Contig 002666:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042F13Sequence643002140 (3)gb|EPS73968.1|4e-52hypothetical protein M569_00787, partial [Genlisea aurea]622002666 (4)emb|CDP17753.1|1e-21unnamed protein product [Coffea canephora]
JMSF012F07Sequence303002140 (3)779002666 (4)emb|CDP17753.1|3e-63unnamed protein product [Coffea canephora]
JMSF027N01Sequence671018936601002666 (4)ref|XP_010680185.1|5e-55PREDICTED: transmembrane protein 184B [Beta vulgaris subsp. vulgaris] ref|XP_010
JMSF052B14Sequence690002140 (3)ref|XP_009603516.1|3e-31PREDICTED: transmembrane protein 184A [Nicotiana tomentosiformis] ref|XP_0096035773002666 (4)emb|CDP17753.1|2e-50unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF027N01-                                    ATTGTGATAAAGGTCGAGTAATCCATTCCCACTG
                      ____________________________________________________________
consensus                                       ATTGTGATAAAGGTCGAGTAATCCATTCCCACTG
 
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rJMSF027N01-          ACTGCCTCTTTAACTTTTGACAGGGCTGTTCTGGTTTTTCTTGCTGCAGAGTCCAGACTT
                      ____________________________________________________________
consensus             ACTGCCTCTTTAACTTTTGACAGGGCTGTTCTGGTTTTTCTTGCTGCAGAGTCCAGACTT
 
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rJMSF027N01-          ATAAAGGACACAGCGAGAAGCTGCAGACTTTCACAATTTTTTAATTTGCGTTGAGATGCT
rJMSF012F07+                                               TTTTTAATTTGCGNTGAGATGCT
rJMSF052B14+                                                             TGAGATGCT
                      ____________________________________________________________
consensus             ATAAAGGACACAGCGAGAAGCTGCAGACTTTCACAATTTTTTAATTTGCGTTGAGATGCT
 
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rJMSF027N01-          AATCGCAGCTATTGGACATTTTTATGCCTTT-CCATACAAGGAGTATGCTGGTGCNAATA
rJMSF012F07+          AATCGCAGCTATTGGACATTTTTATGCCTTT-CCATACAAGGAGTATGCTGGTGCAAATA
rJMSF052B14+          AATCGCAGCTATTGGACATTTTTATGCCTTTNCCATACAAGGAGTATGCTGGTGCAAATA
                      ____________________________________________________________
consensus             AATCGCAGCTATTGGACATTTTTATGCCTTT-CCATACAAGGAGTATGCTGGTGCAAATA
 
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rJMSF027N01-          TTGGNTCTTCTCGTGGCTTTACTGCANGCCTTGCNCATGCTCTGGNGTTGAACGACTTTT
rJMSF012F07+          TTGGTTCTTCTCGTGGCTTTACTGCAAGCCTTGCGCATGCTCTGATGTTGAACGACTTTT
rJMSF052B14+          TTGGTTCTTCTCGTGGCTTTACTGCAAGCCTTGCGCATGCTCTGATGTTGAACGACTTTT
                      ____________________________________________________________
consensus             TTGGTTCTTCTCGTGGCTTTACTGCAAGCCTTGCGCATGCTCTGATGTTGAACGACTTTT
 
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rJMSF027N01-          ACCATGATACAGTGCACCAGTTTGCACCTACTTACCACGATTATGTACTCTACAACCACG
rJMSF012F07+          ACCATGATACAGTGCACCAGTTTGCACCTACTTACCACGATTATGTACTCTACAACCACG
rJMSF052B14+          ACCATGATACAGTGCACCAGTTTGCACCTACTTACCACGATTATGTACTCTACAACCACG
rJMFF042F13+                                               CGATTATGTACTCTACAACCACG
                      ____________________________________________________________
consensus             ACCATGATACAGTGCACCAGTTTGCACCTACTTACCACGATTATGTACTCTACAACCACG
 
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rJMSF027N01-          GTGATGGTGAAGGAGCGAAGAAGTATAAGGCCCGGACCTTTGTTCCGACTGGCCAAGAGA
rJMSF012F07+          GTGATGGTGAAGGAGCGAAGAAGTATAGGGCCCGGACCTTTGTTCCGACTGGCCAAGAGA
rJMSF052B14+          GTGATGGTGAAGGAGCGAAGAAGTATAGGGCCCGGACCTTTGTTCCGACTGGCCAAGAGA
rJMFF042F13+          GTGATGGTGAAGGAGCGAAGAAGTATAGGGCCCGGACCTTTGTTCCGACTGGCCAAGAGA
                      ____________________________________________________________
consensus             GTGATGGTGAAGGAGCGAAGAAGTATAGGGCCCGGACCTTTGTTCCGACTGGCCAAGAGA
 
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rJMSF027N01-          TGGATGCTGTTANAAGAAATAAACATGGCTTTGAGAAACAGGTTGGAAGACGTACNGATG
rJMSF012F07+          TGGATGCTGTTAGAAGAAATAAACATGGCTTTG-GAAACAGGTTGGAAGACGTACAGATG
rJMSF052B14+          TGGATGCTGTTAGAAGAAATAAACATGGCTTTG-GAAACAGGTTGGAAGACGTACAGATG
rJMFF042F13+          TGGATGCTGTTAGAAGAAATAAACATGGCTTTG-GAAACAGGTTGGAAGACGTACAGATG
                      ____________________________________________________________
consensus             TGGATGCTGTTAGAAGAAATAAACATGGCTTTG-GAAACAGGTTGGAAGACGTACAGATG
 
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rJMSF027N01-          TCATGTCGCTCNTCATCTGCTANCAGGACTTCNCAANATCCCGATAACACTCAAGATTCA
rJMSF012F07+          TCATGTCGCTCATCATCTGCTAGCAGGACTTCACAAAATCCCGATAACACTCAAGATTCA
rJMSF052B14+          TCATGTCGCTCATCATCTGCTAGCAGGACTTCACAAAATCCCGATAACACTCAAGATTCA
rJMFF042F13+          TCATGTCGCTCATCATCTGCTAGCAGGACTTCACAAAATCCCGATAACACTCAAGATTCA
                      ____________________________________________________________
consensus             TCATGTCGCTCATCATCTGCTAGCAGGACTTCACAAAATCCCGATAACACTCAAGATTCA
 
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rJMSF027N01-          ACNAAAACTGAGGCAATGAACTCTTCACTACTCATGGAGTCATCAAGTTCACAGTCTTTG
rJMSF012F07+          ACAAAAACTGAGGCAATGAACTCTTCACTACTCATGGAGTCATCAAGTTCACAGTCTTTG
rJMSF052B14+          ACAAAAACTGAGGCAATGAACTCTTCACTACTCATGGAGTCATCAAGTTCACAGTCTTTG
rJMFF042F13+          ACAAAAACTGAGGCAATGAACTCTTCACTACTCATGGAGTCATCAAGTTCACAGTCTTTG
                      ____________________________________________________________
consensus             ACAAAAACTGAGGCAATGAACTCTTCACTACTCATGGAGTCATCAAGTTCACAGTCTTTG
 
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rJMSF027N01-          CCTTACGATCTGTCNCTCANTGATATAG                                
rJMSF012F07+          CCTTACGATCTGTCACTCATTGATATAGACATATCCGATTATCCCACAAAGGTACCTTCA
rJMSF052B14+          CCTTACGATCTGTCACTCATTGATATAGACATATCCGATTATCCCACAAAGGTACCTTCA
rJMFF042F13+          CCTTACGATCTGTCACTCATTGATATAGACATATCCGATTATCCCACAAAGGTACCTTCA
                      ____________________________________________________________
consensus             CCTTACGATCTGTCACTCATTGATATAGACATATCCGATTATCCCACAAAGGTACCTTCA
 
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rJMSF012F07+          GCTAATGAAACTGTGAAGAGGTGACTATGGACTGTAAGTTTACCTCTTTTGTACCTATAT
rJMSF052B14+          GCTAATGAAACTGTGAAGAGGTGACTATGGACTGTAAGTTTACCTCTTTTGTACCTATGT
rJMFF042F13+          GCTAATGAAACTGTGAAGAGGTGACTATGGACTGTAAGTTTACCTCTTTTGTACCTATAT
                      ____________________________________________________________
consensus             GCTAATGAAACTGTGAAGAGGTGACTATGGACTGTAAGTTTACCTCTTTTGTACCTATAT
 
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rJMSF012F07+          CCTAAACCGTGTATTAGGGTTGTGTCATTTGTACGTGCCTGTTCATCTTCCCATTGTTTA
rJMSF052B14+          CCTAAACCGTGTATTAGGGTTGTGTCATTTGTACGTGCCTGTTCATCTTCCCATTGTTTA
rJMFF042F13+          CCTAAACCGTGTATTAGGGTTGTGTCATTTGTACGTGCCTGTTCATCTTCCCATTGTTTA
                      ____________________________________________________________
consensus             CCTAAACCGTGTATTAGGGTTGTGTCATTTGTACGTGCCTGTTCATCTTCCCATTGTTTA
 
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rJMSF012F07+          CGTTTAATCACTTAGTATGTACATGTAGTCAAACATGCTCTCTCATTTTTCCTTAAAACT
rJMSF052B14+          CGTTTAATCACTTAGTATGTACATGTAGTCAAACATGCTCTCTCATTTTTCCTTAAAACT
rJMFF042F13+          CGTTTAATCACTTAGTATGTACATGTAGTCAAACATGCTCTCTCATTTTTCCTTAAAACT
                      ____________________________________________________________
consensus             CGTTTAATCACTTAGTATGTACATGTAGTCAAACATGCTCTCTCATTTTTCCTTAAAACT
 
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rJMSF012F07+          GTCCATAGTGTTGTTCTATTTGTACCATAGGGTTGAGGAAACCACAAT            
rJMSF052B14+          GTCCATAGTGTTGTTCTATTTGTACCATAGGGTTGAGGAAACCACAATTGACTAGAACGC
rJMFF042F13+          GTCCATAGTGTTGTTCTATTTGTACCATAGGGTTGAGGAAACCACAATTGACTAGAACGC
                      ____________________________________________________________
consensus             GTCCATAGTGTTGTTCTATTTGTACCATAGGGTTGAGGAAACCACAATTGACTAGAACGC
 
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rJMSF052B14+          TTTACAGTACTGAAACTTTTTACATTTCAGTGGAA                         
rJMFF042F13+          TTTACAGTACTGAAACTTTTTACATTTCAGTGGAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TTTACAGTACTGAAACTTTTTACATTTCAGTGGAAAAAAAAAAAAAAAACTCTCCAGGGT