTGAAAAAGGAGCAGCAACATTATAACGGCATGGGGATTA
                      ____________________________________________________________
consensus                        TTTCCTTCAGTGAAAAAGGAGCAGCAACATTATAACGGCATGGGGATTA
 
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JMFS143A05-           GCGGCGGCGGCGGTTTCAATCTGAGGCCGGAAATCCCGCCGTGGTTAATCACCTGTCAGC
rJMSF025A14+                  GGCGGTTTCAATNTGAGGCCGGAAATCCCGCCGTGGTTAATCACCTGTCAGC
                      ____________________________________________________________
consensus             GCGGCGGCGGCGGTTTCAATCTGAGGCCGGAAATCCCGCCGTGGTTAATCACCTGTCAGC
 
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JMFS143A05-           CGTTGGTCGGAGCCACCCACGGCCCTCCGCCGCCGCTGTTCCACCCCGGCGGGTTGGATT
rJMSF025A14+          CGTTGGTCGGAGCCACCCACGGCCNTCCGCCGCCGCTGTTCCACCCCGGCGGGTTGGATT
                      ____________________________________________________________
consensus             CGTTGGTCGGAGCCACCCACGGCCCTCCGCCGCCGCTGTTCCACCCCGGCGGGTTGGATT
 
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JMFS143A05-           TCCTCCACCACCATCATCAAGAATTCACGCAGGTGCAGAACCCAAACCCTAATAATAATC
rJMSF025A14+          TCCTCCACCACCATCATCAAGAATTCACGCAGGTGCAGAACCCAAACCCTAATAATAATC
                      ____________________________________________________________
consensus             TCCTCCACCACCATCATCAAGAATTCACGCAGGTGCAGAACCCAAACCCTAATAATAATC
 
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JMFS143A05-           TTGGAGGTGGGCCCACGCTACCACCTTTCCACCCAACGGCGTCGTCTCCGCAAATCTCTG
rJMSF025A14+          TTGGAGGTGGGCCCACGCTACCACCTTTCCACCCAACGGCGTCGTCTCCGCAAATCTCTG
                      ____________________________________________________________
consensus             TTGGAGGTGGGCCCACGCTACCACCTTTCCACCCAACGGCGTCGTCTCCGCAAATCTCTG
 
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JMFS143A05-           CCACTGCATTGCTGCAGAGAGCCGCTCAGATGGGCGCCACCGGCATTGGCAGCGGCACGG
rJMSF025A14+          CCACTGCATTGCTGCAGAGAGCCGCTCAGATGGGCGCCACCGGCATTGGCAGCGGCACGG
rJMFF043E14+                                                  CGGCATTGGCAGCGGCACGG
rJMFF050B07+                                                  CGGCATTGGCAGCGGCACGG
rJMFF043C22+                                                  CGGCATTGGCAGCGGCACGG
                      ____________________________________________________________
consensus             CCACTGCATTGCTGCAGAGAGCCGCTCAGATGGGCGCCACCGGCATTGGCAGCGGCACGG
 
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JMFS143A05-           CCAGTTCAGCGGCCCCAGCCATGCTGATGATCGGGCCCCACACCGATCACGTGTCTGCCG
rJMSF025A14+          CCAGTTCAGCGGCCCCAGCCATGCTGATGATCGGGCCCCACACCGATCACGTGTCTGCCG
rJMFF043E14+          CCAGTTCAGCGGCCCCAGCCATGNTGATGATCGGGCCCCACACCGATCACGTGTCTGCCG
rJMFF050B07+          CCAGTTCAGCGGCCCCAGCCATGCTGATGATCGGGCCCCACACCGATCACGTGTCTGCCG
rJMFF043C22+          CCAGTTCAGCGGCCCCAGCCATGCTGATGATCGGGCCCCACACCGATCACGTGTCTGCCG
                      ____________________________________________________________
consensus             CCAGTTCAGCGGCCCCAGCCATGCTGATGATCGGGCCCCACACCGATCACGTGTCTGCCG
 
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JMFS143A05-           ATCAAGCCAAGAATTTGTCGTCACGTGAGGCTGTAGCTGGGGACGACGTTATCAGTTCCT
rJMSF025A14+          ATCAAGCCAAGAATTTGTCGTCACGTGAGGCTGTAGCTGGGGACGACGTTATCAGTTCCT
rJMFF043E14+          ATCAAGCCAAGAATTTGTCGTCACGTGAGGCTGTAGCTGGGGACGACGTTATCAGTTCCT
rJMFF050B07+          ATCAAGCCAAGAATTTGTCGTCACGTGAGGCTGTAGCTGGGGACGACGTTATCAGTTCCT
rJMFF043C22+          ATCAAGCCAAGAATTNGTCGTCACGTGAGGCTGTAGCTGGGGACGACGTTATCAGTTCCT
                      ____________________________________________________________
consensus             ATCAAGCCAAGAATTTGTCGTCACGTGAGGCTGTAGCTGGGGACGACGTTATCAGTTCCT
 
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JMFS143A05-           CCGCCGCTGCAGCTCCGCCTCACGGCGGCTCTCTTCTTCACGACATCACCGCCGGCGCCA
rJMSF025A14+          CCGCCGCTGCAGCTCCGCCTCACGGCGGCTCTCTTCTTCACGACATCACCGCCGGCGCCA
rJMFF043E14+          CCGCCGCTGCAGCTCCGCCTCACGGCGGCTCTCTTTTTCACGACATCACCGCCGGCGCCA
rJMFF050B07+          CCGCCGCTGCAGCTCCGCCTCACGGCGGCTCTCTTCTTCACGACATCACCGCCGGCGCCA
rJMFF043C22+          CCGCCGCTGCAGCTCCGCCTCACGGCGGCTCTCTTCTTCACGACATCACCGCCGGCGCCA
                      ____________________________________________________________
consensus             CCGCCGCTGCAGCTCCGCCTCACGGCGGCTCTCTTCTTCACGACATCACCGCCGGCGCCA
 
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JMFS143A05-           CCTCGTTCTCATCCTCCACCACCGACCCTCACGGCTTTGACGCCTNCAGCTTCGAAGACC
rJMSF025A14+          CCTCGTTCTCATCCTCCACCACCGACCCTCACGGCTTTGACGCCTCCAGCTTCGAAGACC
rJMFF043E14+          CCTCGTTCTCATCCTCCACCACCGACCCTCACGGCTTTGACGCCTCCAGCTTCGAAGACC
rJMFF050B07+          CCTCGTTCTCATCCTCCACCACCGACCCTCACGGCTTTGACGCCTCCAGCTTCGAAGACC
rJMFF043C22+          CCTCGTTCTCATCCTCCACCACCGACCCTCACGGCTTTGACGCCTCCAGCTTCGAAGACC
                      ____________________________________________________________
consensus             CCTCGTTCTCATCCTCCACCACCGACCCTCACGGCTTTGACGCCTCCAGCTTCGAAGACC
 
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JMFS143A05-           CCTTCGGCGGCATTAATGGCGC                                      
rJMSF025A14+          CCTTCGGCGGCATTAATGGCGCAAACGACGATATGACGAAGGATTTCCTGGGTCTAAAGC
rJMFF043E14+          CCTTCGGCGGCATTAATGGCGCAAACGACGATATGACGAAGGATTTCCTGGGTCTAAGGC
rJMFF050B07+          CCTTCGGCGGCATTAATGGCGCAAACGACGATATGACGAAGGATTTCCTGGGTCTAAGGC
rJMFF043C22+          CCTTCGGCGGCATTAATGGCGCAAACGACGATATGACGAAGGATTTCCTGGGTCTAAGGC
                      ____________________________________________________________
consensus             CCTTCGGCGGCATTAATGGCGCAAACGACGATATGACGAAGGATTTCCTGGGTCTAAGGC
 
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rJMSF025A14+          CTCTCTCTCATTCCGACATTTTTAACATTACTTCACTCGTTGACAACCCTGCCAGTGATC
rJMFF043E14+          CTCTCTCTCATTCCGACATTTTTAACATTACTTCACTCGTTGACAACCCTGCCAGTGATC
rJMFF050B07+          CTCTCTCTCATTCCGACATTTTTAACATTACTTCACTCGTTGACAACCCTGCCAGTGATC
rJMFF043C22+          CTCTCTCTCATTCCGACATTTTTAACATTACTTCACTCGTTGACAACCCTGCCAGTGATC
                      ____________________________________________________________
consensus             CTCTCTCTCATTCCGACATTTTTAACATTACTTCACTCGTTGACAACCCTGCCAGTGATC
 
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rJMSF025A14+          ATCACCATCACCATCATCATCATCAACCTCAAGTTCAAAAGGCTTGGCCAAGCTAAACCC
rJMFF043E14+          ATCACCATCACCATCATCATCATCAACCTCAAGTTCAAAAGGCTTGGCCAAGCTAAACCC
rJMFF050B07+          ATCACCATCACCATCATCATCATCAACCTCAAGTTCAAAAGGCTTGGCCAAGCTAAACCC
rJMFF043C22+          ATCACCATCACCATCATCATCATCAACCTCAAGTTCAAAAGGCTTGGCCAAGCTAAACCC
                      ____________________________________________________________
consensus             ATCACCATCACCATCATCATCATCAACCTCAAGTTCAAAAGGCTTGGCCAAGCTAAACCC
 
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rJMSF025A14+          GAAACCCTAGCTAGTTTCATTTCAGTTACTCGTATGGTAGACGATA              
rJMFF043E14+          GAAACCCTAGCTAGTTTCATTTCAGTTACTCGTATGGTAGACGATAGGGCATTTCAAAGT
rJMFF050B07+          GAAACCCTAGCTAGTTTCATTTCAGTTACTCGTATGGTAGACGATAGGGCATTTCAAAGT
rJMFF043C22+          GAAACCCTAGCTAGTTTCATTTCAGTTACTCGTATGGTAGACGATAGGGCATTTCAAAGT
                      ____________________________________________________________
consensus             GAAACCCTAGCTAGTTTCATTTCAGTTACTCGTATGGTAGACGATAGGGCATTTCAAAGT
 
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rJMFF043E14+          TAATGACCTATCTATTCTTATATGTCTAATCTTTGCATAAGAAATAATTCAATTGTGATG
rJMFF050B07+          TAATGACCTATCTATTCTTATATGTCTAATCTTTGCATAAGAAATAATTCAATTGTGATG
rJMFF043C22+          TAATGACCTATCTATTCTTATATGTCTAATCTTTGCATAAGAAATAATTCAATTGTGATG
                      ____________________________________________________________
consensus             TAATGACCTATCTATTCTTATATGTCTAATCTTTGCATAAGAAATAATTCAATTGTGATG